Wall clock time and date at job start Tue Mar 31 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00057 * 2 1 4 4 C 1.39674 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.38919 * 120.07251 * 354.29842 * 4 2 1 6 6 C 1.38104 * 119.92476 * 180.02562 * 5 4 2 7 7 C 1.38283 * 120.07275 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.92322 * 179.72277 * 7 6 5 9 9 N 1.46899 * 109.46853 * 90.00281 * 8 7 6 10 10 C 1.46905 * 110.99488 * 180.02562 * 9 8 7 11 11 C 1.50708 * 109.46742 * 179.97438 * 10 9 8 12 12 C 1.38327 * 119.96221 * 269.72299 * 11 10 9 13 13 C 1.38277 * 120.13334 * 179.76696 * 12 11 10 14 14 C 1.38119 * 120.07370 * 0.51179 * 13 12 11 15 15 C 1.38859 * 119.92569 * 359.74359 * 14 13 12 16 16 O 1.35758 * 120.06883 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99624 * 5.57665 * 16 15 14 18 18 H 1.07996 * 120.00332 * 354.93663 * 17 16 15 19 19 C 1.38653 * 119.99789 * 174.94357 * 17 16 15 20 20 N 1.31561 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00251 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46979 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47295 * 119.99444 * 21 19 17 24 24 H 1.48498 * 109.47543 * 240.00044 * 21 19 17 25 25 C 1.38079 * 119.96493 * 89.99955 * 11 10 9 26 26 C 1.38289 * 120.15099 * 359.97438 * 7 6 5 27 27 C 1.38102 * 120.07579 * 0.02562 * 26 7 6 28 28 H 1.08998 * 109.47013 * 269.99699 * 1 2 3 29 29 H 1.09005 * 109.47210 * 29.99628 * 1 2 3 30 30 H 1.09000 * 109.47523 * 149.99729 * 1 2 3 31 31 H 1.08996 * 109.46721 * 185.05299 * 3 2 1 32 32 H 1.08995 * 109.47264 * 305.05836 * 3 2 1 33 33 H 1.09004 * 109.46568 * 65.06099 * 3 2 1 34 34 H 1.08004 * 120.03942 * 0.04581 * 5 4 2 35 35 H 1.08001 * 119.96459 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.46970 * 209.99677 * 8 7 6 37 37 H 1.09000 * 109.46984 * 329.99978 * 8 7 6 38 38 H 1.00898 * 111.00086 * 303.94708 * 9 8 7 39 39 H 1.08996 * 109.47333 * 299.99752 * 10 9 8 40 40 H 1.08994 * 109.47251 * 60.00009 * 10 9 8 41 41 H 1.07995 * 119.92933 * 359.97438 * 12 11 10 42 42 H 1.08001 * 119.96364 * 180.25571 * 13 12 11 43 43 H 1.07995 * 120.04020 * 179.76472 * 14 13 12 44 44 H 0.97005 * 119.99515 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03479 * 359.95845 * 25 11 10 46 46 H 1.08004 * 119.95804 * 179.97438 * 26 7 6 47 47 H 1.07999 * 120.03841 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4755 -2.4106 0.1184 6 6 2.1691 -3.6049 0.1180 7 6 3.5468 -3.6060 -0.0011 8 6 4.3009 -4.9108 0.0052 9 7 4.4268 -5.4101 -1.3705 10 6 5.1577 -6.6840 -1.4033 11 6 5.2662 -7.1644 -2.8276 12 6 4.2861 -7.9849 -3.3565 13 6 4.3797 -8.4238 -4.6644 14 6 5.4579 -8.0525 -5.4437 15 6 6.4460 -7.2332 -4.9139 16 8 7.5074 -6.8670 -5.6771 17 6 7.4853 -7.2360 -6.9737 18 1 6.6896 -7.8664 -7.3423 19 6 8.4843 -6.8064 -7.8338 20 7 9.4534 -6.0382 -7.3849 21 14 8.4543 -7.3183 -9.6301 22 1 7.2680 -8.1759 -9.8806 23 1 8.3799 -6.1087 -10.4883 24 1 9.6903 -8.0767 -9.9495 25 6 6.3466 -6.7896 -3.6014 26 6 4.2346 -2.4122 -0.1207 27 6 3.5472 -1.2144 -0.1210 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 3.2657 1.0715 -0.0905 32 1 1.8680 1.8785 -0.8412 33 1 2.0039 1.8000 0.9319 34 1 0.3994 -2.4105 0.2106 35 1 1.6350 -4.5389 0.2108 36 1 5.2936 -4.7546 0.4273 37 1 3.7601 -5.6400 0.6085 38 1 3.5213 -5.5019 -1.8062 39 1 6.1563 -6.5406 -0.9908 40 1 4.6225 -7.4253 -0.8100 41 1 3.4446 -8.2805 -2.7477 42 1 3.6108 -9.0610 -5.0759 43 1 5.5324 -8.3987 -6.4639 44 1 10.1526 -5.7380 -7.9866 45 1 7.1133 -6.1521 -3.1867 46 1 5.3107 -2.4167 -0.2131 47 1 4.0849 -0.2825 -0.2149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079076910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:42 Heat of formation + Delta-G solvation = 39.344006 kcal Electronic energy + Delta-G solvation = -25668.829790 eV Core-core repulsion = 22010.420154 eV Total energy + Delta-G solvation = -3658.409636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.82532 -39.01447 -37.30141 -36.54649 -34.98559 -32.24769 -31.49412 -31.27274 -29.75267 -28.84114 -28.42434 -26.41850 -25.32354 -24.27917 -22.89779 -22.43582 -21.57141 -20.61685 -20.36405 -17.76996 -17.50514 -16.90102 -16.18030 -15.63962 -15.37106 -15.15487 -14.91662 -14.68530 -14.60467 -14.30699 -14.20276 -13.80426 -13.72039 -13.48400 -13.19408 -12.91288 -12.88442 -12.58457 -12.38952 -12.28899 -12.21056 -11.94412 -11.79601 -11.47145 -11.35744 -11.15794 -10.81617 -10.76877 -10.65632 -10.50736 -10.37470 -9.90093 -9.27332 -8.95245 -8.80004 -8.29863 -7.99542 -7.38907 -7.17311 -6.39544 -3.98367 1.41166 1.49349 2.19472 2.42990 2.89497 3.15415 3.16987 3.22419 3.76593 4.00746 4.45455 4.60306 4.68594 4.80531 4.90517 4.95171 5.00645 5.02260 5.12239 5.21441 5.24855 5.26753 5.32340 5.36000 5.43293 5.46012 5.55925 5.64251 5.67932 5.75847 5.79110 5.93518 5.98586 5.99965 6.18821 6.24014 6.34774 6.43006 6.71395 6.73003 6.77601 6.98569 7.02932 7.12320 7.15540 7.32812 7.36160 7.40750 7.49925 7.57473 7.88525 8.05762 9.06298 9.77764 10.78760 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002144 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.171290 B =13059.597834 C =14095.287943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.642 5.642 3 C 0.090 3.910 4 C 0.211 3.789 5 C -0.198 4.198 6 C -0.066 4.066 7 C -0.136 4.136 8 C 0.105 3.895 9 N -0.677 5.677 10 C 0.106 3.894 11 C -0.047 4.047 12 C -0.207 4.207 13 C -0.076 4.076 14 C -0.233 4.233 15 C 0.151 3.849 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.165 4.165 26 C -0.047 4.047 27 C -0.200 4.200 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.343 0.657 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.269 0.731 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.223 8.984 16.438 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.354 5.354 3 C -0.053 4.053 4 C 0.110 3.890 5 C -0.221 4.221 6 C -0.085 4.085 7 C -0.138 4.138 8 C -0.024 4.024 9 N -0.308 5.308 10 C -0.022 4.022 11 C -0.048 4.048 12 C -0.227 4.227 13 C -0.095 4.095 14 C -0.252 4.252 15 C 0.098 3.902 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.185 4.185 26 C -0.066 4.066 27 C -0.222 4.222 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.161 0.839 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.135 0.865 46 H 0.141 0.859 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.334 9.769 16.267 24.397 hybrid contribution -0.830 -0.804 -0.718 1.360 sum -16.163 8.965 15.549 24.154 Atomic orbital electron populations 1.21570 0.79710 1.02560 1.00905 1.46268 1.04870 1.03206 1.81095 1.21682 0.97921 0.84961 1.00759 1.17839 0.91301 0.85588 0.94267 1.20578 0.99393 0.91171 1.10926 1.20765 0.93534 0.97106 0.97102 1.19544 0.93385 0.94793 1.06081 1.20784 0.99313 0.92370 0.89901 1.60544 1.24487 1.28970 1.16811 1.20816 0.98942 0.89041 0.93451 1.19159 0.94482 0.96846 0.94282 1.20421 1.00457 1.05508 0.96281 1.20682 0.96769 0.98266 0.93757 1.21174 0.97189 1.05320 1.01537 1.19368 0.87331 0.92129 0.91361 1.83986 1.34985 1.67856 1.21452 1.21359 1.11766 1.31570 0.81945 0.89105 1.25279 0.95129 0.96222 0.99972 1.70058 1.11642 1.32267 1.35886 0.85659 0.78579 0.78489 0.80749 1.19154 1.20181 1.20202 1.20026 1.00430 1.05399 0.92659 1.20805 0.99759 0.91096 0.94925 1.20717 0.92237 0.98690 1.10532 0.93653 0.91727 0.91365 0.90258 0.92740 0.93213 0.86353 0.86523 0.90497 0.95027 0.83907 0.90481 0.94935 0.88097 0.87629 0.85701 0.92154 0.86493 0.85852 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 10.10 59.85 0.60 1.24 16 2 N -0.64 -5.74 3.41 -187.55 -0.64 -6.38 16 3 C 0.09 0.62 10.63 59.85 0.64 1.25 16 4 C 0.21 2.29 6.54 -83.79 -0.55 1.74 16 5 C -0.20 -2.09 9.16 -39.38 -0.36 -2.45 16 6 C -0.07 -0.71 9.69 -39.61 -0.38 -1.09 16 7 C -0.14 -1.59 5.39 -104.58 -0.56 -2.15 16 8 C 0.10 1.21 5.81 -4.97 -0.03 1.18 16 9 N -0.68 -9.42 6.48 -116.33 -0.75 -10.18 16 10 C 0.11 1.54 5.81 -4.97 -0.03 1.51 16 11 C -0.05 -0.86 5.39 -104.64 -0.56 -1.42 16 12 C -0.21 -3.65 9.70 -39.53 -0.38 -4.03 16 13 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 14 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 15 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 16 O -0.18 -5.23 9.76 0.02 0.00 -5.23 16 17 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 18 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 21 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.17 -3.62 9.65 -39.40 -0.38 -4.00 16 26 C -0.05 -0.55 9.69 -39.61 -0.38 -0.93 16 27 C -0.20 -2.22 9.31 -39.38 -0.37 -2.59 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 30 H 0.07 0.45 6.45 -51.93 -0.34 0.11 16 31 H 0.08 0.53 5.31 -51.93 -0.28 0.26 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.12 1.03 6.31 -52.48 -0.33 0.70 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.34 4.74 8.71 -39.29 -0.34 4.40 16 39 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 45 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 46 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 47 H 0.12 1.15 5.74 -52.49 -0.30 0.85 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -32.38 388.69 -10.14 -42.53 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.77 Total: 8.05 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -3.57 Total: -25.52 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.63 Total: -41.56 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.38 -10.14 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079076910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.871 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds