Wall clock time and date at job start Tue Mar 31 2020 14:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00244 * 2 1 4 4 C 1.50708 * 109.46851 * 269.99492 * 3 2 1 5 5 H 1.08001 * 119.99929 * 0.02562 * 4 3 2 6 6 C 1.37868 * 119.99823 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00117 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00182 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46942 * 59.99928 * 8 6 4 10 10 H 1.48494 * 109.47468 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47273 * 300.00600 * 8 6 4 12 12 C 1.34780 * 119.99925 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00328 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99921 * 359.97438 * 12 2 1 15 15 C 1.53007 * 109.47220 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47184 * 180.02562 * 15 14 12 17 17 C 1.46423 * 110.99634 * 293.95278 * 16 15 14 18 18 C 1.53268 * 109.74385 * 198.04249 * 17 16 15 19 19 S 1.81867 * 108.44271 * 297.87315 * 18 17 16 20 20 C 1.81970 * 101.98277 * 51.35615 * 19 18 17 21 21 H 1.08997 * 109.70744 * 69.48199 * 20 19 18 22 22 C 1.53020 * 108.94785 * 189.60126 * 20 19 18 23 23 C 1.52954 * 109.61317 * 178.40630 * 22 20 19 24 24 C 1.53019 * 109.33577 * 299.76013 * 23 22 20 25 25 C 1.52945 * 109.32832 * 60.28407 * 24 23 22 26 26 C 1.46605 * 110.99876 * 60.04212 * 16 15 14 27 27 H 1.09007 * 109.45974 * 282.31227 * 26 16 15 28 28 H 1.08994 * 109.47145 * 270.00051 * 1 2 3 29 29 H 1.09000 * 109.46888 * 30.00678 * 1 2 3 30 30 H 1.08998 * 109.47174 * 150.00158 * 1 2 3 31 31 H 1.08997 * 109.47206 * 29.99568 * 3 2 1 32 32 H 1.09004 * 109.47268 * 150.00021 * 3 2 1 33 33 H 0.97002 * 120.00117 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47112 * 60.00589 * 14 12 2 35 35 H 1.08999 * 109.47276 * 300.00408 * 14 12 2 36 36 H 1.08996 * 109.46909 * 59.99814 * 15 14 12 37 37 H 1.09007 * 109.46863 * 299.99992 * 15 14 12 38 38 H 1.09001 * 109.42700 * 77.96218 * 17 16 15 39 39 H 1.08999 * 109.42827 * 318.12429 * 17 16 15 40 40 H 1.09002 * 109.64442 * 178.19162 * 18 17 16 41 41 H 1.09003 * 109.82077 * 57.66056 * 18 17 16 42 42 H 1.09002 * 109.44263 * 298.44332 * 22 20 19 43 43 H 1.09003 * 109.44453 * 58.37455 * 22 20 19 44 44 H 1.09004 * 109.49009 * 59.75648 * 23 22 20 45 45 H 1.09003 * 109.48971 * 179.83529 * 23 22 20 46 46 H 1.09006 * 109.51850 * 300.31411 * 24 23 22 47 47 H 1.09002 * 109.48757 * 180.23255 * 24 23 22 48 48 H 1.09003 * 109.44101 * 179.72573 * 25 24 23 49 49 H 1.09001 * 109.40705 * 59.81403 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2418 6 6 3.1261 2.8777 -1.6729 7 7 3.5534 3.6179 -0.6733 8 14 3.4370 3.4173 -3.4340 9 1 2.1392 3.5945 -4.1338 10 1 4.1796 4.7032 -3.4341 11 1 4.2397 2.3825 -4.1344 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 2.3795 -3.6353 0.0027 16 7 1.6450 -4.9075 0.0032 17 6 0.9016 -5.0836 1.2524 18 6 0.5249 -6.5589 1.4271 19 16 -0.5610 -7.0424 0.0507 20 6 0.3923 -6.4859 -1.3960 21 1 1.2794 -7.1082 -1.5132 22 6 -0.4864 -6.5994 -2.6436 23 6 0.2873 -6.0976 -3.8639 24 6 0.6750 -4.6328 -3.6508 25 6 1.5586 -4.5187 -2.4076 26 6 0.7908 -5.0214 -1.1828 27 1 -0.1060 -4.4175 -1.0438 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1383 0.5138 33 1 4.0303 4.4438 -0.8505 34 1 0.7584 -2.5307 -0.8881 35 1 0.7589 -2.5294 0.8919 36 1 3.0062 -3.5768 0.8926 37 1 3.0062 -3.5784 -0.8874 38 1 -0.0049 -4.4791 1.2231 39 1 1.5213 -4.7659 2.0909 40 1 -0.0003 -6.6935 2.3728 41 1 1.4249 -7.1739 1.4172 42 1 -0.7677 -7.6414 -2.7957 43 1 -1.3849 -5.9967 -2.5107 44 1 1.1879 -6.6974 -3.9954 45 1 -0.3393 -6.1821 -4.7518 46 1 -0.2254 -4.0340 -3.5133 47 1 1.2231 -4.2714 -4.5209 48 1 1.8399 -3.4764 -2.2568 49 1 2.4568 -5.1207 -2.5451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092800375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:34 Heat of formation + Delta-G solvation = -42.167275 kcal Electronic energy + Delta-G solvation = -27046.763136 eV Core-core repulsion = 23520.262857 eV Total energy + Delta-G solvation = -3526.500279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.19549 -38.75889 -36.63265 -34.85351 -32.80150 -32.40309 -30.88079 -30.59631 -28.66758 -27.42346 -25.78466 -24.20973 -23.35482 -22.81178 -22.41252 -20.49786 -19.84063 -18.38987 -17.04247 -16.64399 -16.54717 -16.13507 -15.39901 -15.32121 -14.94267 -14.84430 -14.71674 -14.50198 -14.22266 -13.80307 -13.46268 -13.16246 -12.87213 -12.67636 -12.43631 -12.42143 -12.23875 -12.17834 -12.02285 -11.86307 -11.73970 -11.55171 -11.45923 -11.20805 -10.94930 -10.87376 -10.76935 -10.59963 -10.58512 -10.37767 -10.18581 -9.72594 -9.67436 -8.99599 -8.51258 -8.45230 -7.88188 -7.68104 -6.06699 -4.11849 1.55044 2.31313 3.29523 3.33874 3.34667 3.40769 3.50224 3.96100 4.33790 4.42369 4.51415 4.60638 4.69482 4.85390 4.92348 4.93883 4.97799 5.08484 5.10402 5.14614 5.17791 5.20366 5.23288 5.28322 5.45979 5.49344 5.52399 5.57980 5.59979 5.69013 5.75033 5.81333 5.84976 5.87621 5.92322 5.95651 6.02999 6.16112 6.19375 6.27842 6.82051 6.92212 7.02527 7.40976 7.50300 7.89168 8.20521 8.38013 8.86744 9.05462 9.53343 11.01386 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.003209 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.220253 B = 8723.560800 C = 9690.672287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.507 3.493 13 O -0.542 6.542 14 C -0.178 4.178 15 C 0.073 3.927 16 N -0.546 5.546 17 C 0.052 3.948 18 C -0.073 4.073 19 S -0.285 6.285 20 C -0.029 4.029 21 H 0.095 0.905 22 C -0.100 4.100 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.122 4.122 26 C 0.092 3.908 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 -20.937 -0.191 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.293 3.707 13 O -0.420 6.420 14 C -0.220 4.220 15 C -0.054 4.054 16 N -0.269 5.269 17 C -0.077 4.077 18 C -0.221 4.221 19 S -0.055 6.055 20 C -0.158 4.158 21 H 0.114 0.886 22 C -0.140 4.140 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.017 4.017 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.049 -21.669 -0.056 23.886 hybrid contribution 0.561 1.640 -0.820 1.917 sum -9.488 -20.030 -0.875 22.180 Atomic orbital electron populations 1.21614 0.81578 1.02460 1.00312 1.48183 1.06093 1.07976 1.71234 1.19282 0.92518 0.78107 0.97495 1.21380 1.36680 1.06307 0.92237 0.92580 1.24935 0.95331 0.96364 0.97449 1.69922 1.38279 1.14365 1.30814 0.86561 0.78367 0.77871 0.84640 1.20248 1.21128 1.20147 1.20184 0.88046 0.84944 0.77572 1.90675 1.13814 1.87258 1.50225 1.22430 1.00675 0.95383 1.03499 1.22048 0.94897 0.83542 1.04925 1.61501 1.29332 1.34700 1.01382 1.22239 0.97929 0.94575 0.92949 1.23489 1.01438 0.99022 0.98195 1.86896 1.33928 1.81342 1.03350 1.23306 1.00071 0.98397 0.94037 0.88623 1.21398 0.98110 1.02133 0.92320 1.21544 1.00257 0.96512 0.96995 1.21557 0.99980 0.96390 0.97914 1.21866 0.98835 1.02458 0.92987 1.21813 0.95237 0.94118 0.90569 0.92515 0.93841 0.90751 0.92693 0.95105 0.93850 0.92628 0.89381 0.89864 0.89709 0.88908 0.93193 0.89416 0.87693 0.89083 0.91063 0.91000 0.91613 0.91388 0.91748 0.91208 0.90291 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.60 2.86 -182.95 -0.52 -13.13 16 3 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 4 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.51 10.16 7.67 -10.98 -0.08 10.07 16 13 O -0.54 -13.20 15.56 5.56 0.09 -13.12 16 14 C -0.18 -2.49 3.30 -27.88 -0.09 -2.58 16 15 C 0.07 0.97 4.01 -3.82 -0.02 0.96 16 16 N -0.55 -6.02 4.49 -226.91 -1.02 -7.04 16 17 C 0.05 0.51 4.67 -3.95 -0.02 0.49 16 18 C -0.07 -0.65 6.69 37.30 0.25 -0.40 16 19 S -0.28 -2.93 21.72 -107.50 -2.34 -5.27 16 20 C -0.03 -0.28 2.67 -26.59 -0.07 -0.35 16 21 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 22 C -0.10 -0.84 5.17 -26.74 -0.14 -0.98 16 23 C -0.11 -0.88 5.93 -26.74 -0.16 -1.04 16 24 C -0.12 -1.08 5.93 -26.75 -0.16 -1.24 16 25 C -0.12 -1.28 4.06 -26.74 -0.11 -1.39 16 26 C 0.09 0.96 1.05 -67.71 -0.07 0.88 16 27 H 0.06 0.63 7.12 -51.92 -0.37 0.26 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.05 0.71 6.44 -51.93 -0.33 0.37 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 1.15 5.11 -51.93 -0.27 0.88 16 35 H 0.08 1.03 6.95 -51.93 -0.36 0.67 16 36 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 37 H 0.09 1.36 6.17 -51.93 -0.32 1.04 16 38 H 0.05 0.50 7.19 -51.93 -0.37 0.13 16 39 H 0.09 0.81 7.81 -51.93 -0.41 0.40 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.98 5.20 -51.93 -0.27 0.71 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -31.94 379.29 -11.39 -43.33 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.53 Total: -0.55 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.50 Total: -0.83 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.80 Total: -46.01 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.34 Total: -5.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.94 -11.39 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092800375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.159 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds