Wall clock time and date at job start Tue Mar 31 2020 14:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38319 * 119.87904 * 2 1 4 4 C 1.38022 * 120.11980 * 179.97438 * 3 2 1 5 5 C 1.39328 * 119.87913 * 359.97438 * 4 3 2 6 6 C 1.48418 * 120.11968 * 179.97438 * 5 4 3 7 7 N 1.31625 * 126.03563 * 317.76299 * 6 5 4 8 8 N 1.40074 * 108.10526 * 180.29565 * 7 6 5 9 9 H 0.96997 * 125.92729 * 179.68157 * 8 7 6 10 10 C 1.35033 * 108.13758 * 359.71451 * 8 7 6 11 11 C 1.35085 * 107.98352 * 359.97438 * 10 8 7 12 12 C 1.50700 * 126.07645 * 179.97438 * 11 10 8 13 13 N 1.46902 * 109.46949 * 104.31468 * 12 11 10 14 14 C 1.46893 * 110.99929 * 184.10165 * 13 12 11 15 15 C 1.53237 * 109.33891 * 187.25658 * 14 13 12 16 16 N 1.47080 * 108.52205 * 306.16426 * 15 14 13 17 17 C 1.36929 * 120.88768 * 231.18589 * 16 15 14 18 18 H 1.08004 * 119.99691 * 27.68259 * 17 16 15 19 19 C 1.38813 * 120.00452 * 207.40640 * 17 16 15 20 20 N 1.31624 * 119.99774 * 17.52475 * 19 17 16 21 21 Si 1.86801 * 120.00142 * 197.52594 * 19 17 16 22 22 H 1.48495 * 109.47212 * 94.97940 * 21 19 17 23 23 H 1.48501 * 109.46850 * 214.98012 * 21 19 17 24 24 H 1.48499 * 109.47059 * 334.97845 * 21 19 17 25 25 C 1.47084 * 118.23162 * 51.46234 * 16 15 14 26 26 C 1.46894 * 111.00200 * 308.40490 * 13 12 11 27 27 C 1.39321 * 119.75928 * 0.25245 * 5 4 3 28 28 C 1.38021 * 119.88036 * 359.47424 * 27 5 4 29 29 H 1.08998 * 109.47006 * 90.00312 * 1 2 3 30 30 H 1.09007 * 109.47059 * 209.99980 * 1 2 3 31 31 H 1.08992 * 109.47310 * 330.00157 * 1 2 3 32 32 H 1.08002 * 119.93753 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.06080 * 179.97438 * 4 3 2 34 34 H 1.08002 * 126.00778 * 180.02562 * 10 8 7 35 35 H 1.09003 * 109.47249 * 344.31557 * 12 11 10 36 36 H 1.09004 * 109.46991 * 224.31206 * 12 11 10 37 37 H 1.08999 * 109.49653 * 67.29459 * 14 13 12 38 38 H 1.09013 * 109.49485 * 307.21003 * 14 13 12 39 39 H 1.09005 * 109.63080 * 186.46351 * 15 14 13 40 40 H 1.09003 * 109.79385 * 65.97651 * 15 14 13 41 41 H 0.96996 * 119.99612 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.63141 * 68.25199 * 25 16 15 43 43 H 1.08997 * 109.62845 * 188.83119 * 25 16 15 44 44 H 1.09002 * 109.49177 * 292.70717 * 26 13 12 45 45 H 1.09000 * 109.49377 * 52.75384 * 26 13 12 46 46 H 1.07999 * 120.05785 * 179.72718 * 27 5 4 47 47 H 1.08000 * 119.94295 * 180.27254 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5763 1.2051 0.0005 5 6 4.2754 0.0000 0.0016 6 6 5.7596 0.0000 0.0016 7 7 6.5340 0.7874 -0.7146 8 7 7.8666 0.4638 -0.4295 9 1 8.6499 0.8830 -0.8188 10 6 7.8716 -0.5336 0.4808 11 6 6.5882 -0.8398 0.7709 12 6 6.1254 -1.8976 1.7394 13 7 5.6576 -1.2579 2.9763 14 6 5.2891 -2.2632 3.9820 15 6 4.6396 -1.5660 5.1821 16 7 5.5492 -0.5134 5.6594 17 6 5.9007 -0.4341 6.9805 18 1 5.9097 -1.3247 7.5913 19 6 6.2510 0.7901 7.5332 20 7 5.9252 1.9073 6.9182 21 14 7.1849 0.8520 9.1499 22 1 8.6406 0.9587 8.8768 23 1 6.7403 2.0326 9.9334 24 1 6.9160 -0.3860 9.9246 25 6 6.0663 0.4556 4.6812 26 6 6.6642 -0.3248 3.4997 27 6 3.5763 -1.2051 -0.0032 28 6 2.1961 -1.1994 0.0020 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6531 2.1329 -0.0004 33 1 4.1133 2.1421 0.0001 34 1 8.7475 -1.0034 0.9032 35 1 6.9537 -2.5683 1.9680 36 1 5.3095 -2.4665 1.2935 37 1 6.1826 -2.7945 4.3097 38 1 4.5834 -2.9712 3.5470 39 1 4.4686 -2.2907 5.9782 40 1 3.6907 -1.1215 4.8817 41 1 6.1703 2.7627 7.3043 42 1 5.2532 1.0911 4.3302 43 1 6.8390 1.0680 5.1457 44 1 7.5386 -0.8830 3.8341 45 1 6.9564 0.3728 2.7148 46 1 4.1134 -2.1421 -0.0068 47 1 1.6532 -2.1329 0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:49 Heat of formation + Delta-G solvation = 111.385112 kcal Electronic energy + Delta-G solvation = -28080.027919 eV Core-core repulsion = 24457.034971 eV Total energy + Delta-G solvation = -3622.992948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27237 -39.89715 -39.46387 -36.28439 -34.51342 -33.52059 -31.91567 -31.75795 -31.58599 -31.27601 -28.53137 -27.68542 -26.06410 -24.19665 -23.95514 -23.54164 -23.12959 -21.42424 -20.80874 -20.51784 -18.85663 -18.41142 -17.08923 -16.97594 -16.35880 -16.10502 -16.07102 -15.67074 -15.50895 -15.28510 -15.20695 -14.90419 -14.71108 -14.49439 -14.40862 -14.26192 -13.72801 -13.51831 -13.11002 -13.05950 -12.97302 -12.85740 -12.80568 -12.60882 -12.28639 -12.08346 -11.99528 -11.91507 -11.79121 -11.58087 -11.50566 -11.36136 -10.67089 -10.58049 -9.74857 -9.60120 -9.14452 -9.00172 -8.63309 -7.85925 -5.31497 0.22017 0.60549 1.01877 1.46273 1.46836 1.57076 1.76353 2.00063 2.51460 2.97382 3.22991 3.30780 3.57476 3.73088 3.92871 4.04462 4.10453 4.16904 4.24491 4.38486 4.42761 4.43633 4.53017 4.59145 4.65551 4.66714 4.74368 4.78670 4.84316 4.92183 4.94350 4.96189 5.04139 5.07918 5.19370 5.24343 5.26364 5.33048 5.39414 5.41156 5.62830 5.68475 5.69762 5.71280 5.77378 6.17885 6.30714 6.39809 6.43242 6.44781 6.69562 7.14242 7.85888 8.41446 9.20593 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.003895 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.647670 B = 7187.656758 C = 8259.946553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.133 4.133 4 C -0.110 4.110 5 C -0.025 4.025 6 C 0.124 3.876 7 N -0.321 5.321 8 N -0.466 5.466 9 H 0.454 0.546 10 C 0.075 3.925 11 C -0.233 4.233 12 C 0.134 3.866 13 N -0.533 5.533 14 C 0.058 3.942 15 C 0.145 3.855 16 N -0.612 5.612 17 C -0.262 4.262 18 H 0.070 0.930 19 C -0.052 4.052 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.192 3.808 26 C 0.066 3.934 27 C -0.089 4.089 28 C -0.123 4.123 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.209 0.791 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.028 0.972 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.009 0.991 41 H 0.248 0.752 42 H -0.015 1.015 43 H 0.048 0.952 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.137 0.863 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 -8.888 -18.225 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.129 4.129 5 C -0.027 4.027 6 C -0.041 4.041 7 N -0.145 5.145 8 N -0.175 5.175 9 H 0.300 0.700 10 C -0.073 4.073 11 C -0.245 4.245 12 C 0.006 3.994 13 N -0.258 5.258 14 C -0.071 4.071 15 C 0.019 3.981 16 N -0.336 5.336 17 C -0.392 4.392 18 H 0.087 0.913 19 C -0.247 4.247 20 N -0.584 5.584 21 Si 0.796 3.204 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.190 1.190 25 C 0.066 3.934 26 C -0.064 4.064 27 C -0.108 4.108 28 C -0.141 4.141 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.003 0.997 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.081 0.919 46 H 0.155 0.845 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.289 -7.543 -19.124 20.685 hybrid contribution 1.749 0.126 1.656 2.412 sum -0.540 -7.417 -17.468 18.985 Atomic orbital electron populations 1.20835 0.89247 1.03534 1.03176 1.20322 0.97603 0.92841 0.98172 1.21140 0.93387 0.98870 1.01664 1.21193 0.94938 0.97089 0.99705 1.17858 0.87927 0.94347 1.02537 1.20761 0.93528 0.94471 0.95378 1.77484 0.88023 1.23753 1.25221 1.46162 1.06821 1.29644 1.34872 0.69952 1.22822 0.99627 0.91949 0.92938 1.20071 0.92010 1.06194 1.06184 1.20447 0.99093 0.92401 0.87449 1.61906 1.41204 1.18095 1.04603 1.22425 0.99188 0.93176 0.92289 1.21123 0.91601 0.90647 0.94712 1.44413 1.52304 1.32575 1.04293 1.19579 1.39563 0.92672 0.87399 0.91268 1.25823 1.02448 0.95106 1.01349 1.70232 1.49237 0.97015 1.41959 0.85236 0.78355 0.77223 0.79574 1.21303 1.22302 1.18963 1.20590 0.95145 0.90175 0.87468 1.22432 0.92414 0.95316 0.96205 1.21229 0.94506 0.96816 0.98289 1.21229 0.93543 0.98581 1.00717 0.89818 0.90424 0.91375 0.84865 0.87440 0.77483 0.93417 0.89065 0.95415 0.88624 0.92122 0.97321 0.94261 0.99711 0.93319 0.96137 0.91889 0.84546 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.24 0.71 -1.11 16 2 C -0.09 -2.05 5.88 -19.82 -0.12 -2.17 16 3 C -0.13 -3.50 9.68 22.24 0.22 -3.29 16 4 C -0.11 -3.39 9.78 22.48 0.22 -3.17 16 5 C -0.02 -0.75 5.74 -20.04 -0.12 -0.86 16 6 C 0.12 3.77 6.67 42.53 0.28 4.05 16 7 N -0.32 -9.61 12.74 -48.16 -0.61 -10.22 16 8 N -0.47 -10.22 7.35 -57.68 -0.42 -10.64 16 9 H 0.45 6.54 8.96 -213.34 -1.91 4.62 16 10 C 0.08 1.61 11.23 83.47 0.94 2.55 16 11 C -0.23 -6.27 3.93 -19.95 -0.08 -6.35 16 12 C 0.13 3.52 5.14 85.56 0.44 3.96 16 13 N -0.53 -18.42 4.73 -898.89 -4.25 -22.67 16 14 C 0.06 1.97 5.61 86.38 0.49 2.46 16 15 C 0.14 6.25 6.69 86.35 0.58 6.83 16 16 N -0.61 -32.20 3.03 -697.23 -2.11 -34.31 16 17 C -0.26 -14.82 9.62 84.04 0.81 -14.01 16 18 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 19 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 20 N -0.94 -57.75 11.23 21.65 0.24 -57.51 16 21 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.19 10.00 5.44 86.50 0.47 10.47 16 26 C 0.07 2.64 5.33 86.54 0.46 3.10 16 27 C -0.09 -2.26 8.87 22.48 0.20 -2.06 16 28 C -0.12 -2.75 9.68 22.24 0.22 -2.53 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.10 8.08 -2.38 -0.02 1.08 16 31 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.21 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.09 2.13 5.67 -2.39 -0.01 2.12 16 37 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 2.60 8.11 -2.38 -0.02 2.58 16 39 H 0.06 2.48 7.95 -2.38 -0.02 2.46 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 42 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 43 H 0.05 2.82 6.18 -2.39 -0.01 2.81 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 2.47 6.14 -2.39 -0.01 2.46 16 46 H 0.14 2.95 6.20 -2.91 -0.02 2.93 16 47 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -74.56 376.86 0.07 -74.49 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.93 Total: 17.84 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 6.13 Total: -4.70 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -7.16 Total: -135.36 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.56 0.07 -74.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.872 kcal (2) G-P(sol) polarization free energy of solvation -74.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds