Wall clock time and date at job start Tue Mar 31 2020 14:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38367 * 119.93173 * 2 1 4 4 C 1.38321 * 120.27889 * 180.02562 * 3 2 1 5 5 C 1.38000 * 120.13609 * 359.73866 * 4 3 2 6 6 C 1.39482 * 119.86220 * 0.49093 * 5 4 3 7 7 C 1.47976 * 120.13876 * 179.79046 * 6 5 4 8 8 N 1.36290 * 126.33878 * 132.06984 * 7 6 5 9 9 H 0.96991 * 126.13825 * 359.97438 * 8 7 6 10 10 N 1.40080 * 107.71781 * 179.73101 * 8 7 6 11 11 C 1.30894 * 108.50713 * 0.41918 * 10 8 7 12 12 C 1.36624 * 126.33460 * 312.04421 * 7 6 5 13 13 C 1.50699 * 126.07785 * 0.04322 * 12 7 6 14 14 N 1.46907 * 109.46935 * 286.48923 * 13 12 7 15 15 C 1.46900 * 111.00477 * 288.32073 * 14 13 12 16 16 C 1.53232 * 109.33809 * 172.74535 * 15 14 13 17 17 N 1.47077 * 108.52420 * 53.83171 * 16 15 14 18 18 C 1.36944 * 120.88007 * 128.78895 * 17 16 15 19 19 H 1.08000 * 119.99455 * 208.69110 * 18 17 16 20 20 C 1.38808 * 119.99808 * 28.69084 * 18 17 16 21 21 N 1.31617 * 120.00605 * 13.28308 * 20 18 17 22 22 Si 1.86802 * 119.99830 * 193.28165 * 20 18 17 23 23 H 1.48491 * 109.47199 * 59.99724 * 22 20 18 24 24 H 1.48493 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47004 * 300.00155 * 22 20 18 26 26 C 1.47077 * 118.23752 * 308.81490 * 17 16 15 27 27 C 1.46900 * 110.99759 * 164.01637 * 14 13 12 28 28 C 1.37961 * 119.92845 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47014 * 270.02230 * 1 2 3 30 30 H 1.09003 * 109.47178 * 30.01979 * 1 2 3 31 31 H 1.08996 * 109.47403 * 150.02554 * 1 2 3 32 32 H 1.07998 * 119.85777 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.93046 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.06495 * 180.28053 * 5 4 3 35 35 H 1.08001 * 125.69851 * 179.84892 * 11 10 8 36 36 H 1.08997 * 109.47315 * 46.49329 * 13 12 7 37 37 H 1.09004 * 109.47084 * 166.49730 * 13 12 7 38 38 H 1.08996 * 109.49251 * 292.71008 * 15 14 13 39 39 H 1.09000 * 109.49009 * 52.78304 * 15 14 13 40 40 H 1.09002 * 109.63337 * 294.11814 * 16 15 14 41 41 H 1.09004 * 109.78448 * 173.63691 * 16 15 14 42 42 H 0.96999 * 120.00413 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.62957 * 291.47137 * 26 17 16 44 44 H 1.09002 * 109.78658 * 170.98869 * 26 17 16 45 45 H 1.09000 * 109.49825 * 307.21939 * 27 14 13 46 46 H 1.09007 * 109.49163 * 67.27097 * 27 14 13 47 47 H 1.07997 * 120.07249 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5806 1.2075 -0.0005 5 6 4.2806 0.0183 0.0044 6 6 3.5906 -1.1939 -0.0005 7 6 4.3351 -2.4727 0.0001 8 7 4.1026 -3.5422 0.8122 9 1 3.4177 -3.6028 1.4963 10 7 5.0268 -4.5404 0.4777 11 6 5.7906 -4.0931 -0.4866 12 6 5.3825 -2.7999 -0.8139 13 6 5.9895 -1.9201 -1.8761 14 7 5.0802 -1.8442 -3.0275 15 6 5.0573 -3.1144 -3.7650 16 6 3.9694 -3.0560 -4.8425 17 7 4.1945 -1.8607 -5.6695 18 6 4.2445 -1.9501 -7.0351 19 1 4.8358 -1.2454 -7.6010 20 6 3.5351 -2.9462 -7.6918 21 7 2.6177 -3.6353 -7.0469 22 14 3.8825 -3.3088 -9.4911 23 1 5.3019 -3.7155 -9.6490 24 1 2.9977 -4.4077 -9.9543 25 1 3.6237 -2.0909 -10.3004 26 6 4.3651 -0.5671 -4.9908 27 6 5.4374 -0.7234 -3.9074 28 6 2.1953 -1.1956 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6540 2.1324 0.0004 33 1 4.1138 2.1467 -0.0001 34 1 5.3606 0.0262 0.0085 35 1 6.5987 -4.6363 -0.9538 36 1 6.1489 -0.9203 -1.4724 37 1 6.9439 -2.3400 -2.1941 38 1 6.0267 -3.2794 -4.2353 39 1 4.8433 -3.9313 -3.0758 40 1 2.9890 -2.9951 -4.3702 41 1 4.0202 -3.9481 -5.4669 42 1 2.1218 -4.3311 -7.5060 43 1 3.4227 -0.2669 -4.5327 44 1 4.6793 0.1887 -5.7108 45 1 5.4990 0.1937 -3.3216 46 1 6.4018 -0.9215 -4.3754 47 1 1.6553 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:54 Heat of formation + Delta-G solvation = 128.637270 kcal Electronic energy + Delta-G solvation = -28170.787441 eV Core-core repulsion = 24548.542603 eV Total energy + Delta-G solvation = -3622.244838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19619 -39.04384 -37.85470 -34.51045 -33.26134 -32.13960 -31.81810 -30.58600 -29.79500 -29.23402 -26.95345 -26.74398 -24.49686 -23.18408 -22.42423 -22.17932 -21.52550 -21.39353 -19.15539 -18.93621 -17.54223 -16.68904 -16.31459 -15.45497 -15.10592 -15.02061 -14.52698 -14.34396 -14.09728 -13.96513 -13.78651 -13.73443 -13.38845 -13.25459 -13.06538 -12.90151 -12.69461 -12.39336 -12.28677 -11.92505 -11.65048 -11.37210 -11.17249 -11.08293 -10.94419 -10.69375 -10.65913 -10.35070 -10.19359 -9.95239 -9.70107 -9.64585 -9.52873 -8.95503 -8.72558 -8.44170 -8.07779 -7.63259 -6.54627 -5.70768 -3.14922 1.00761 1.37468 2.07367 2.83758 2.87176 3.41710 3.47081 3.48123 3.74745 4.52192 4.54166 4.67082 4.77527 4.80219 4.88140 5.05639 5.25839 5.32541 5.43855 5.44486 5.49281 5.52461 5.55685 5.58765 5.72332 5.78846 5.87239 5.90995 6.01945 6.05596 6.09060 6.24021 6.27360 6.37630 6.41161 6.46139 6.49840 6.54311 6.64778 6.68807 6.83643 6.93044 7.03690 7.28253 7.36738 7.70155 7.76415 7.78423 7.82986 7.93786 8.52519 9.29318 9.92185 10.52062 11.37549 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.003901 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.377968 B = 7175.161120 C = 8113.066538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 C -0.114 4.114 4 C -0.113 4.113 5 C -0.092 4.092 6 C -0.011 4.011 7 C 0.143 3.857 8 N -0.477 5.477 9 H 0.435 0.565 10 N -0.292 5.292 11 C 0.056 3.944 12 C -0.198 4.198 13 C 0.127 3.873 14 N -0.523 5.523 15 C 0.040 3.960 16 C 0.181 3.819 17 N -0.594 5.594 18 C -0.250 4.250 19 H 0.063 0.937 20 C 0.002 3.998 21 N -0.905 5.905 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.151 3.849 27 C 0.047 3.953 28 C -0.100 4.100 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.181 0.819 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.022 0.978 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.023 0.977 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 7.105 18.462 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.132 4.132 4 C -0.132 4.132 5 C -0.111 4.111 6 C -0.013 4.013 7 C 0.015 3.985 8 N -0.186 5.186 9 H 0.279 0.721 10 N -0.114 5.114 11 C -0.130 4.130 12 C -0.210 4.210 13 C -0.002 4.002 14 N -0.247 5.247 15 C -0.089 4.089 16 C 0.055 3.945 17 N -0.318 5.318 18 C -0.380 4.380 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.024 3.976 27 C -0.083 4.083 28 C -0.119 4.119 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.198 0.802 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.043 0.957 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.119 6.031 19.295 20.247 hybrid contribution 0.744 0.101 -1.563 1.734 sum 1.863 6.133 17.732 18.855 Atomic orbital electron populations 1.20799 0.91109 1.03247 1.02004 1.19769 0.96093 0.92844 0.99563 1.21082 0.94302 0.97406 1.00414 1.21000 0.94169 0.97763 1.00217 1.21051 0.99752 0.91126 0.99139 1.17839 0.92147 0.89823 1.01496 1.19289 0.96547 0.88833 0.93827 1.46519 1.29729 1.10752 1.31590 0.72089 1.77264 1.03869 1.11504 1.18776 1.23674 0.99332 0.94434 0.95533 1.19936 1.01157 0.97011 1.02894 1.20380 0.92902 0.97212 0.89703 1.61954 1.49758 1.04734 1.08301 1.22837 0.99882 0.90000 0.96208 1.20815 0.92735 0.91570 0.89342 1.44072 1.84407 1.01087 1.02204 1.19146 1.22369 1.14505 0.81986 0.91892 1.25074 0.96076 1.00804 0.97652 1.69990 1.23770 1.25257 1.35985 0.86369 0.77542 0.77654 0.85166 1.21114 1.21656 1.20945 1.20937 0.94990 0.89409 0.92231 1.22591 0.98236 0.92696 0.94772 1.21017 0.92765 0.97866 1.00214 0.91402 0.91361 0.91321 0.86128 0.85812 0.85854 0.80238 0.91050 0.94637 0.96000 0.92330 0.95989 0.89587 0.93656 0.95918 0.92928 0.92308 0.95677 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.08 -0.94 5.87 -104.68 -0.61 -1.55 16 3 C -0.11 -1.20 9.69 -39.50 -0.38 -1.58 16 4 C -0.11 -1.19 10.03 -39.64 -0.40 -1.59 16 5 C -0.09 -1.07 8.84 -39.21 -0.35 -1.41 16 6 C -0.01 -0.14 5.66 -104.96 -0.59 -0.74 16 7 C 0.14 1.96 6.64 -82.48 -0.55 1.41 16 8 N -0.48 -6.07 7.43 33.28 0.25 -5.83 16 9 H 0.44 4.27 8.96 -182.62 -1.64 2.63 16 10 N -0.29 -4.22 12.68 30.56 0.39 -3.83 16 11 C 0.06 0.78 11.55 -17.48 -0.20 0.58 16 12 C -0.20 -2.86 4.77 -104.74 -0.50 -3.36 16 13 C 0.13 1.86 4.98 -4.97 -0.02 1.83 16 14 N -0.52 -9.40 4.57 -235.76 -1.08 -10.48 16 15 C 0.04 0.81 5.46 -3.70 -0.02 0.79 16 16 C 0.18 4.55 5.39 -3.61 -0.02 4.53 16 17 N -0.59 -15.41 3.03 -172.02 -0.52 -15.93 16 18 C -0.25 -7.02 9.63 -15.06 -0.15 -7.16 16 19 H 0.06 1.73 7.86 -52.49 -0.41 1.31 16 20 C 0.00 0.06 5.01 -17.43 -0.09 -0.02 16 21 N -0.91 -26.85 11.07 55.49 0.61 -26.23 16 22 Si 0.90 22.03 29.57 -169.99 -5.03 17.01 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.15 3.30 6.69 -3.60 -0.02 3.27 16 27 C 0.05 0.84 5.60 -3.70 -0.02 0.82 16 28 C -0.10 -1.24 9.43 -39.20 -0.37 -1.61 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.12 1.31 6.67 -52.49 -0.35 0.96 16 35 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.07 0.94 5.76 -51.93 -0.30 0.64 16 37 H 0.04 0.50 8.05 -51.93 -0.42 0.09 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.15 7.01 -51.93 -0.36 0.79 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 1.10 7.96 -51.93 -0.41 0.69 16 45 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -32.40 378.71 -12.01 -44.41 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.40 Total: 1.65 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -3.94 Total: -6.47 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.35 Total: -62.30 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.40 -12.01 -44.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.045 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds