Wall clock time and date at job start Tue Mar 31 2020 14:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38137 * 120.03546 * 2 1 4 4 C 1.38259 * 120.06636 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.93274 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47373 * 89.99717 * 5 4 3 7 7 C 1.46905 * 111.00024 * 190.00201 * 6 5 4 8 8 C 1.50690 * 109.47233 * 71.54907 * 7 6 5 9 9 H 1.08001 * 120.00373 * 355.22878 * 8 7 6 10 10 C 1.37882 * 120.00135 * 175.22797 * 8 7 6 11 11 N 1.31519 * 119.99680 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00131 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47035 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46952 * 119.99819 * 12 10 8 15 15 H 1.48495 * 109.47198 * 239.99800 * 12 10 8 16 16 C 1.46899 * 110.99746 * 66.04900 * 6 5 4 17 17 C 1.53006 * 109.46829 * 190.53179 * 16 6 5 18 18 C 1.53005 * 117.49613 * 243.31558 * 17 16 6 19 19 C 1.52998 * 117.49713 * 174.65710 * 17 16 6 20 20 C 1.38301 * 120.13336 * 0.29240 * 4 3 2 21 21 C 1.38095 * 120.06479 * 359.45444 * 20 4 3 22 22 C 1.38821 * 120.03351 * 179.97438 * 2 1 3 23 23 N 1.40198 * 120.06499 * 359.97438 * 22 2 1 24 24 C 1.34726 * 126.84191 * 227.18533 * 23 22 2 25 25 N 1.30853 * 108.03352 * 179.97438 * 24 23 22 26 26 C 1.33258 * 109.84277 * 0.02562 * 25 24 23 27 27 N 1.30750 * 108.99982 * 359.70546 * 26 25 24 28 28 H 1.09000 * 109.46599 * 95.32367 * 1 2 3 29 29 H 1.09002 * 109.47485 * 215.31802 * 1 2 3 30 30 H 1.08998 * 109.47040 * 335.32392 * 1 2 3 31 31 H 1.07998 * 119.96547 * 359.97235 * 3 2 1 32 32 H 1.09001 * 109.46840 * 329.99625 * 5 4 3 33 33 H 1.09004 * 109.47004 * 210.00170 * 5 4 3 34 34 H 1.08997 * 109.46952 * 191.55300 * 7 6 5 35 35 H 1.09005 * 109.46563 * 311.54717 * 7 6 5 36 36 H 0.97000 * 119.99536 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.47100 * 310.52238 * 16 6 5 38 38 H 1.08997 * 109.47492 * 70.53460 * 16 6 5 39 39 H 1.08996 * 115.55158 * 28.98452 * 17 16 6 40 40 H 1.09005 * 117.50139 * 359.97438 * 18 17 16 41 41 H 1.09002 * 117.49835 * 145.02431 * 18 17 16 42 42 H 1.09004 * 117.49679 * 214.97487 * 19 17 16 43 43 H 1.09000 * 117.50316 * 359.97438 * 19 17 16 44 44 H 1.08002 * 119.96533 * 179.70506 * 20 4 3 45 45 H 1.08009 * 120.03267 * 180.29486 * 21 20 4 46 46 H 1.08003 * 125.98641 * 359.97438 * 24 23 22 47 47 H 1.07998 * 125.50216 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.3322 2.5030 0.0011 6 7 4.5758 2.9272 1.3862 7 6 5.0915 4.3020 1.4328 8 6 3.9881 5.2648 1.0776 9 1 3.0241 4.8904 0.7663 10 6 4.2091 6.6239 1.1502 11 7 5.3832 7.0798 1.5289 12 14 2.8410 7.8174 0.7106 13 1 1.6272 7.0567 0.3195 14 1 2.5322 8.6710 1.8859 15 1 3.2758 8.6733 -0.4223 16 6 5.4878 1.9994 2.0683 17 6 5.5122 2.3163 3.5650 18 6 6.8398 2.7812 4.1671 19 6 6.3100 1.3780 4.4728 20 6 4.2759 0.0009 -0.0050 21 6 3.5903 -1.1978 0.0002 22 6 2.2018 -1.2018 0.0005 23 7 1.5029 -2.4172 0.0016 24 6 1.7357 -3.4822 0.7932 25 7 0.8692 -4.4131 0.4850 26 6 0.0720 -3.9833 -0.4924 27 7 0.4167 -2.7648 -0.8181 28 1 -0.3632 -0.0954 -1.0233 29 1 -0.3634 -0.8385 0.5941 30 1 -0.3633 0.9338 0.4290 31 1 1.6584 2.1312 -0.0005 32 1 3.7420 3.2617 -0.5128 33 1 5.2851 2.3744 -0.5124 34 1 5.4547 4.5199 2.4371 35 1 5.9094 4.4075 0.7199 36 1 5.5385 8.0359 1.5802 37 1 5.1434 0.9760 1.9193 38 1 6.4915 2.1086 1.6574 39 1 4.5973 2.7497 3.9688 40 1 7.6958 2.8610 3.4970 41 1 6.7981 3.5202 4.9673 42 1 5.9200 1.1945 5.4740 43 1 6.8171 0.5347 4.0039 44 1 5.3559 0.0047 -0.0094 45 1 4.1336 -2.1313 0.0007 46 1 2.5031 -3.5551 1.5496 47 1 -0.7326 -4.5481 -0.9396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:13 Heat of formation + Delta-G solvation = 135.647790 kcal Electronic energy + Delta-G solvation = -27193.743926 eV Core-core repulsion = 23571.803087 eV Total energy + Delta-G solvation = -3621.940839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.25100 -40.77158 -39.10648 -37.06668 -35.30985 -34.39046 -33.76377 -32.28287 -31.33757 -29.53955 -28.10619 -27.75184 -25.83293 -24.22049 -23.47242 -23.14542 -22.77888 -22.39456 -21.27558 -20.95611 -19.14006 -18.51579 -17.34644 -17.07189 -16.59663 -16.51257 -16.23969 -15.83037 -15.81468 -15.34528 -15.09383 -14.97558 -14.72667 -14.53853 -14.25283 -14.16537 -13.84072 -13.47214 -13.45530 -13.22535 -13.00869 -12.73598 -12.71684 -12.50318 -12.35261 -12.30821 -12.21420 -12.04165 -11.74450 -11.36248 -11.30466 -11.10827 -11.03986 -10.85056 -10.69335 -10.53678 -9.81595 -9.44748 -8.95996 -8.16889 -6.25246 -0.16240 0.30782 0.80744 1.28817 1.40209 1.41941 1.53919 1.94341 2.40864 2.53406 2.98176 3.15755 3.42116 3.44461 3.65522 3.73447 3.75477 3.91491 4.01251 4.05488 4.11170 4.24937 4.30591 4.33442 4.44930 4.57027 4.59480 4.64150 4.67684 4.72420 4.81568 4.84998 4.91384 4.93925 5.06825 5.08019 5.14353 5.22542 5.27018 5.30102 5.36249 5.38025 5.44850 5.45851 5.65107 5.70110 5.71982 6.07955 6.11978 6.39166 6.67922 6.90990 7.03225 7.43736 8.93718 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003262 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.758197 B = 8582.474418 C =10202.757753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.054 4.054 5 C 0.098 3.902 6 N -0.533 5.533 7 C 0.211 3.789 8 C -0.516 4.516 9 H 0.061 0.939 10 C 0.004 3.996 11 N -0.933 5.933 12 Si 0.960 3.040 13 H -0.263 1.263 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.087 3.913 17 C -0.155 4.155 18 C -0.193 4.193 19 C -0.149 4.149 20 C -0.102 4.102 21 C -0.097 4.097 22 C 0.113 3.887 23 N -0.332 5.332 24 C 0.267 3.733 25 N -0.565 5.565 26 C 0.196 3.804 27 N -0.342 5.342 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.019 0.981 35 H -0.043 1.043 36 H 0.262 0.738 37 H 0.094 0.906 38 H 0.019 0.981 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.160 0.840 46 H 0.255 0.745 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 -20.749 -0.763 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.055 4.055 5 C -0.029 4.029 6 N -0.257 5.257 7 C 0.085 3.915 8 C -0.555 4.555 9 H 0.080 0.920 10 C -0.194 4.194 11 N -0.574 5.574 12 Si 0.785 3.215 13 H -0.187 1.187 14 H -0.208 1.208 15 H -0.207 1.207 16 C -0.041 4.041 17 C -0.174 4.174 18 C -0.230 4.230 19 C -0.186 4.186 20 C -0.121 4.121 21 C -0.117 4.117 22 C 0.022 3.978 23 N -0.117 5.117 24 C -0.028 4.028 25 N -0.292 5.292 26 C -0.106 4.106 27 N -0.167 5.167 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.037 0.963 35 H -0.025 1.025 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.037 0.963 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.166 0.834 45 H 0.177 0.823 46 H 0.270 0.730 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -4.459 -20.478 -0.898 20.977 hybrid contribution 0.477 1.545 -0.480 1.687 sum -3.982 -18.933 -1.378 19.396 Atomic orbital electron populations 1.20633 0.89930 1.02258 1.02636 1.19879 0.97085 0.91341 0.99163 1.20887 0.93782 0.97200 0.99567 1.19979 0.93777 0.94869 0.96923 1.20916 0.98002 0.93672 0.90334 1.62055 1.46625 1.02764 1.14208 1.19370 0.92789 0.84339 0.94981 1.21515 0.98935 0.91044 1.43985 0.92046 1.25806 0.97860 1.00257 0.95480 1.70087 1.23930 1.14108 1.49253 0.85471 0.79548 0.78715 0.77726 1.18735 1.20768 1.20655 1.21745 0.93546 0.97081 0.91738 1.22154 0.95483 1.05190 0.94534 1.22999 0.97511 0.98845 1.03688 1.23037 1.02237 0.92823 1.00481 1.21070 1.00893 0.90349 0.99826 1.21113 0.90550 0.99928 1.00068 1.17357 0.90693 0.81885 1.07856 1.47617 1.24407 1.12185 1.27471 1.26980 0.98714 0.81814 0.95292 1.70653 1.09199 1.31058 1.18251 1.26747 0.99685 0.90541 0.93606 1.78212 1.03639 1.17409 1.17460 0.90619 0.92673 0.90900 0.85719 0.91080 0.94529 0.96294 1.02520 0.92915 0.88844 0.96252 0.89610 0.89625 0.89791 0.87657 0.87127 0.83394 0.82281 0.72961 0.73700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.32 8.87 71.23 0.63 -1.68 16 2 C -0.07 -1.85 5.90 -19.75 -0.12 -1.97 16 3 C -0.10 -2.70 9.33 22.25 0.21 -2.49 16 4 C -0.05 -1.53 4.91 -19.84 -0.10 -1.63 16 5 C 0.10 3.46 4.96 85.56 0.42 3.88 16 6 N -0.53 -21.37 4.44 -905.37 -4.02 -25.39 16 7 C 0.21 10.75 4.60 85.55 0.39 11.14 16 8 C -0.52 -28.36 8.53 25.60 0.22 -28.14 16 9 H 0.06 3.31 7.39 -2.91 -0.02 3.29 16 10 C 0.00 0.22 5.46 84.66 0.46 0.68 16 11 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 12 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 C 0.09 2.84 5.03 86.31 0.43 3.27 16 17 C -0.15 -5.04 4.69 -10.79 -0.05 -5.09 16 18 C -0.19 -5.91 10.03 30.62 0.31 -5.60 16 19 C -0.15 -3.54 10.25 30.62 0.31 -3.22 16 20 C -0.10 -2.22 7.85 22.25 0.17 -2.04 16 21 C -0.10 -1.80 9.65 22.38 0.22 -1.59 16 22 C 0.11 2.56 6.28 38.09 0.24 2.80 16 23 N -0.33 -7.17 3.14 -191.25 -0.60 -7.77 16 24 C 0.27 4.63 12.32 180.26 2.22 6.85 16 25 N -0.56 -11.40 11.19 -203.73 -2.28 -13.68 16 26 C 0.20 3.75 13.03 180.75 2.35 6.11 16 27 N -0.34 -7.97 11.07 -61.22 -0.68 -8.65 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.34 7.20 -2.39 -0.02 1.32 16 30 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 31 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 32 H 0.07 2.82 6.92 -2.39 -0.02 2.80 16 33 H 0.04 1.24 8.06 -2.39 -0.02 1.22 16 34 H 0.02 1.05 6.80 -2.39 -0.02 1.03 16 35 H -0.04 -2.38 8.06 -2.38 -0.02 -2.40 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.09 2.55 5.46 -2.39 -0.01 2.54 16 38 H 0.02 0.65 7.85 -2.39 -0.02 0.63 16 39 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.09 2.64 8.03 -2.38 -0.02 2.62 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.15 2.67 7.88 -2.91 -0.02 2.64 16 45 H 0.16 1.94 8.04 -2.91 -0.02 1.92 16 46 H 0.25 2.14 8.06 -2.91 -0.02 2.11 16 47 H 0.25 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -68.51 388.60 4.02 -64.48 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.96 Total: 18.89 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 8.33 Total: -18.73 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -7.30 Total: -110.50 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.51 4.02 -64.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.132 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds