Wall clock time and date at job start Tue Mar 31 2020 14:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38319 * 119.87904 * 2 1 4 4 C 1.38022 * 120.11980 * 179.97438 * 3 2 1 5 5 C 1.39328 * 119.87913 * 359.97438 * 4 3 2 6 6 C 1.48418 * 120.11968 * 179.97438 * 5 4 3 7 7 N 1.31625 * 126.03563 * 317.76299 * 6 5 4 8 8 N 1.40074 * 108.10526 * 180.29565 * 7 6 5 9 9 H 0.96997 * 125.92729 * 179.68157 * 8 7 6 10 10 C 1.35033 * 108.13758 * 359.71451 * 8 7 6 11 11 C 1.35085 * 107.98352 * 359.97438 * 10 8 7 12 12 C 1.50700 * 126.07645 * 179.97438 * 11 10 8 13 13 N 1.46902 * 109.46949 * 104.31468 * 12 11 10 14 14 C 1.46893 * 110.99929 * 184.10165 * 13 12 11 15 15 C 1.53237 * 109.33891 * 187.25658 * 14 13 12 16 16 N 1.47080 * 108.52205 * 306.16426 * 15 14 13 17 17 C 1.36929 * 120.88768 * 231.18589 * 16 15 14 18 18 H 1.08004 * 119.99691 * 27.68259 * 17 16 15 19 19 C 1.38813 * 120.00452 * 207.40640 * 17 16 15 20 20 N 1.31624 * 119.99774 * 17.52475 * 19 17 16 21 21 Si 1.86801 * 120.00142 * 197.52594 * 19 17 16 22 22 H 1.48495 * 109.47212 * 94.97940 * 21 19 17 23 23 H 1.48501 * 109.46850 * 214.98012 * 21 19 17 24 24 H 1.48499 * 109.47059 * 334.97845 * 21 19 17 25 25 C 1.47084 * 118.23162 * 51.46234 * 16 15 14 26 26 C 1.46894 * 111.00200 * 308.40490 * 13 12 11 27 27 C 1.39321 * 119.75928 * 0.25245 * 5 4 3 28 28 C 1.38021 * 119.88036 * 359.47424 * 27 5 4 29 29 H 1.08998 * 109.47006 * 90.00312 * 1 2 3 30 30 H 1.09007 * 109.47059 * 209.99980 * 1 2 3 31 31 H 1.08992 * 109.47310 * 330.00157 * 1 2 3 32 32 H 1.08002 * 119.93753 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.06080 * 179.97438 * 4 3 2 34 34 H 1.08002 * 126.00778 * 180.02562 * 10 8 7 35 35 H 1.09003 * 109.47249 * 344.31557 * 12 11 10 36 36 H 1.09004 * 109.46991 * 224.31206 * 12 11 10 37 37 H 1.08999 * 109.49653 * 67.29459 * 14 13 12 38 38 H 1.09013 * 109.49485 * 307.21003 * 14 13 12 39 39 H 1.09005 * 109.63080 * 186.46351 * 15 14 13 40 40 H 1.09003 * 109.79385 * 65.97651 * 15 14 13 41 41 H 0.96996 * 119.99612 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.63141 * 68.25199 * 25 16 15 43 43 H 1.08997 * 109.62845 * 188.83119 * 25 16 15 44 44 H 1.09002 * 109.49177 * 292.70717 * 26 13 12 45 45 H 1.09000 * 109.49377 * 52.75384 * 26 13 12 46 46 H 1.07999 * 120.05785 * 179.72718 * 27 5 4 47 47 H 1.08000 * 119.94295 * 180.27254 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5763 1.2051 0.0005 5 6 4.2754 0.0000 0.0016 6 6 5.7596 0.0000 0.0016 7 7 6.5340 0.7874 -0.7146 8 7 7.8666 0.4638 -0.4295 9 1 8.6499 0.8830 -0.8188 10 6 7.8716 -0.5336 0.4808 11 6 6.5882 -0.8398 0.7709 12 6 6.1254 -1.8976 1.7394 13 7 5.6576 -1.2579 2.9763 14 6 5.2891 -2.2632 3.9820 15 6 4.6396 -1.5660 5.1821 16 7 5.5492 -0.5134 5.6594 17 6 5.9007 -0.4341 6.9805 18 1 5.9097 -1.3247 7.5913 19 6 6.2510 0.7901 7.5332 20 7 5.9252 1.9073 6.9182 21 14 7.1849 0.8520 9.1499 22 1 8.6406 0.9587 8.8768 23 1 6.7403 2.0326 9.9334 24 1 6.9160 -0.3860 9.9246 25 6 6.0663 0.4556 4.6812 26 6 6.6642 -0.3248 3.4997 27 6 3.5763 -1.2051 -0.0032 28 6 2.1961 -1.1994 0.0020 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6531 2.1329 -0.0004 33 1 4.1133 2.1421 0.0001 34 1 8.7475 -1.0034 0.9032 35 1 6.9537 -2.5683 1.9680 36 1 5.3095 -2.4665 1.2935 37 1 6.1826 -2.7945 4.3097 38 1 4.5834 -2.9712 3.5470 39 1 4.4686 -2.2907 5.9782 40 1 3.6907 -1.1215 4.8817 41 1 6.1703 2.7627 7.3043 42 1 5.2532 1.0911 4.3302 43 1 6.8390 1.0680 5.1457 44 1 7.5386 -0.8830 3.8341 45 1 6.9564 0.3728 2.7148 46 1 4.1134 -2.1421 -0.0068 47 1 1.6532 -2.1329 0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:50 Heat of formation + Delta-G solvation = 132.176411 kcal Electronic energy + Delta-G solvation = -28079.126340 eV Core-core repulsion = 24457.034971 eV Total energy + Delta-G solvation = -3622.091370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25365 -38.93598 -37.85868 -34.55287 -33.50205 -31.79287 -30.86477 -30.70546 -30.03110 -29.75278 -26.97076 -26.73179 -24.42865 -22.65965 -22.45068 -22.30249 -22.03224 -20.41706 -19.54859 -18.98133 -17.62865 -16.62876 -16.05380 -15.41951 -15.12860 -15.01638 -14.57614 -14.26832 -14.13044 -14.03070 -13.69471 -13.58534 -13.34874 -13.28582 -13.02323 -12.92769 -12.65756 -12.21944 -12.09822 -11.93393 -11.64967 -11.35988 -11.08094 -11.01661 -10.91472 -10.71503 -10.50423 -10.39793 -10.21212 -9.98240 -9.69844 -9.67065 -9.49439 -8.74344 -8.55879 -8.44150 -8.09605 -7.60643 -6.57872 -5.71952 -3.13203 1.22572 1.61107 1.99323 2.80843 2.89889 3.40045 3.47040 3.48718 3.97780 4.52373 4.54807 4.64847 4.89732 4.95516 4.99803 5.15193 5.31563 5.35154 5.41811 5.45290 5.55522 5.56267 5.59027 5.71990 5.77199 5.85251 5.90931 5.99326 6.03714 6.15484 6.21433 6.24053 6.27163 6.37007 6.40004 6.45261 6.64728 6.70981 6.72448 6.74116 6.81930 7.04205 7.13731 7.27653 7.34460 7.67519 7.74457 7.77135 7.83011 7.92379 8.50327 9.27794 9.91753 10.51493 11.36506 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.003895 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.647670 B = 7187.656758 C = 8259.946553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.085 4.085 5 C -0.002 4.002 6 C 0.137 3.863 7 N -0.289 5.289 8 N -0.478 5.478 9 H 0.439 0.561 10 C 0.059 3.941 11 C -0.205 4.205 12 C 0.127 3.873 13 N -0.521 5.521 14 C 0.046 3.954 15 C 0.150 3.850 16 N -0.595 5.595 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.182 3.818 26 C 0.041 3.959 27 C -0.083 4.083 28 C -0.121 4.121 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.174 0.826 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.025 0.975 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.025 0.975 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.082 0.918 44 H 0.019 0.981 45 H 0.059 0.941 46 H 0.123 0.877 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -6.350 -17.723 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.104 4.104 5 C -0.004 4.004 6 C -0.028 4.028 7 N -0.112 5.112 8 N -0.185 5.185 9 H 0.282 0.718 10 C -0.088 4.088 11 C -0.217 4.217 12 C -0.002 4.002 13 N -0.246 5.246 14 C -0.083 4.083 15 C 0.023 3.977 16 N -0.318 5.318 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.056 3.944 26 C -0.089 4.089 27 C -0.103 4.103 28 C -0.139 4.139 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.191 0.809 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.100 0.900 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.141 0.859 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.645 -4.979 -18.588 19.424 hybrid contribution 1.918 -0.676 1.554 2.560 sum -0.727 -5.656 -17.033 17.962 Atomic orbital electron populations 1.20786 0.91460 1.02857 1.01911 1.19928 0.95905 0.93236 0.99336 1.20897 0.93840 0.97532 1.01653 1.21122 0.93976 0.97305 0.98003 1.17617 0.87575 0.93688 1.01560 1.20552 0.93152 0.94107 0.95018 1.77544 0.86648 1.22869 1.24117 1.46110 1.07148 1.29985 1.35300 0.71767 1.22310 0.99216 0.93044 0.94273 1.19964 0.91212 1.05267 1.05248 1.20444 0.97896 0.92318 0.89529 1.62009 1.41493 1.17632 1.03493 1.22587 0.98642 0.93392 0.93695 1.20952 0.92547 0.91468 0.92722 1.44135 1.51236 1.31825 1.04613 1.19207 1.40016 0.92470 0.86315 0.91740 1.25022 1.01372 0.95506 0.97794 1.70055 1.47798 0.96641 1.40166 0.86303 0.79943 0.77145 0.83591 1.21657 1.21806 1.20423 1.20889 0.97422 0.90133 0.85984 1.22900 0.92446 0.95163 0.98344 1.21015 0.93843 0.96950 0.98468 1.20847 0.93748 0.97426 1.01859 0.91485 0.91563 0.91570 0.86102 0.86024 0.80915 0.95245 0.90573 0.95660 0.92151 0.92858 0.95728 0.93748 0.95744 0.89974 0.96303 0.92271 0.85936 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.08 -1.01 5.88 -104.56 -0.62 -1.63 16 3 C -0.12 -1.58 9.68 -39.63 -0.38 -1.96 16 4 C -0.08 -1.25 9.78 -39.26 -0.38 -1.63 16 5 C 0.00 -0.04 5.74 -104.90 -0.60 -0.64 16 6 C 0.14 2.11 6.67 -82.78 -0.55 1.56 16 7 N -0.29 -4.32 12.74 33.43 0.43 -3.90 16 8 N -0.48 -5.58 7.35 30.42 0.22 -5.36 16 9 H 0.44 3.51 8.96 -182.62 -1.64 1.88 16 10 C 0.06 0.70 11.23 -17.26 -0.19 0.51 16 11 C -0.21 -2.95 3.93 -104.76 -0.41 -3.36 16 12 C 0.13 1.85 5.14 -4.98 -0.03 1.82 16 13 N -0.52 -9.44 4.73 -235.47 -1.11 -10.55 16 14 C 0.05 0.84 5.61 -3.71 -0.02 0.82 16 15 C 0.15 3.28 6.69 -3.60 -0.02 3.25 16 16 N -0.59 -15.45 3.03 -171.73 -0.52 -15.97 16 17 C -0.25 -7.03 9.62 -15.06 -0.14 -7.17 16 18 H 0.06 1.78 7.89 -52.48 -0.41 1.36 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 20 N -0.90 -26.85 11.23 55.49 0.62 -26.23 16 21 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.18 4.57 5.44 -3.36 -0.02 4.55 16 26 C 0.04 0.82 5.33 -3.47 -0.02 0.81 16 27 C -0.08 -1.11 8.87 -39.26 -0.35 -1.46 16 28 C -0.12 -1.46 9.68 -39.63 -0.38 -1.84 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.08 1.02 5.67 -51.93 -0.29 0.72 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.94 8.11 -51.92 -0.42 0.51 16 39 H 0.05 1.12 7.95 -51.93 -0.41 0.70 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 2.28 6.18 -51.93 -0.32 1.96 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 1.17 6.14 -51.93 -0.32 0.85 16 46 H 0.12 1.46 6.20 -52.49 -0.33 1.13 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -33.26 376.86 -11.91 -45.17 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.35 Total: 1.25 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.85 Total: -7.09 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.36 Total: -62.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.26 -11.91 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.344 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds