Wall clock time and date at job start Tue Mar 31 2020 14:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00057 * 2 1 4 4 C 1.39674 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.38919 * 120.07251 * 354.29842 * 4 2 1 6 6 C 1.38104 * 119.92476 * 180.02562 * 5 4 2 7 7 C 1.38283 * 120.07275 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.92322 * 179.72277 * 7 6 5 9 9 N 1.46899 * 109.46853 * 90.00281 * 8 7 6 10 10 C 1.46905 * 110.99488 * 180.02562 * 9 8 7 11 11 C 1.50708 * 109.46742 * 179.97438 * 10 9 8 12 12 C 1.38327 * 119.96221 * 269.72299 * 11 10 9 13 13 C 1.38277 * 120.13334 * 179.76696 * 12 11 10 14 14 C 1.38119 * 120.07370 * 0.51179 * 13 12 11 15 15 C 1.38859 * 119.92569 * 359.74359 * 14 13 12 16 16 O 1.35758 * 120.06883 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99624 * 5.57665 * 16 15 14 18 18 H 1.07996 * 120.00332 * 354.93663 * 17 16 15 19 19 C 1.38653 * 119.99789 * 174.94357 * 17 16 15 20 20 N 1.31561 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00251 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46979 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47295 * 119.99444 * 21 19 17 24 24 H 1.48498 * 109.47543 * 240.00044 * 21 19 17 25 25 C 1.38079 * 119.96493 * 89.99955 * 11 10 9 26 26 C 1.38289 * 120.15099 * 359.97438 * 7 6 5 27 27 C 1.38102 * 120.07579 * 0.02562 * 26 7 6 28 28 H 1.08998 * 109.47013 * 269.99699 * 1 2 3 29 29 H 1.09005 * 109.47210 * 29.99628 * 1 2 3 30 30 H 1.09000 * 109.47523 * 149.99729 * 1 2 3 31 31 H 1.08996 * 109.46721 * 185.05299 * 3 2 1 32 32 H 1.08995 * 109.47264 * 305.05836 * 3 2 1 33 33 H 1.09004 * 109.46568 * 65.06099 * 3 2 1 34 34 H 1.08004 * 120.03942 * 0.04581 * 5 4 2 35 35 H 1.08001 * 119.96459 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.46970 * 209.99677 * 8 7 6 37 37 H 1.09000 * 109.46984 * 329.99978 * 8 7 6 38 38 H 1.00898 * 111.00086 * 303.94708 * 9 8 7 39 39 H 1.08996 * 109.47333 * 299.99752 * 10 9 8 40 40 H 1.08994 * 109.47251 * 60.00009 * 10 9 8 41 41 H 1.07995 * 119.92933 * 359.97438 * 12 11 10 42 42 H 1.08001 * 119.96364 * 180.25571 * 13 12 11 43 43 H 1.07995 * 120.04020 * 179.76472 * 14 13 12 44 44 H 0.97005 * 119.99515 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03479 * 359.95845 * 25 11 10 46 46 H 1.08004 * 119.95804 * 179.97438 * 26 7 6 47 47 H 1.07999 * 120.03841 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4755 -2.4106 0.1184 6 6 2.1691 -3.6049 0.1180 7 6 3.5468 -3.6060 -0.0011 8 6 4.3009 -4.9108 0.0052 9 7 4.4268 -5.4101 -1.3705 10 6 5.1577 -6.6840 -1.4033 11 6 5.2662 -7.1644 -2.8276 12 6 4.2861 -7.9849 -3.3565 13 6 4.3797 -8.4238 -4.6644 14 6 5.4579 -8.0525 -5.4437 15 6 6.4460 -7.2332 -4.9139 16 8 7.5074 -6.8670 -5.6771 17 6 7.4853 -7.2360 -6.9737 18 1 6.6896 -7.8664 -7.3423 19 6 8.4843 -6.8064 -7.8338 20 7 9.4534 -6.0382 -7.3849 21 14 8.4543 -7.3183 -9.6301 22 1 7.2680 -8.1759 -9.8806 23 1 8.3799 -6.1087 -10.4883 24 1 9.6903 -8.0767 -9.9495 25 6 6.3466 -6.7896 -3.6014 26 6 4.2346 -2.4122 -0.1207 27 6 3.5472 -1.2144 -0.1210 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 3.2657 1.0715 -0.0905 32 1 1.8680 1.8785 -0.8412 33 1 2.0039 1.8000 0.9319 34 1 0.3994 -2.4105 0.2106 35 1 1.6350 -4.5389 0.2108 36 1 5.2936 -4.7546 0.4273 37 1 3.7601 -5.6400 0.6085 38 1 3.5213 -5.5019 -1.8062 39 1 6.1563 -6.5406 -0.9908 40 1 4.6225 -7.4253 -0.8100 41 1 3.4446 -8.2805 -2.7477 42 1 3.6108 -9.0610 -5.0759 43 1 5.5324 -8.3987 -6.4639 44 1 10.1526 -5.7380 -7.9866 45 1 7.1133 -6.1521 -3.1867 46 1 5.3107 -2.4167 -0.2131 47 1 4.0849 -0.2825 -0.2149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079076910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:41 Heat of formation + Delta-G solvation = 20.018324 kcal Electronic energy + Delta-G solvation = -25669.667814 eV Core-core repulsion = 22010.420154 eV Total energy + Delta-G solvation = -3659.247660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79652 -40.56131 -38.68254 -37.66509 -36.09089 -34.27619 -32.70523 -32.04432 -31.08082 -30.34615 -28.99248 -27.61130 -27.10057 -25.39567 -23.79889 -23.25808 -23.17885 -22.22120 -21.21443 -19.51396 -18.77730 -18.30113 -17.10232 -16.71959 -16.49356 -16.41804 -16.06738 -15.97564 -15.78886 -15.72986 -15.34770 -15.13200 -14.85843 -14.50061 -14.43648 -14.35829 -13.95870 -13.62335 -13.43115 -13.35932 -13.16731 -12.96784 -12.85263 -12.81749 -12.71819 -12.51123 -12.28171 -12.16284 -12.08276 -11.94030 -11.56762 -11.15173 -10.80733 -10.64204 -9.77852 -9.66272 -9.26833 -8.94948 -8.45644 -8.11728 -6.13997 0.51677 0.59464 0.70830 0.77831 1.34889 1.43847 1.53640 2.18462 2.28213 2.79352 2.94467 3.16940 3.49102 3.68345 3.89653 4.03451 4.05879 4.06958 4.16200 4.28147 4.34605 4.38140 4.47118 4.52020 4.56092 4.58420 4.62697 4.71208 4.73664 4.75511 4.77917 4.79578 4.89568 4.95664 4.98989 5.12764 5.15106 5.21998 5.33765 5.40973 5.53347 5.69386 5.76051 5.80520 5.87692 5.98603 6.04827 6.12125 6.28479 6.38259 6.52092 6.58994 6.99083 7.81649 8.78198 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002144 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.171290 B =13059.597834 C =14095.287943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.648 5.648 3 C 0.084 3.916 4 C 0.202 3.798 5 C -0.207 4.207 6 C -0.067 4.067 7 C -0.151 4.151 8 C 0.111 3.889 9 N -0.692 5.692 10 C 0.111 3.889 11 C -0.037 4.037 12 C -0.183 4.183 13 C -0.072 4.072 14 C -0.245 4.245 15 C 0.110 3.890 16 O -0.235 6.235 17 C -0.412 4.412 18 H 0.101 0.899 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.251 1.251 23 H -0.269 1.269 24 H -0.268 1.268 25 C -0.184 4.184 26 C -0.063 4.063 27 C -0.215 4.215 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.344 0.656 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.103 0.897 46 H 0.119 0.881 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.790 8.026 17.417 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.360 5.360 3 C -0.058 4.058 4 C 0.100 3.900 5 C -0.229 4.229 6 C -0.086 4.086 7 C -0.154 4.154 8 C -0.017 4.017 9 N -0.324 5.324 10 C -0.017 4.017 11 C -0.038 4.038 12 C -0.202 4.202 13 C -0.090 4.090 14 C -0.265 4.265 15 C 0.060 3.940 16 O -0.142 6.142 17 C -0.488 4.488 18 H 0.119 0.881 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.174 1.174 23 H -0.194 1.194 24 H -0.193 1.193 25 C -0.204 4.204 26 C -0.083 4.083 27 C -0.237 4.237 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.137 0.863 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.960 8.815 17.295 27.135 hybrid contribution 0.020 -0.473 -0.729 0.870 sum -18.940 8.341 16.566 26.509 Atomic orbital electron populations 1.21723 0.78409 1.03354 1.01687 1.46545 1.05899 1.03129 1.80412 1.21811 0.97705 0.84458 1.01836 1.18049 0.91398 0.86662 0.93869 1.20840 1.00348 0.91022 1.10691 1.20991 0.93207 0.98037 0.96368 1.19624 0.93996 0.94633 1.07120 1.20752 0.99559 0.92667 0.88677 1.60467 1.24682 1.28601 1.18673 1.20779 0.99692 0.90218 0.91002 1.19601 0.92803 0.95645 0.95712 1.21000 1.00583 1.02640 0.95950 1.21134 0.96070 0.97827 0.93981 1.21294 0.97986 1.05386 1.01821 1.19934 0.87868 0.93902 0.92297 1.83948 1.37679 1.70394 1.22172 1.21861 1.12457 1.32054 0.82423 0.88148 1.26620 0.94371 0.96062 1.05248 1.70208 1.13086 1.34797 1.38009 0.84512 0.79318 0.78481 0.73761 1.17426 1.19390 1.19258 1.20221 1.01831 1.06008 0.92297 1.20932 0.99818 0.91837 0.95665 1.20885 0.92836 0.98918 1.11038 0.92806 0.90237 0.91321 0.90597 0.91730 0.91987 0.84670 0.84674 0.90756 0.93056 0.83705 0.90728 0.91813 0.83410 0.83661 0.86546 0.91906 0.87923 0.86303 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.10 127.77 1.29 2.30 16 2 N -0.65 -10.60 3.41 -747.28 -2.55 -13.14 16 3 C 0.08 1.05 10.63 127.77 1.36 2.40 16 4 C 0.20 4.18 6.54 38.21 0.25 4.42 16 5 C -0.21 -3.97 9.16 22.40 0.21 -3.77 16 6 C -0.07 -1.30 9.69 22.25 0.22 -1.09 16 7 C -0.15 -3.35 5.39 -19.84 -0.11 -3.46 16 8 C 0.11 2.34 5.81 85.56 0.50 2.84 16 9 N -0.69 -17.79 6.48 -521.96 -3.38 -21.17 16 10 C 0.11 2.93 5.81 85.56 0.50 3.43 16 11 C -0.04 -1.28 5.39 -19.88 -0.11 -1.38 16 12 C -0.18 -5.66 9.70 22.30 0.22 -5.44 16 13 C -0.07 -2.50 10.04 22.25 0.22 -2.28 16 14 C -0.25 -11.02 9.17 22.39 0.21 -10.82 16 15 C 0.11 5.72 6.65 22.58 0.15 5.87 16 16 O -0.23 -14.70 9.76 -22.85 -0.22 -14.93 16 17 C -0.41 -24.74 9.49 67.92 0.64 -24.09 16 18 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 19 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 20 N -0.92 -58.20 13.67 21.61 0.30 -57.90 16 21 Si 1.02 43.99 29.55 68.60 2.03 46.02 16 22 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 C -0.18 -8.28 9.65 22.39 0.22 -8.07 16 26 C -0.06 -1.49 9.69 22.25 0.22 -1.28 16 27 C -0.21 -4.73 9.31 22.40 0.21 -4.52 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.64 8.07 -2.38 -0.02 0.62 16 30 H 0.07 0.75 6.45 -2.39 -0.02 0.74 16 31 H 0.08 0.98 5.31 -2.39 -0.01 0.96 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.14 2.04 6.31 -2.91 -0.02 2.02 16 35 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 37 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 38 H 0.34 8.52 8.71 -89.70 -0.78 7.74 16 39 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 40 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 41 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 42 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 43 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 44 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 45 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 46 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.13 2.49 5.74 -2.91 -0.02 2.47 16 Total: -1.00 -75.69 388.69 3.02 -72.67 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.20 Total: 34.45 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 6.64 Total: -45.99 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -5.63 Total: -92.22 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.93 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.69 3.02 -72.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079076910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.691 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds