Wall clock time and date at job start Tue Mar 31 2020 14:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00244 * 2 1 4 4 C 1.50708 * 109.46851 * 269.99492 * 3 2 1 5 5 H 1.08001 * 119.99929 * 0.02562 * 4 3 2 6 6 C 1.37868 * 119.99823 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00117 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00182 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46942 * 59.99928 * 8 6 4 10 10 H 1.48494 * 109.47468 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47273 * 300.00600 * 8 6 4 12 12 C 1.34780 * 119.99925 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00328 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99921 * 359.97438 * 12 2 1 15 15 C 1.53007 * 109.47220 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47184 * 180.02562 * 15 14 12 17 17 C 1.46423 * 110.99634 * 293.95278 * 16 15 14 18 18 C 1.53268 * 109.74385 * 198.04249 * 17 16 15 19 19 S 1.81867 * 108.44271 * 297.87315 * 18 17 16 20 20 C 1.81970 * 101.98277 * 51.35615 * 19 18 17 21 21 H 1.08997 * 109.70744 * 69.48199 * 20 19 18 22 22 C 1.53020 * 108.94785 * 189.60126 * 20 19 18 23 23 C 1.52954 * 109.61317 * 178.40630 * 22 20 19 24 24 C 1.53019 * 109.33577 * 299.76013 * 23 22 20 25 25 C 1.52945 * 109.32832 * 60.28407 * 24 23 22 26 26 C 1.46605 * 110.99876 * 60.04212 * 16 15 14 27 27 H 1.09007 * 109.45974 * 282.31227 * 26 16 15 28 28 H 1.08994 * 109.47145 * 270.00051 * 1 2 3 29 29 H 1.09000 * 109.46888 * 30.00678 * 1 2 3 30 30 H 1.08998 * 109.47174 * 150.00158 * 1 2 3 31 31 H 1.08997 * 109.47206 * 29.99568 * 3 2 1 32 32 H 1.09004 * 109.47268 * 150.00021 * 3 2 1 33 33 H 0.97002 * 120.00117 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47112 * 60.00589 * 14 12 2 35 35 H 1.08999 * 109.47276 * 300.00408 * 14 12 2 36 36 H 1.08996 * 109.46909 * 59.99814 * 15 14 12 37 37 H 1.09007 * 109.46863 * 299.99992 * 15 14 12 38 38 H 1.09001 * 109.42700 * 77.96218 * 17 16 15 39 39 H 1.08999 * 109.42827 * 318.12429 * 17 16 15 40 40 H 1.09002 * 109.64442 * 178.19162 * 18 17 16 41 41 H 1.09003 * 109.82077 * 57.66056 * 18 17 16 42 42 H 1.09002 * 109.44263 * 298.44332 * 22 20 19 43 43 H 1.09003 * 109.44453 * 58.37455 * 22 20 19 44 44 H 1.09004 * 109.49009 * 59.75648 * 23 22 20 45 45 H 1.09003 * 109.48971 * 179.83529 * 23 22 20 46 46 H 1.09006 * 109.51850 * 300.31411 * 24 23 22 47 47 H 1.09002 * 109.48757 * 180.23255 * 24 23 22 48 48 H 1.09003 * 109.44101 * 179.72573 * 25 24 23 49 49 H 1.09001 * 109.40705 * 59.81403 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2418 6 6 3.1261 2.8777 -1.6729 7 7 3.5534 3.6179 -0.6733 8 14 3.4370 3.4173 -3.4340 9 1 2.1392 3.5945 -4.1338 10 1 4.1796 4.7032 -3.4341 11 1 4.2397 2.3825 -4.1344 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 2.3795 -3.6353 0.0027 16 7 1.6450 -4.9075 0.0032 17 6 0.9016 -5.0836 1.2524 18 6 0.5249 -6.5589 1.4271 19 16 -0.5610 -7.0424 0.0507 20 6 0.3923 -6.4859 -1.3960 21 1 1.2794 -7.1082 -1.5132 22 6 -0.4864 -6.5994 -2.6436 23 6 0.2873 -6.0976 -3.8639 24 6 0.6750 -4.6328 -3.6508 25 6 1.5586 -4.5187 -2.4076 26 6 0.7908 -5.0214 -1.1828 27 1 -0.1060 -4.4175 -1.0438 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1383 0.5138 33 1 4.0303 4.4438 -0.8505 34 1 0.7584 -2.5307 -0.8881 35 1 0.7589 -2.5294 0.8919 36 1 3.0062 -3.5768 0.8926 37 1 3.0062 -3.5784 -0.8874 38 1 -0.0049 -4.4791 1.2231 39 1 1.5213 -4.7659 2.0909 40 1 -0.0003 -6.6935 2.3728 41 1 1.4249 -7.1739 1.4172 42 1 -0.7677 -7.6414 -2.7957 43 1 -1.3849 -5.9967 -2.5107 44 1 1.1879 -6.6974 -3.9954 45 1 -0.3393 -6.1821 -4.7518 46 1 -0.2254 -4.0340 -3.5133 47 1 1.2231 -4.2714 -4.5209 48 1 1.8399 -3.4764 -2.2568 49 1 2.4568 -5.1207 -2.5451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092800375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:33 Heat of formation + Delta-G solvation = -61.482213 kcal Electronic energy + Delta-G solvation = -27047.600694 eV Core-core repulsion = 23520.262857 eV Total energy + Delta-G solvation = -3527.337837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27661 -40.15540 -37.47720 -36.60144 -34.76810 -33.50646 -31.61757 -31.57370 -30.10178 -28.82715 -27.30802 -25.60694 -24.21760 -24.02402 -23.49640 -21.32846 -20.79317 -19.84543 -18.71869 -18.02685 -17.87890 -17.10891 -17.08220 -16.46019 -16.27364 -15.93738 -15.80164 -15.43133 -15.24374 -14.95921 -14.45923 -14.21067 -14.16112 -13.89085 -13.82574 -13.48656 -13.43012 -13.34441 -13.17381 -13.06300 -12.96042 -12.89381 -12.70850 -12.51893 -12.34064 -12.21535 -12.20366 -11.86024 -11.73079 -11.56312 -11.36166 -11.11029 -10.66472 -10.65637 -10.49722 -9.44997 -9.43793 -8.67980 -8.23839 -6.39129 0.80434 1.35717 1.39941 1.47288 1.56324 1.80350 2.28228 2.42036 2.69224 3.05721 3.53771 3.68982 3.78157 3.84255 3.91777 3.99769 4.04015 4.12885 4.19566 4.23466 4.27813 4.33223 4.38156 4.43162 4.45306 4.53177 4.65394 4.72164 4.76887 4.81869 4.85099 4.90232 4.92280 4.98188 5.02977 5.12639 5.14242 5.17048 5.20673 5.25509 5.30301 5.47308 5.53610 5.81384 5.88709 6.04094 6.06002 6.67310 6.76423 7.26482 7.45747 8.83126 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.003209 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.220253 B = 8723.560800 C = 9690.672287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.498 3.502 13 O -0.595 6.595 14 C -0.155 4.155 15 C 0.084 3.916 16 N -0.546 5.546 17 C 0.050 3.950 18 C -0.065 4.065 19 S -0.305 6.305 20 C -0.022 4.022 21 H 0.089 0.911 22 C -0.096 4.096 23 C -0.108 4.108 24 C -0.119 4.119 25 C -0.119 4.119 26 C 0.096 3.904 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.022 0.978 32 H -0.002 1.002 33 H 0.267 0.733 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 -22.323 -1.202 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.287 3.713 13 O -0.476 6.476 14 C -0.197 4.197 15 C -0.044 4.044 16 N -0.269 5.269 17 C -0.079 4.079 18 C -0.213 4.213 19 S -0.076 6.076 20 C -0.151 4.151 21 H 0.107 0.893 22 C -0.135 4.135 23 C -0.147 4.147 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.014 4.014 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.091 -23.082 -1.061 26.079 hybrid contribution 1.181 2.038 -0.438 2.396 sum -10.910 -21.044 -1.499 23.751 Atomic orbital electron populations 1.21891 0.78091 1.03790 1.02459 1.48217 1.08284 1.06548 1.71204 1.18742 0.91038 0.80417 0.96037 1.21669 1.36977 1.06596 0.93002 0.92823 1.25870 0.94866 0.96398 1.02023 1.70046 1.38847 1.14817 1.33152 0.85477 0.78888 0.77402 0.79122 1.18402 1.20344 1.20210 1.21208 0.87781 0.86387 0.75916 1.90645 1.16460 1.88137 1.52399 1.22336 1.00386 0.91600 1.05354 1.21823 0.94722 0.84350 1.03537 1.61507 1.30017 1.32927 1.02419 1.22324 0.97933 0.95314 0.92333 1.23504 1.01273 0.98194 0.98378 1.86987 1.34621 1.81615 1.04329 1.23268 0.99995 0.97422 0.94439 0.89267 1.21387 0.97765 1.02569 0.91778 1.21511 1.00544 0.95376 0.97292 1.21553 0.99637 0.97490 0.97015 1.21807 0.99083 1.00925 0.94027 1.21809 0.94770 0.94742 0.90049 0.92623 0.91213 0.91548 0.89255 0.96039 0.98437 0.92368 0.87743 0.87233 0.90836 0.90748 0.92822 0.88763 0.85884 0.89172 0.90413 0.91078 0.91425 0.89919 0.91566 0.91233 0.92433 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.61 -25.67 2.86 -851.12 -2.43 -28.10 16 3 C 0.26 14.04 5.16 85.64 0.44 14.48 16 4 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -56.39 13.29 21.44 0.28 -56.11 16 8 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.50 20.17 7.67 87.66 0.67 20.84 16 13 O -0.59 -30.24 15.56 -3.04 -0.05 -30.29 16 14 C -0.16 -4.12 3.30 29.85 0.10 -4.02 16 15 C 0.08 2.19 4.01 86.31 0.35 2.53 16 16 N -0.55 -11.27 4.49 -871.82 -3.91 -15.19 16 17 C 0.05 0.86 4.67 86.48 0.40 1.26 16 18 C -0.07 -1.01 6.69 72.07 0.48 -0.53 16 19 S -0.30 -5.64 21.72 -56.49 -1.23 -6.86 16 20 C -0.02 -0.39 2.67 30.69 0.08 -0.30 16 21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 22 C -0.10 -1.38 5.17 30.59 0.16 -1.22 16 23 C -0.11 -1.42 5.93 30.59 0.18 -1.24 16 24 C -0.12 -1.95 5.93 30.58 0.18 -1.76 16 25 C -0.12 -2.40 4.06 30.59 0.12 -2.27 16 26 C 0.10 1.82 1.05 45.07 0.05 1.87 16 27 H 0.06 1.10 7.12 -2.38 -0.02 1.08 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 30 H 0.09 2.00 6.44 -2.39 -0.02 1.99 16 31 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.00 -0.16 7.42 -2.38 -0.02 -0.17 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.10 2.48 5.11 -2.38 -0.01 2.47 16 35 H 0.11 2.38 6.95 -2.39 -0.02 2.36 16 36 H 0.07 2.09 7.89 -2.39 -0.02 2.07 16 37 H 0.07 2.23 6.17 -2.38 -0.01 2.22 16 38 H 0.05 0.91 7.19 -2.39 -0.02 0.89 16 39 H 0.09 1.53 7.81 -2.39 -0.02 1.51 16 40 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 48 H 0.06 1.41 5.20 -2.39 -0.01 1.40 16 49 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.75 379.29 0.84 -70.92 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.91 Total: 15.85 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.23 Total: 3.04 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -6.06 Total: -99.40 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.23 Total: -6.86 kcal Total: -71.75 0.84 -70.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092800375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.435 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds