Wall clock time and date at job start Tue Mar 31 2020 14:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30876 * 125.88395 * 2 1 4 4 N 1.40084 * 108.22028 * 180.23486 * 3 2 1 5 5 C 1.40182 * 126.05018 * 179.77667 * 4 3 2 6 6 C 1.38836 * 120.06508 * 179.68226 * 5 4 3 7 7 C 1.38125 * 119.93264 * 179.71972 * 6 5 4 8 8 C 1.38277 * 120.06666 * 0.54947 * 7 6 5 9 9 C 1.38278 * 120.13268 * 359.72630 * 8 7 6 10 10 C 1.38120 * 120.06757 * 359.97438 * 9 8 7 11 11 C 1.35222 * 107.89410 * 359.73317 * 4 3 2 12 12 C 1.35325 * 107.71378 * 0.02562 * 11 4 3 13 13 C 1.50698 * 126.03309 * 179.97438 * 12 11 4 14 14 N 1.46901 * 109.46832 * 106.39784 * 13 12 11 15 15 C 1.46895 * 110.99602 * 182.98487 * 14 13 12 16 16 C 1.53242 * 109.33943 * 187.25286 * 15 14 13 17 17 N 1.47075 * 108.52235 * 306.17442 * 16 15 14 18 18 C 1.36936 * 120.87936 * 231.18302 * 17 16 15 19 19 H 1.08003 * 120.00319 * 32.13144 * 18 17 16 20 20 C 1.38809 * 119.99867 * 211.85198 * 18 17 16 21 21 N 1.31619 * 120.00387 * 15.83280 * 20 18 17 22 22 Si 1.86806 * 120.00052 * 195.82578 * 20 18 17 23 23 H 1.48501 * 109.46727 * 90.00291 * 22 20 18 24 24 H 1.48498 * 109.47384 * 210.00076 * 22 20 18 25 25 H 1.48494 * 109.47332 * 330.00504 * 22 20 18 26 26 C 1.47078 * 118.23702 * 51.45678 * 17 16 15 27 27 C 1.46893 * 111.00132 * 307.28859 * 14 13 12 28 28 H 1.09000 * 109.46968 * 274.15142 * 1 2 3 29 29 H 1.09001 * 109.46603 * 34.14709 * 1 2 3 30 30 H 1.08992 * 109.46983 * 154.14476 * 1 2 3 31 31 H 1.08002 * 120.03701 * 359.97438 * 6 5 4 32 32 H 1.07996 * 119.96520 * 180.27490 * 7 6 5 33 33 H 1.08000 * 119.93650 * 179.74283 * 8 7 6 34 34 H 1.07997 * 119.96863 * 180.02562 * 9 8 7 35 35 H 1.08003 * 120.03396 * 180.02562 * 10 9 8 36 36 H 1.08003 * 126.14306 * 180.02562 * 11 4 3 37 37 H 1.08999 * 109.47214 * 346.39924 * 13 12 11 38 38 H 1.09000 * 109.46559 * 226.39691 * 13 12 11 39 39 H 1.08998 * 109.49300 * 67.29727 * 15 14 13 40 40 H 1.08999 * 109.52033 * 307.22587 * 15 14 13 41 41 H 1.08997 * 109.62944 * 186.45953 * 16 15 14 42 42 H 1.09009 * 109.78871 * 65.97786 * 16 15 14 43 43 H 0.96998 * 120.00448 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.63383 * 68.25317 * 26 17 16 45 45 H 1.09007 * 109.62837 * 188.83081 * 26 17 16 46 46 H 1.09000 * 109.49715 * 292.70618 * 27 14 13 47 47 H 1.08999 * 109.49528 * 52.76427 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0604 0.0000 4 7 3.6089 0.6353 -0.0055 5 6 4.7389 1.4649 -0.0116 6 6 6.0106 0.9081 -0.0100 7 6 7.1221 1.7280 -0.0219 8 6 6.9691 3.1023 -0.0241 9 6 5.7038 3.6599 -0.0200 10 6 4.5885 2.8452 -0.0142 11 6 3.6144 -0.7169 -0.0027 12 6 2.3270 -1.1338 0.0036 13 6 1.8591 -2.5663 0.0080 14 7 1.3413 -2.9082 1.3395 15 6 0.9406 -4.3201 1.4019 16 6 0.2424 -4.5909 2.7389 17 7 1.1273 -4.1468 3.8265 18 6 1.4282 -4.9788 4.8717 19 1 1.4897 -6.0453 4.7127 20 6 1.6599 -4.4509 6.1344 21 7 1.2946 -3.2166 6.4090 22 14 2.4902 -5.4924 7.4442 23 1 3.9612 -5.3038 7.3675 24 1 2.0073 -5.0779 8.7859 25 1 2.1623 -6.9233 7.2204 26 6 1.6755 -2.7834 3.7648 27 6 2.3221 -2.5859 2.3845 28 1 -0.3633 0.0744 1.0250 29 1 -0.3632 0.8505 -0.5769 30 1 -0.3633 -0.9247 -0.4481 31 1 6.1308 -0.1652 -0.0035 32 1 8.1116 1.2954 -0.0251 33 1 7.8397 3.7415 -0.0292 34 1 5.5874 4.7336 -0.0221 35 1 3.6005 3.2813 -0.0115 36 1 4.4891 -1.3504 -0.0052 37 1 2.6947 -3.2222 -0.2363 38 1 1.0693 -2.6927 -0.7325 39 1 1.8241 -4.9529 1.3183 40 1 0.2562 -4.5409 0.5829 41 1 0.0455 -5.6582 2.8396 42 1 -0.6970 -4.0396 2.7829 43 1 1.4561 -2.8479 7.2915 44 1 0.8727 -2.0593 3.9035 45 1 2.4267 -2.6552 4.5443 46 1 3.1864 -3.2429 2.2873 47 1 2.6397 -1.5487 2.2778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:52 Heat of formation + Delta-G solvation = 123.050279 kcal Electronic energy + Delta-G solvation = -27490.468317 eV Core-core repulsion = 23867.981209 eV Total energy + Delta-G solvation = -3622.487108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.69421 -40.06948 -39.42518 -36.36387 -34.98036 -33.47187 -32.25489 -31.72790 -31.53274 -31.19979 -28.81034 -28.15591 -26.19630 -24.33586 -24.17426 -23.60011 -23.05332 -21.61159 -20.81844 -20.22456 -19.06750 -18.59965 -17.12097 -17.08123 -16.55236 -16.07550 -15.93231 -15.90134 -15.70669 -15.32961 -15.20425 -14.95266 -14.86294 -14.63187 -14.44659 -14.23135 -13.90953 -13.57581 -13.33798 -13.15245 -13.04523 -12.97319 -12.82452 -12.62769 -12.57863 -12.26762 -12.11898 -12.04442 -11.86888 -11.66239 -11.47732 -11.37986 -10.97651 -10.59760 -10.04785 -10.01137 -9.17486 -8.91455 -8.60398 -7.87601 -5.37958 -0.17809 0.31297 1.16473 1.37844 1.45340 1.46153 1.55847 1.63327 2.49919 2.78482 3.16250 3.27965 3.41431 3.69678 3.71793 3.89990 3.92286 4.10488 4.17797 4.24837 4.34951 4.40433 4.41254 4.42902 4.50464 4.58249 4.64097 4.71617 4.73395 4.80085 4.89292 4.94656 4.95001 5.01271 5.03288 5.08570 5.14547 5.22085 5.34410 5.36730 5.37037 5.48858 5.62778 5.63956 5.69314 5.78725 6.19244 6.25597 6.36263 6.40045 6.63831 7.13533 7.83713 8.41222 9.18408 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.003172 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.570877 B = 8826.049900 C =10103.575893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.097 3.903 3 N -0.328 5.328 4 N -0.331 5.331 5 C 0.135 3.865 6 C -0.152 4.152 7 C -0.091 4.091 8 C -0.130 4.130 9 C -0.097 4.097 10 C -0.144 4.144 11 C 0.054 3.946 12 C -0.221 4.221 13 C 0.137 3.863 14 N -0.533 5.533 15 C 0.057 3.943 16 C 0.143 3.857 17 N -0.612 5.612 18 C -0.266 4.266 19 H 0.067 0.933 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.265 1.265 26 C 0.195 3.805 27 C 0.066 3.934 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.121 0.879 36 H 0.197 0.803 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.026 0.974 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.249 0.751 44 H -0.008 1.008 45 H 0.039 0.961 46 H 0.018 0.982 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.642 9.267 -18.971 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.070 4.070 3 N -0.149 5.149 4 N -0.105 5.105 5 C 0.043 3.957 6 C -0.173 4.173 7 C -0.109 4.109 8 C -0.148 4.148 9 C -0.115 4.115 10 C -0.164 4.164 11 C -0.089 4.089 12 C -0.232 4.232 13 C 0.010 3.990 14 N -0.258 5.258 15 C -0.072 4.072 16 C 0.018 3.982 17 N -0.336 5.336 18 C -0.396 4.396 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.069 3.931 27 C -0.064 4.064 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.139 0.861 36 H 0.213 0.787 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.044 0.956 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.010 0.990 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.310 10.899 -18.748 23.600 hybrid contribution 0.787 -1.545 1.204 2.111 sum 10.097 9.354 -17.544 22.299 Atomic orbital electron populations 1.20202 0.84759 1.04180 1.03086 1.22801 0.98220 0.89848 0.96111 1.77302 0.86276 1.23693 1.27612 1.45777 1.04326 1.04506 1.55936 1.18001 0.84035 0.90521 1.03112 1.21114 0.89971 1.01702 1.04505 1.21387 0.98758 0.93672 0.97113 1.21637 0.98070 0.95511 0.99626 1.21382 0.91560 1.00961 0.97624 1.21002 1.00793 0.91226 1.03374 1.22781 1.00201 0.84365 1.01522 1.20067 0.91524 0.96740 1.14855 1.20375 0.98979 0.89068 0.90615 1.61934 1.40405 1.20429 1.03016 1.22464 0.99067 0.87188 0.98479 1.21159 0.91958 0.97637 0.87453 1.44356 1.53540 1.12493 1.23248 1.19498 1.41906 0.90641 0.87558 0.91551 1.25952 1.01471 0.97964 0.99088 1.70202 1.49740 1.16979 1.21200 0.85262 0.78153 0.78883 0.78123 1.21213 1.22161 1.18950 1.20523 0.94622 0.85226 0.92779 1.22417 0.92714 0.98502 0.92730 0.91145 0.90245 0.88592 0.84189 0.82149 0.82361 0.82946 0.86083 0.78668 0.93701 0.88091 0.95595 0.88057 0.92101 0.96731 0.94206 0.98955 0.94228 0.96397 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.29 71.24 0.73 -0.84 16 2 C 0.10 2.91 7.22 43.11 0.31 3.22 16 3 N -0.33 -10.64 11.87 -47.33 -0.56 -11.21 16 4 N -0.33 -9.70 3.80 -187.76 -0.71 -10.41 16 5 C 0.14 3.45 6.69 38.09 0.25 3.70 16 6 C -0.15 -2.97 9.46 22.39 0.21 -2.76 16 7 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 8 C -0.13 -1.74 10.04 22.29 0.22 -1.52 16 9 C -0.10 -1.62 10.04 22.25 0.22 -1.39 16 10 C -0.14 -3.40 9.66 22.39 0.22 -3.18 16 11 C 0.05 1.44 10.19 83.50 0.85 2.29 16 12 C -0.22 -6.20 3.93 -20.13 -0.08 -6.28 16 13 C 0.14 3.56 5.22 85.56 0.45 4.01 16 14 N -0.53 -17.92 4.72 -898.90 -4.24 -22.17 16 15 C 0.06 1.87 5.62 86.39 0.49 2.36 16 16 C 0.14 6.05 6.69 86.35 0.58 6.62 16 17 N -0.61 -31.95 3.00 -697.23 -2.09 -34.04 16 18 C -0.27 -14.99 9.58 84.03 0.81 -14.18 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 21 N -0.94 -57.53 11.46 21.65 0.25 -57.28 16 22 Si 0.97 45.68 29.58 68.60 2.03 47.71 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.19 10.03 5.41 86.50 0.47 10.50 16 27 C 0.07 2.66 5.37 86.54 0.46 3.12 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.10 2.04 7.57 -2.39 -0.02 2.02 16 31 H 0.14 2.28 6.74 -2.91 -0.02 2.26 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.12 3.12 7.70 -2.91 -0.02 3.10 16 36 H 0.20 3.95 7.04 -2.91 -0.02 3.93 16 37 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 38 H 0.10 2.19 7.80 -2.39 -0.02 2.17 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 41 H 0.06 2.44 7.95 -2.39 -0.02 2.43 16 42 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.04 2.29 6.48 -2.38 -0.02 2.27 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 2.35 6.24 -2.39 -0.01 2.34 16 Total: -1.00 -73.40 379.08 2.45 -70.95 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.95 Total: 14.27 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 6.83 Total: 2.18 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -7.37 Total: -135.11 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.40 2.45 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.004 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds