Wall clock time and date at job start Tue Mar 31 2020 14:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38137 * 120.03546 * 2 1 4 4 C 1.38259 * 120.06636 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.93274 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47373 * 89.99717 * 5 4 3 7 7 C 1.46905 * 111.00024 * 190.00201 * 6 5 4 8 8 C 1.50690 * 109.47233 * 71.54907 * 7 6 5 9 9 H 1.08001 * 120.00373 * 355.22878 * 8 7 6 10 10 C 1.37882 * 120.00135 * 175.22797 * 8 7 6 11 11 N 1.31519 * 119.99680 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00131 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47035 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46952 * 119.99819 * 12 10 8 15 15 H 1.48495 * 109.47198 * 239.99800 * 12 10 8 16 16 C 1.46899 * 110.99746 * 66.04900 * 6 5 4 17 17 C 1.53006 * 109.46829 * 190.53179 * 16 6 5 18 18 C 1.53005 * 117.49613 * 243.31558 * 17 16 6 19 19 C 1.52998 * 117.49713 * 174.65710 * 17 16 6 20 20 C 1.38301 * 120.13336 * 0.29240 * 4 3 2 21 21 C 1.38095 * 120.06479 * 359.45444 * 20 4 3 22 22 C 1.38821 * 120.03351 * 179.97438 * 2 1 3 23 23 N 1.40198 * 120.06499 * 359.97438 * 22 2 1 24 24 C 1.34726 * 126.84191 * 227.18533 * 23 22 2 25 25 N 1.30853 * 108.03352 * 179.97438 * 24 23 22 26 26 C 1.33258 * 109.84277 * 0.02562 * 25 24 23 27 27 N 1.30750 * 108.99982 * 359.70546 * 26 25 24 28 28 H 1.09000 * 109.46599 * 95.32367 * 1 2 3 29 29 H 1.09002 * 109.47485 * 215.31802 * 1 2 3 30 30 H 1.08998 * 109.47040 * 335.32392 * 1 2 3 31 31 H 1.07998 * 119.96547 * 359.97235 * 3 2 1 32 32 H 1.09001 * 109.46840 * 329.99625 * 5 4 3 33 33 H 1.09004 * 109.47004 * 210.00170 * 5 4 3 34 34 H 1.08997 * 109.46952 * 191.55300 * 7 6 5 35 35 H 1.09005 * 109.46563 * 311.54717 * 7 6 5 36 36 H 0.97000 * 119.99536 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.47100 * 310.52238 * 16 6 5 38 38 H 1.08997 * 109.47492 * 70.53460 * 16 6 5 39 39 H 1.08996 * 115.55158 * 28.98452 * 17 16 6 40 40 H 1.09005 * 117.50139 * 359.97438 * 18 17 16 41 41 H 1.09002 * 117.49835 * 145.02431 * 18 17 16 42 42 H 1.09004 * 117.49679 * 214.97487 * 19 17 16 43 43 H 1.09000 * 117.50316 * 359.97438 * 19 17 16 44 44 H 1.08002 * 119.96533 * 179.70506 * 20 4 3 45 45 H 1.08009 * 120.03267 * 180.29486 * 21 20 4 46 46 H 1.08003 * 125.98641 * 359.97438 * 24 23 22 47 47 H 1.07998 * 125.50216 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.3322 2.5030 0.0011 6 7 4.5758 2.9272 1.3862 7 6 5.0915 4.3020 1.4328 8 6 3.9881 5.2648 1.0776 9 1 3.0241 4.8904 0.7663 10 6 4.2091 6.6239 1.1502 11 7 5.3832 7.0798 1.5289 12 14 2.8410 7.8174 0.7106 13 1 1.6272 7.0567 0.3195 14 1 2.5322 8.6710 1.8859 15 1 3.2758 8.6733 -0.4223 16 6 5.4878 1.9994 2.0683 17 6 5.5122 2.3163 3.5650 18 6 6.8398 2.7812 4.1671 19 6 6.3100 1.3780 4.4728 20 6 4.2759 0.0009 -0.0050 21 6 3.5903 -1.1978 0.0002 22 6 2.2018 -1.2018 0.0005 23 7 1.5029 -2.4172 0.0016 24 6 1.7357 -3.4822 0.7932 25 7 0.8692 -4.4131 0.4850 26 6 0.0720 -3.9833 -0.4924 27 7 0.4167 -2.7648 -0.8181 28 1 -0.3632 -0.0954 -1.0233 29 1 -0.3634 -0.8385 0.5941 30 1 -0.3633 0.9338 0.4290 31 1 1.6584 2.1312 -0.0005 32 1 3.7420 3.2617 -0.5128 33 1 5.2851 2.3744 -0.5124 34 1 5.4547 4.5199 2.4371 35 1 5.9094 4.4075 0.7199 36 1 5.5385 8.0359 1.5802 37 1 5.1434 0.9760 1.9193 38 1 6.4915 2.1086 1.6574 39 1 4.5973 2.7497 3.9688 40 1 7.6958 2.8610 3.4970 41 1 6.7981 3.5202 4.9673 42 1 5.9200 1.1945 5.4740 43 1 6.8171 0.5347 4.0039 44 1 5.3559 0.0047 -0.0094 45 1 4.1336 -2.1313 0.0007 46 1 2.5031 -3.5551 1.5496 47 1 -0.7326 -4.5481 -0.9396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:14 Heat of formation + Delta-G solvation = 149.052741 kcal Electronic energy + Delta-G solvation = -27193.162644 eV Core-core repulsion = 23571.803087 eV Total energy + Delta-G solvation = -3621.359557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.43014 -39.71730 -37.79101 -35.77427 -34.07699 -32.87769 -32.45260 -31.42600 -30.25538 -27.77627 -27.03347 -26.53720 -24.31648 -23.00751 -22.54502 -22.01723 -21.54420 -21.32106 -20.19038 -19.55666 -18.25713 -16.55225 -16.28321 -15.85105 -15.61535 -15.17380 -14.83464 -14.80427 -14.38920 -14.29115 -14.04206 -13.88445 -13.62026 -13.27746 -13.13934 -12.68121 -12.59977 -12.34678 -12.08232 -11.91894 -11.68789 -11.39122 -11.26038 -11.17944 -10.93495 -10.78914 -10.69887 -10.58057 -10.43048 -10.27127 -10.00992 -9.99248 -9.91273 -9.41795 -9.23161 -8.82615 -8.47730 -8.40785 -7.35756 -6.06407 -4.07675 0.78620 1.28304 1.66860 2.12519 2.72484 3.27637 3.35832 3.39283 3.55885 4.08662 4.17858 4.39194 4.51646 4.66073 4.68730 4.79634 4.86632 4.94280 5.23042 5.28892 5.29347 5.31604 5.34415 5.44787 5.54825 5.57690 5.63267 5.72105 5.86395 5.91625 5.94447 5.96248 6.01408 6.11987 6.18663 6.20164 6.24847 6.26939 6.32398 6.39576 6.43367 6.65403 6.69569 6.77127 6.98639 7.22042 7.29747 7.75430 7.83214 8.04668 8.12246 8.47690 8.99596 9.56560 11.04142 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003262 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.758197 B = 8582.474418 C =10202.757753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.062 4.062 3 C -0.084 4.084 4 C -0.041 4.041 5 C 0.093 3.907 6 N -0.526 5.526 7 C 0.192 3.808 8 C -0.506 4.506 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.081 3.919 17 C -0.128 4.128 18 C -0.178 4.178 19 C -0.189 4.189 20 C -0.108 4.108 21 C -0.111 4.111 22 C 0.111 3.889 23 N -0.320 5.320 24 C 0.260 3.740 25 N -0.545 5.545 26 C 0.193 3.807 27 N -0.309 5.309 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.044 0.956 35 H -0.013 1.013 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.022 0.978 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.219 0.781 47 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 -18.004 -0.988 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.064 4.064 3 C -0.104 4.104 4 C -0.042 4.042 5 C -0.035 4.035 6 N -0.250 5.250 7 C 0.068 3.932 8 C -0.545 4.545 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.047 4.047 17 C -0.147 4.147 18 C -0.215 4.215 19 C -0.227 4.227 20 C -0.128 4.128 21 C -0.131 4.131 22 C 0.020 3.980 23 N -0.105 5.105 24 C -0.036 4.036 25 N -0.272 5.272 26 C -0.110 4.110 27 N -0.135 5.135 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.005 0.995 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.236 0.764 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.163 -17.707 -1.119 18.224 hybrid contribution 0.411 0.811 -0.417 1.000 sum -3.751 -16.896 -1.535 17.375 Atomic orbital electron populations 1.20716 0.90355 1.02376 1.02831 1.19807 0.96642 0.91228 0.98762 1.20975 0.93688 0.97105 0.98585 1.20265 0.93885 0.95540 0.94506 1.21049 0.97873 0.92602 0.91940 1.62164 1.46141 1.04340 1.12369 1.19796 0.94331 0.81530 0.97561 1.21185 0.98521 0.90246 1.44564 0.91924 1.24969 0.95618 0.98395 0.95515 1.69965 1.21973 1.13718 1.47991 0.86501 0.82215 0.81061 0.77998 1.19668 1.21062 1.21159 1.21705 0.94342 0.96736 0.91946 1.22221 0.96003 1.02323 0.94152 1.22979 0.98159 0.96685 1.03680 1.22944 1.05373 0.93783 1.00568 1.20931 1.00018 0.91026 1.00794 1.20854 0.91131 0.99132 1.01983 1.17213 0.90027 0.81885 1.08837 1.47604 1.24086 1.12031 1.26738 1.26213 0.98763 0.82899 0.95688 1.70595 1.08483 1.30446 1.17686 1.26095 0.99629 0.90974 0.94288 1.78234 1.02763 1.16328 1.16178 0.90484 0.92217 0.91167 0.84446 0.88536 0.94871 0.93797 0.99546 0.93004 0.91425 0.95946 0.87076 0.89276 0.89133 0.89368 0.89526 0.85239 0.85583 0.76440 0.76564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 8.87 36.00 0.32 -0.96 16 2 C -0.06 -0.82 5.90 -104.45 -0.62 -1.44 16 3 C -0.08 -1.19 9.33 -39.61 -0.37 -1.56 16 4 C -0.04 -0.59 4.91 -104.59 -0.51 -1.10 16 5 C 0.09 1.60 4.96 -4.98 -0.02 1.57 16 6 N -0.53 -10.25 4.44 -237.52 -1.06 -11.31 16 7 C 0.19 4.66 4.60 -4.98 -0.02 4.64 16 8 C -0.51 -13.41 8.53 -34.44 -0.29 -13.71 16 9 H 0.06 1.63 7.39 -52.49 -0.39 1.25 16 10 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 12 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.08 1.34 5.03 -3.82 -0.02 1.33 16 17 C -0.13 -2.10 4.69 -90.62 -0.42 -2.52 16 18 C -0.18 -2.72 10.03 -26.69 -0.27 -2.99 16 19 C -0.19 -2.49 10.25 -26.69 -0.27 -2.76 16 20 C -0.11 -1.32 7.85 -39.61 -0.31 -1.63 16 21 C -0.11 -1.23 9.65 -39.41 -0.38 -1.61 16 22 C 0.11 1.39 6.28 -83.59 -0.52 0.86 16 23 N -0.32 -3.85 3.14 -11.80 -0.04 -3.89 16 24 C 0.26 2.68 12.32 -90.37 -1.11 1.56 16 25 N -0.55 -6.24 11.19 -15.74 -0.18 -6.42 16 26 C 0.19 2.05 13.03 -91.77 -1.20 0.86 16 27 N -0.31 -3.88 11.07 29.30 0.32 -3.56 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 30 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 31 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 32 H 0.10 1.81 6.92 -51.93 -0.36 1.45 16 33 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 34 H 0.04 1.15 6.80 -51.93 -0.35 0.80 16 35 H -0.01 -0.35 8.06 -51.93 -0.42 -0.77 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.07 1.00 5.46 -51.93 -0.28 0.71 16 38 H 0.02 0.38 7.85 -51.93 -0.41 -0.03 16 39 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 40 H 0.09 1.36 8.03 -51.93 -0.42 0.95 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.13 1.39 7.88 -52.49 -0.41 0.98 16 45 H 0.13 1.09 8.04 -52.48 -0.42 0.67 16 46 H 0.22 1.41 8.06 -52.48 -0.42 0.99 16 47 H 0.22 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -30.60 388.60 -12.69 -43.29 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.19 Total: 3.12 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -6.13 Total: -18.01 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.21 Total: -50.20 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.60 -12.69 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.347 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds