Wall clock time and date at job start Tue Mar 31 2020 14:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30876 * 125.88395 * 2 1 4 4 N 1.40084 * 108.22028 * 180.23486 * 3 2 1 5 5 C 1.40182 * 126.05018 * 179.77667 * 4 3 2 6 6 C 1.38836 * 120.06508 * 179.68226 * 5 4 3 7 7 C 1.38125 * 119.93264 * 179.71972 * 6 5 4 8 8 C 1.38277 * 120.06666 * 0.54947 * 7 6 5 9 9 C 1.38278 * 120.13268 * 359.72630 * 8 7 6 10 10 C 1.38120 * 120.06757 * 359.97438 * 9 8 7 11 11 C 1.35222 * 107.89410 * 359.73317 * 4 3 2 12 12 C 1.35325 * 107.71378 * 0.02562 * 11 4 3 13 13 C 1.50698 * 126.03309 * 179.97438 * 12 11 4 14 14 N 1.46901 * 109.46832 * 106.39784 * 13 12 11 15 15 C 1.46895 * 110.99602 * 182.98487 * 14 13 12 16 16 C 1.53242 * 109.33943 * 187.25286 * 15 14 13 17 17 N 1.47075 * 108.52235 * 306.17442 * 16 15 14 18 18 C 1.36936 * 120.87936 * 231.18302 * 17 16 15 19 19 H 1.08003 * 120.00319 * 32.13144 * 18 17 16 20 20 C 1.38809 * 119.99867 * 211.85198 * 18 17 16 21 21 N 1.31619 * 120.00387 * 15.83280 * 20 18 17 22 22 Si 1.86806 * 120.00052 * 195.82578 * 20 18 17 23 23 H 1.48501 * 109.46727 * 90.00291 * 22 20 18 24 24 H 1.48498 * 109.47384 * 210.00076 * 22 20 18 25 25 H 1.48494 * 109.47332 * 330.00504 * 22 20 18 26 26 C 1.47078 * 118.23702 * 51.45678 * 17 16 15 27 27 C 1.46893 * 111.00132 * 307.28859 * 14 13 12 28 28 H 1.09000 * 109.46968 * 274.15142 * 1 2 3 29 29 H 1.09001 * 109.46603 * 34.14709 * 1 2 3 30 30 H 1.08992 * 109.46983 * 154.14476 * 1 2 3 31 31 H 1.08002 * 120.03701 * 359.97438 * 6 5 4 32 32 H 1.07996 * 119.96520 * 180.27490 * 7 6 5 33 33 H 1.08000 * 119.93650 * 179.74283 * 8 7 6 34 34 H 1.07997 * 119.96863 * 180.02562 * 9 8 7 35 35 H 1.08003 * 120.03396 * 180.02562 * 10 9 8 36 36 H 1.08003 * 126.14306 * 180.02562 * 11 4 3 37 37 H 1.08999 * 109.47214 * 346.39924 * 13 12 11 38 38 H 1.09000 * 109.46559 * 226.39691 * 13 12 11 39 39 H 1.08998 * 109.49300 * 67.29727 * 15 14 13 40 40 H 1.08999 * 109.52033 * 307.22587 * 15 14 13 41 41 H 1.08997 * 109.62944 * 186.45953 * 16 15 14 42 42 H 1.09009 * 109.78871 * 65.97786 * 16 15 14 43 43 H 0.96998 * 120.00448 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.63383 * 68.25317 * 26 17 16 45 45 H 1.09007 * 109.62837 * 188.83081 * 26 17 16 46 46 H 1.09000 * 109.49715 * 292.70618 * 27 14 13 47 47 H 1.08999 * 109.49528 * 52.76427 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0604 0.0000 4 7 3.6089 0.6353 -0.0055 5 6 4.7389 1.4649 -0.0116 6 6 6.0106 0.9081 -0.0100 7 6 7.1221 1.7280 -0.0219 8 6 6.9691 3.1023 -0.0241 9 6 5.7038 3.6599 -0.0200 10 6 4.5885 2.8452 -0.0142 11 6 3.6144 -0.7169 -0.0027 12 6 2.3270 -1.1338 0.0036 13 6 1.8591 -2.5663 0.0080 14 7 1.3413 -2.9082 1.3395 15 6 0.9406 -4.3201 1.4019 16 6 0.2424 -4.5909 2.7389 17 7 1.1273 -4.1468 3.8265 18 6 1.4282 -4.9788 4.8717 19 1 1.4897 -6.0453 4.7127 20 6 1.6599 -4.4509 6.1344 21 7 1.2946 -3.2166 6.4090 22 14 2.4902 -5.4924 7.4442 23 1 3.9612 -5.3038 7.3675 24 1 2.0073 -5.0779 8.7859 25 1 2.1623 -6.9233 7.2204 26 6 1.6755 -2.7834 3.7648 27 6 2.3221 -2.5859 2.3845 28 1 -0.3633 0.0744 1.0250 29 1 -0.3632 0.8505 -0.5769 30 1 -0.3633 -0.9247 -0.4481 31 1 6.1308 -0.1652 -0.0035 32 1 8.1116 1.2954 -0.0251 33 1 7.8397 3.7415 -0.0292 34 1 5.5874 4.7336 -0.0221 35 1 3.6005 3.2813 -0.0115 36 1 4.4891 -1.3504 -0.0052 37 1 2.6947 -3.2222 -0.2363 38 1 1.0693 -2.6927 -0.7325 39 1 1.8241 -4.9529 1.3183 40 1 0.2562 -4.5409 0.5829 41 1 0.0455 -5.6582 2.8396 42 1 -0.6970 -4.0396 2.7829 43 1 1.4561 -2.8479 7.2915 44 1 0.8727 -2.0593 3.9035 45 1 2.4267 -2.6552 4.5443 46 1 3.1864 -3.2429 2.2873 47 1 2.6397 -1.5487 2.2778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:53 Heat of formation + Delta-G solvation = 141.928421 kcal Electronic energy + Delta-G solvation = -27489.649699 eV Core-core repulsion = 23867.981209 eV Total energy + Delta-G solvation = -3621.668491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66678 -39.23459 -37.89850 -34.76658 -33.83086 -31.79971 -31.30754 -30.73192 -29.96221 -29.82880 -27.58762 -26.83063 -24.63936 -23.04368 -22.67959 -22.46794 -21.85245 -20.61073 -19.30169 -18.97575 -18.09177 -16.70314 -16.31843 -15.64719 -15.15478 -14.98647 -14.91628 -14.46597 -14.34474 -14.03409 -13.88041 -13.70222 -13.40645 -13.34468 -13.12318 -12.96361 -12.74932 -12.44378 -12.23060 -12.00270 -11.87506 -11.59103 -11.38483 -11.33735 -11.04306 -10.74165 -10.48171 -10.42324 -10.26871 -10.05132 -10.02220 -9.74378 -9.53402 -9.30350 -8.96749 -8.46826 -8.00474 -7.69730 -6.55164 -5.74817 -3.20914 0.67644 1.05051 2.10395 2.32499 2.73211 3.38767 3.45521 3.46938 3.55113 4.27526 4.51116 4.55516 4.59338 4.70343 4.74460 4.86301 5.07147 5.10982 5.23631 5.30191 5.42386 5.43696 5.51480 5.55526 5.66397 5.76628 5.83565 5.90273 5.93763 5.98678 6.04046 6.10479 6.13353 6.19935 6.22083 6.24660 6.34279 6.39877 6.49716 6.61686 6.72186 6.77077 7.00348 7.12235 7.27111 7.65536 7.68169 7.72035 7.78340 7.86846 8.50356 9.25386 9.87925 10.50004 11.33452 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.003172 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.570877 B = 8826.049900 C =10103.575893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.112 3.888 3 N -0.297 5.297 4 N -0.328 5.328 5 C 0.173 3.827 6 C -0.146 4.146 7 C -0.092 4.092 8 C -0.138 4.138 9 C -0.095 4.095 10 C -0.124 4.124 11 C 0.053 3.947 12 C -0.203 4.203 13 C 0.130 3.870 14 N -0.525 5.525 15 C 0.045 3.955 16 C 0.149 3.851 17 N -0.594 5.594 18 C -0.256 4.256 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.184 3.816 27 C 0.040 3.960 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.172 0.828 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.075 0.925 46 H 0.020 0.980 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.654 9.963 -17.205 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.056 4.056 3 N -0.117 5.117 4 N -0.103 5.103 5 C 0.080 3.920 6 C -0.167 4.167 7 C -0.110 4.110 8 C -0.156 4.156 9 C -0.114 4.114 10 C -0.144 4.144 11 C -0.089 4.089 12 C -0.213 4.213 13 C 0.001 3.999 14 N -0.250 5.250 15 C -0.084 4.084 16 C 0.023 3.977 17 N -0.317 5.317 18 C -0.386 4.386 19 H 0.080 0.920 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.058 3.942 27 C -0.089 4.089 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.189 0.811 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.324 11.597 -16.938 21.795 hybrid contribution 1.352 -1.860 0.703 2.405 sum 8.676 9.737 -16.235 20.825 Atomic orbital electron populations 1.20178 0.85892 1.02843 1.03730 1.22416 0.97277 0.89708 0.96209 1.77366 0.85249 1.22663 1.26410 1.45584 1.04316 1.03941 1.56415 1.17580 0.83686 0.90070 1.00645 1.20842 0.90377 1.00695 1.04792 1.20960 0.98068 0.93467 0.98523 1.21195 0.97510 0.95114 1.01810 1.21065 0.91855 0.99947 0.98510 1.20918 1.00437 0.91004 1.02065 1.22338 0.99467 0.84294 1.02753 1.19965 0.91214 0.96677 1.13447 1.20354 0.97754 0.89187 0.92625 1.62025 1.40844 1.20304 1.01846 1.22613 0.98695 0.87311 0.99819 1.20973 0.92562 0.97533 0.86670 1.44076 1.52401 1.12666 1.22593 1.19135 1.42566 0.90077 0.86775 0.91965 1.25149 1.00519 0.96772 0.96872 1.70031 1.48143 1.15139 1.21015 0.86324 0.79435 0.79917 0.81277 1.21515 1.21717 1.20398 1.20825 0.96580 0.85971 0.90825 1.22903 0.92921 0.98577 0.94518 0.89638 0.91494 0.90006 0.85307 0.85122 0.85584 0.85220 0.84507 0.81075 0.95107 0.90410 0.95574 0.92002 0.92740 0.95686 0.93657 0.95539 0.90627 0.96181 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.29 36.01 0.37 -0.47 16 2 C 0.11 1.67 7.22 -82.37 -0.59 1.07 16 3 N -0.30 -4.69 11.87 33.69 0.40 -4.29 16 4 N -0.33 -4.77 3.80 -10.70 -0.04 -4.81 16 5 C 0.17 2.21 6.69 -83.59 -0.56 1.65 16 6 C -0.15 -1.53 9.46 -39.40 -0.37 -1.91 16 7 C -0.09 -0.79 10.04 -39.61 -0.40 -1.19 16 8 C -0.14 -1.13 10.04 -39.55 -0.40 -1.52 16 9 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 10 C -0.12 -1.45 9.66 -39.40 -0.38 -1.83 16 11 C 0.05 0.73 10.19 -17.10 -0.17 0.56 16 12 C -0.20 -2.94 3.93 -105.03 -0.41 -3.36 16 13 C 0.13 1.84 5.22 -4.98 -0.03 1.82 16 14 N -0.53 -9.22 4.72 -235.47 -1.11 -10.33 16 15 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 16 C 0.15 3.19 6.69 -3.60 -0.02 3.17 16 17 N -0.59 -15.26 3.00 -171.73 -0.52 -15.77 16 18 C -0.26 -7.14 9.58 -15.06 -0.14 -7.28 16 19 H 0.06 1.71 7.88 -52.48 -0.41 1.29 16 20 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 21 N -0.90 -26.69 11.46 55.49 0.64 -26.05 16 22 Si 0.90 21.93 29.58 -169.99 -5.03 16.90 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.18 4.57 5.41 -3.36 -0.02 4.55 16 27 C 0.04 0.80 5.37 -3.46 -0.02 0.79 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.92 7.57 -51.93 -0.39 0.53 16 31 H 0.13 1.16 6.74 -52.49 -0.35 0.81 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 1.64 7.70 -52.48 -0.40 1.24 16 36 H 0.17 1.88 7.04 -52.48 -0.37 1.51 16 37 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.08 0.98 7.80 -51.93 -0.40 0.58 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 41 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 42 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 2.08 6.48 -51.92 -0.34 1.75 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 1.17 6.24 -51.93 -0.32 0.84 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -32.47 379.08 -10.80 -43.26 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.20 Total: -0.28 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.65 Total: -4.35 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.63 Total: -61.26 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.47 -10.80 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.193 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds