Wall clock time and date at job start Tue Mar 31 2020 14:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38367 * 119.93173 * 2 1 4 4 C 1.38321 * 120.27889 * 180.02562 * 3 2 1 5 5 C 1.38000 * 120.13609 * 359.73866 * 4 3 2 6 6 C 1.39482 * 119.86220 * 0.49093 * 5 4 3 7 7 C 1.47976 * 120.13876 * 179.79046 * 6 5 4 8 8 N 1.36290 * 126.33878 * 132.06984 * 7 6 5 9 9 H 0.96991 * 126.13825 * 359.97438 * 8 7 6 10 10 N 1.40080 * 107.71781 * 179.73101 * 8 7 6 11 11 C 1.30894 * 108.50713 * 0.41918 * 10 8 7 12 12 C 1.36624 * 126.33460 * 312.04421 * 7 6 5 13 13 C 1.50699 * 126.07785 * 0.04322 * 12 7 6 14 14 N 1.46907 * 109.46935 * 286.48923 * 13 12 7 15 15 C 1.46900 * 111.00477 * 288.32073 * 14 13 12 16 16 C 1.53232 * 109.33809 * 172.74535 * 15 14 13 17 17 N 1.47077 * 108.52420 * 53.83171 * 16 15 14 18 18 C 1.36944 * 120.88007 * 128.78895 * 17 16 15 19 19 H 1.08000 * 119.99455 * 208.69110 * 18 17 16 20 20 C 1.38808 * 119.99808 * 28.69084 * 18 17 16 21 21 N 1.31617 * 120.00605 * 13.28308 * 20 18 17 22 22 Si 1.86802 * 119.99830 * 193.28165 * 20 18 17 23 23 H 1.48491 * 109.47199 * 59.99724 * 22 20 18 24 24 H 1.48493 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47004 * 300.00155 * 22 20 18 26 26 C 1.47077 * 118.23752 * 308.81490 * 17 16 15 27 27 C 1.46900 * 110.99759 * 164.01637 * 14 13 12 28 28 C 1.37961 * 119.92845 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47014 * 270.02230 * 1 2 3 30 30 H 1.09003 * 109.47178 * 30.01979 * 1 2 3 31 31 H 1.08996 * 109.47403 * 150.02554 * 1 2 3 32 32 H 1.07998 * 119.85777 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.93046 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.06495 * 180.28053 * 5 4 3 35 35 H 1.08001 * 125.69851 * 179.84892 * 11 10 8 36 36 H 1.08997 * 109.47315 * 46.49329 * 13 12 7 37 37 H 1.09004 * 109.47084 * 166.49730 * 13 12 7 38 38 H 1.08996 * 109.49251 * 292.71008 * 15 14 13 39 39 H 1.09000 * 109.49009 * 52.78304 * 15 14 13 40 40 H 1.09002 * 109.63337 * 294.11814 * 16 15 14 41 41 H 1.09004 * 109.78448 * 173.63691 * 16 15 14 42 42 H 0.96999 * 120.00413 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.62957 * 291.47137 * 26 17 16 44 44 H 1.09002 * 109.78658 * 170.98869 * 26 17 16 45 45 H 1.09000 * 109.49825 * 307.21939 * 27 14 13 46 46 H 1.09007 * 109.49163 * 67.27097 * 27 14 13 47 47 H 1.07997 * 120.07249 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5806 1.2075 -0.0005 5 6 4.2806 0.0183 0.0044 6 6 3.5906 -1.1939 -0.0005 7 6 4.3351 -2.4727 0.0001 8 7 4.1026 -3.5422 0.8122 9 1 3.4177 -3.6028 1.4963 10 7 5.0268 -4.5404 0.4777 11 6 5.7906 -4.0931 -0.4866 12 6 5.3825 -2.7999 -0.8139 13 6 5.9895 -1.9201 -1.8761 14 7 5.0802 -1.8442 -3.0275 15 6 5.0573 -3.1144 -3.7650 16 6 3.9694 -3.0560 -4.8425 17 7 4.1945 -1.8607 -5.6695 18 6 4.2445 -1.9501 -7.0351 19 1 4.8358 -1.2454 -7.6010 20 6 3.5351 -2.9462 -7.6918 21 7 2.6177 -3.6353 -7.0469 22 14 3.8825 -3.3088 -9.4911 23 1 5.3019 -3.7155 -9.6490 24 1 2.9977 -4.4077 -9.9543 25 1 3.6237 -2.0909 -10.3004 26 6 4.3651 -0.5671 -4.9908 27 6 5.4374 -0.7234 -3.9074 28 6 2.1953 -1.1956 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6540 2.1324 0.0004 33 1 4.1138 2.1467 -0.0001 34 1 5.3606 0.0262 0.0085 35 1 6.5987 -4.6363 -0.9538 36 1 6.1489 -0.9203 -1.4724 37 1 6.9439 -2.3400 -2.1941 38 1 6.0267 -3.2794 -4.2353 39 1 4.8433 -3.9313 -3.0758 40 1 2.9890 -2.9951 -4.3702 41 1 4.0202 -3.9481 -5.4669 42 1 2.1218 -4.3311 -7.5060 43 1 3.4227 -0.2669 -4.5327 44 1 4.6793 0.1887 -5.7108 45 1 5.4990 0.1937 -3.3216 46 1 6.4018 -0.9215 -4.3754 47 1 1.6553 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:53 Heat of formation + Delta-G solvation = 109.206960 kcal Electronic energy + Delta-G solvation = -28171.630003 eV Core-core repulsion = 24548.542603 eV Total energy + Delta-G solvation = -3623.087400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23164 -39.89529 -39.47804 -36.26007 -34.19366 -33.56433 -32.95787 -31.99391 -31.56321 -30.34822 -28.40868 -27.69973 -26.06832 -24.44418 -24.13620 -23.56412 -22.49615 -22.37844 -20.75143 -20.16384 -18.66554 -18.53634 -17.18756 -16.98082 -16.36876 -16.19589 -15.94815 -15.71932 -15.35705 -15.28165 -15.21528 -14.86701 -14.69263 -14.61418 -14.56187 -14.10929 -13.82213 -13.58681 -13.17742 -13.05359 -13.02168 -12.82101 -12.81269 -12.57869 -12.36994 -12.08274 -12.00020 -11.92669 -11.87413 -11.65991 -11.51740 -11.30416 -10.66838 -10.56941 -9.91296 -9.58762 -9.15055 -9.04624 -8.60405 -7.84497 -5.32801 0.09250 0.52455 1.07779 1.46877 1.49411 1.56222 1.76124 1.91372 2.52028 2.88222 3.23082 3.32782 3.59879 3.73617 3.79268 3.96711 4.06322 4.23595 4.29693 4.35494 4.41868 4.43429 4.48632 4.55097 4.58729 4.68217 4.74709 4.76981 4.82318 4.83901 4.91236 4.95980 4.99332 5.03330 5.11209 5.23371 5.25663 5.31972 5.41456 5.53614 5.60203 5.62519 5.65773 5.71243 5.71695 6.11034 6.29885 6.33496 6.40634 6.43188 6.68795 7.15987 7.86731 8.42157 9.21652 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.003901 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.377968 B = 7175.161120 C = 8113.066538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.099 4.099 6 C -0.028 4.028 7 C 0.147 3.853 8 N -0.472 5.472 9 H 0.445 0.555 10 N -0.314 5.314 11 C 0.052 3.948 12 C -0.219 4.219 13 C 0.134 3.866 14 N -0.530 5.530 15 C 0.061 3.939 16 C 0.193 3.807 17 N -0.612 5.612 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.147 3.853 27 C 0.058 3.942 28 C -0.119 4.119 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.199 0.801 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.020 0.980 39 H 0.064 0.936 40 H -0.014 1.014 41 H 0.052 0.948 42 H 0.249 0.751 43 H 0.009 0.991 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.025 0.975 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 9.010 19.112 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.030 4.030 7 C 0.017 3.983 8 N -0.182 5.182 9 H 0.291 0.709 10 N -0.136 5.136 11 C -0.134 4.134 12 C -0.230 4.230 13 C 0.006 3.994 14 N -0.255 5.255 15 C -0.068 4.068 16 C 0.067 3.933 17 N -0.336 5.336 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.022 3.978 27 C -0.071 4.071 28 C -0.138 4.138 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.215 0.785 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.082 0.918 40 H 0.004 0.996 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.027 0.973 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.043 0.957 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.411 7.958 19.979 21.641 hybrid contribution 0.268 -0.404 -1.690 1.758 sum 2.679 7.554 18.290 19.969 Atomic orbital electron populations 1.20829 0.89947 1.03169 1.03121 1.20065 0.97184 0.92866 0.99260 1.21433 0.94751 0.97960 0.99471 1.21353 0.94302 0.98468 0.98940 1.21252 1.00429 0.91008 0.99113 1.17951 0.92303 0.89976 1.02783 1.19525 0.96167 0.89210 0.93353 1.46556 1.29647 1.10327 1.31652 0.70898 1.77224 1.04577 1.12328 1.19509 1.24025 0.99603 0.94478 0.95295 1.20004 1.02095 0.97421 1.03499 1.20394 0.92330 0.98659 0.88057 1.61865 1.51605 1.03304 1.08677 1.22411 0.97607 0.91797 0.94997 1.20505 0.92734 0.90304 0.89791 1.44338 1.84500 1.02720 1.02022 1.19523 1.22009 1.14484 0.83274 0.91393 1.25868 0.96046 1.00879 1.01859 1.70177 1.24965 1.25820 1.37583 0.85308 0.77368 0.77375 0.80189 1.20307 1.22134 1.19959 1.21091 0.95696 0.87751 0.93297 1.22433 0.96336 0.94197 0.94095 1.21123 0.92999 0.98337 1.01334 0.89670 0.90479 0.92320 0.83867 0.83112 0.84731 0.78459 0.88928 0.93646 0.96199 0.91793 0.99564 0.92986 0.94223 0.97334 0.92218 0.88761 0.95668 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.01 71.24 0.71 -1.26 16 2 C -0.09 -2.02 5.87 -19.90 -0.12 -2.13 16 3 C -0.12 -2.21 9.69 22.32 0.22 -1.99 16 4 C -0.11 -2.03 10.03 22.23 0.22 -1.81 16 5 C -0.10 -2.08 8.84 22.51 0.20 -1.88 16 6 C -0.03 -0.70 5.66 -20.09 -0.11 -0.81 16 7 C 0.15 3.88 6.64 40.66 0.27 4.15 16 8 N -0.47 -11.82 7.43 -48.61 -0.36 -12.18 16 9 H 0.45 8.68 8.96 -213.34 -1.91 6.77 16 10 N -0.31 -8.90 12.68 -57.24 -0.73 -9.62 16 11 C 0.05 1.38 11.55 85.14 0.98 2.36 16 12 C -0.22 -5.99 4.77 -19.94 -0.10 -6.09 16 13 C 0.13 3.58 4.98 85.56 0.43 4.00 16 14 N -0.53 -18.23 4.57 -899.81 -4.12 -22.35 16 15 C 0.06 2.50 5.46 86.38 0.47 2.97 16 16 C 0.19 9.98 5.39 86.35 0.47 10.45 16 17 N -0.61 -32.09 3.03 -698.14 -2.12 -34.21 16 18 C -0.26 -14.84 9.63 84.03 0.81 -14.03 16 19 H 0.07 3.69 7.86 -2.91 -0.02 3.67 16 20 C -0.05 -2.95 5.01 84.86 0.43 -2.53 16 21 N -0.94 -57.48 11.07 21.65 0.24 -57.24 16 22 Si 0.97 45.72 29.57 68.60 2.03 47.75 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 C 0.15 6.32 6.69 86.35 0.58 6.90 16 27 C 0.06 1.98 5.60 86.38 0.48 2.47 16 28 C -0.12 -2.93 9.43 22.51 0.21 -2.72 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 31 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 32 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.13 2.43 6.67 -2.91 -0.02 2.41 16 35 H 0.20 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.09 2.10 5.76 -2.39 -0.01 2.08 16 37 H 0.05 1.15 8.05 -2.38 -0.02 1.14 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 2.52 7.01 -2.39 -0.02 2.50 16 40 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.05 3.02 6.15 -2.39 -0.01 3.00 16 42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 44 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 45 H 0.09 2.57 7.93 -2.39 -0.02 2.55 16 46 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.11 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.96 378.71 0.16 -70.80 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.94 Total: 18.99 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.15 Total: -1.93 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -7.08 Total: -135.61 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.96 0.16 -70.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.009 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds