Wall clock time and date at job start Tue Mar 31 2020 14:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35575 * 117.00174 * 2 1 4 4 N 1.31562 * 119.20160 * 3.96585 * 3 2 1 5 5 C 1.33758 * 121.26378 * 180.02562 * 4 3 2 6 6 C 1.40545 * 121.00672 * 180.02562 * 5 4 3 7 7 C 1.36119 * 119.76028 * 179.97438 * 6 5 4 8 8 C 1.39315 * 121.04244 * 0.02562 * 7 6 5 9 9 C 1.36177 * 120.85195 * 0.02562 * 8 7 6 10 10 C 1.40368 * 119.63835 * 359.95064 * 9 8 7 11 11 C 1.40916 * 121.29164 * 180.29879 * 10 9 8 12 12 C 1.36333 * 118.25669 * 180.23652 * 11 10 9 13 13 C 1.50693 * 120.05787 * 179.78861 * 12 11 10 14 14 N 1.46901 * 109.47038 * 105.81135 * 13 12 11 15 15 C 1.46904 * 110.99972 * 288.22355 * 14 13 12 16 16 C 1.50696 * 109.47304 * 169.99843 * 15 14 13 17 17 H 1.08003 * 119.99717 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00531 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00325 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99887 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46730 * 89.99821 * 20 18 16 22 22 H 1.48494 * 109.47185 * 210.00030 * 20 18 16 23 23 H 1.48504 * 109.46839 * 330.00374 * 20 18 16 24 24 C 1.46907 * 111.00078 * 164.27074 * 14 13 12 25 25 C 1.52991 * 109.46818 * 287.74856 * 24 14 13 26 26 C 1.53001 * 117.50242 * 245.58274 * 25 24 14 27 27 C 1.53001 * 117.49675 * 176.92318 * 25 24 14 28 28 H 1.09008 * 109.47175 * 64.14043 * 1 2 3 29 29 H 1.09002 * 109.46967 * 184.13705 * 1 2 3 30 30 H 1.08995 * 109.47524 * 304.13723 * 1 2 3 31 31 H 1.07997 * 120.12288 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.48310 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.57198 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.17920 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.87427 * 0.03101 * 11 10 9 36 36 H 1.09005 * 109.46850 * 345.81678 * 13 12 11 37 37 H 1.09000 * 109.47473 * 225.81458 * 13 12 11 38 38 H 1.09001 * 109.47193 * 290.00236 * 15 14 13 39 39 H 1.08999 * 109.47326 * 50.00034 * 15 14 13 40 40 H 0.96999 * 119.99759 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46601 * 167.74926 * 24 14 13 42 42 H 1.08999 * 109.46461 * 47.74747 * 24 14 13 43 43 H 1.09004 * 115.55472 * 31.25489 * 25 24 14 44 44 H 1.09002 * 117.49278 * 359.97438 * 26 25 24 45 45 H 1.08997 * 117.50287 * 145.02116 * 26 25 24 46 46 H 1.09009 * 117.49621 * 214.98057 * 27 25 24 47 47 H 1.08998 * 117.49927 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3151 2.3000 0.0794 5 6 1.8792 3.5128 0.0822 6 6 1.0949 4.6759 0.1678 7 6 1.6956 5.8974 0.1692 8 6 3.0811 6.0166 0.0863 9 6 3.8733 4.9122 0.0010 10 6 3.2877 3.6366 -0.0025 11 6 4.0744 2.4703 -0.0831 12 6 3.4407 1.2632 -0.0868 13 6 4.2422 -0.0098 -0.1764 14 7 4.2614 -0.6697 1.1359 15 6 5.1080 0.0675 2.0835 16 6 4.9125 -0.4894 3.4701 17 1 4.2282 -1.3093 3.6312 18 6 5.6080 0.0469 4.5328 19 7 5.4378 -0.4394 5.7429 20 14 6.7933 1.4636 4.2539 21 1 6.0683 2.7514 4.3994 22 1 7.8889 1.3966 5.2539 23 1 7.3646 1.3690 2.8864 24 6 4.6988 -2.0671 1.0161 25 6 3.5904 -2.8939 0.3616 26 6 2.9238 -3.9789 1.2097 27 6 3.8817 -4.3696 0.0814 28 1 -0.3634 0.4483 -0.9248 29 1 -0.3633 -1.0250 0.0741 30 1 -0.3634 0.5767 0.8505 31 1 0.0195 4.6008 0.2332 32 1 1.0886 6.7882 0.2355 33 1 3.5328 6.9977 0.0888 34 1 4.9462 5.0173 -0.0632 35 1 5.1510 2.5311 -0.1439 36 1 5.2625 0.2240 -0.4805 37 1 3.7874 -0.6746 -0.9108 38 1 6.1536 -0.0371 1.7940 39 1 4.8318 1.1218 2.0732 40 1 5.9269 -0.0618 6.4906 41 1 4.9133 -2.4668 2.0072 42 1 5.5984 -2.1148 0.4024 43 1 2.9654 -2.3597 -0.3541 44 1 3.2752 -4.1039 2.2339 45 1 1.8603 -4.1587 1.0519 46 1 3.4479 -4.8062 -0.8183 47 1 4.8631 -4.7512 0.3631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:52 Heat of formation + Delta-G solvation = 53.612907 kcal Electronic energy + Delta-G solvation = -28125.026279 eV Core-core repulsion = 24467.235390 eV Total energy + Delta-G solvation = -3657.790890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91148 -38.70812 -37.84114 -36.32935 -35.39967 -33.40601 -32.40400 -30.78316 -29.70171 -28.17714 -27.24637 -26.57734 -24.20037 -23.29553 -22.30046 -21.97247 -21.95497 -20.57635 -19.54565 -18.53481 -17.80160 -16.86597 -16.60031 -15.87033 -15.53020 -15.24804 -14.83534 -14.58567 -14.33026 -14.12668 -13.85043 -13.79328 -13.55140 -13.50513 -13.09891 -12.90598 -12.29984 -12.21624 -12.07630 -11.80984 -11.76251 -11.57923 -11.49232 -11.13508 -10.98649 -10.82190 -10.59468 -10.51837 -10.47386 -10.16439 -9.87208 -9.82305 -9.48296 -9.40493 -9.22332 -8.55806 -8.23773 -7.97244 -7.33852 -6.04210 -4.00667 0.55946 1.02922 2.12965 3.03784 3.27494 3.32155 3.34459 3.34831 4.17210 4.26686 4.38867 4.41901 4.69751 4.78493 4.89393 4.97412 5.05979 5.20314 5.25920 5.28818 5.34072 5.40249 5.42521 5.45140 5.48307 5.53061 5.67306 5.79290 5.84839 5.91624 5.93547 6.01143 6.04074 6.12431 6.15946 6.26382 6.32918 6.37358 6.44383 6.51885 6.54122 6.58441 6.78582 6.83152 6.93068 6.98182 7.48517 7.61216 7.92428 8.02836 8.07525 8.67045 9.05770 9.57881 11.08947 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.008773 B = 0.005455 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.953118 B = 5131.660932 C = 7331.064015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.282 6.282 3 C 0.382 3.618 4 N -0.549 5.549 5 C 0.169 3.831 6 C -0.108 4.108 7 C -0.096 4.096 8 C -0.140 4.140 9 C -0.079 4.079 10 C -0.131 4.131 11 C -0.032 4.032 12 C -0.115 4.115 13 C 0.098 3.902 14 N -0.513 5.513 15 C 0.161 3.839 16 C -0.505 4.505 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.869 3.131 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.093 3.907 25 C -0.133 4.133 26 C -0.172 4.172 27 C -0.193 4.193 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.036 0.964 37 H 0.082 0.918 38 H -0.013 1.013 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.093 0.907 42 H 0.023 0.977 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 5.713 -15.627 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.186 6.186 3 C 0.189 3.811 4 N -0.277 5.277 5 C 0.048 3.952 6 C -0.127 4.127 7 C -0.116 4.116 8 C -0.158 4.158 9 C -0.098 4.098 10 C -0.134 4.134 11 C -0.058 4.058 12 C -0.119 4.119 13 C -0.030 4.030 14 N -0.236 5.236 15 C 0.035 3.965 16 C -0.543 4.543 17 H 0.100 0.900 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.696 3.304 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.035 4.035 25 C -0.152 4.152 26 C -0.209 4.209 27 C -0.230 4.230 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.005 0.995 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.041 0.959 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.235 5.439 -15.185 17.678 hybrid contribution 2.049 1.035 -0.149 2.300 sum -5.186 6.474 -15.333 17.433 Atomic orbital electron populations 1.22830 0.78029 1.02787 1.01936 1.86364 1.22016 1.23922 1.86255 1.19757 0.88666 0.84610 0.88062 1.67665 1.39163 0.97851 1.22980 1.18388 0.89936 0.90681 0.96217 1.20662 0.99879 0.90377 1.01757 1.20813 0.94867 0.97251 0.98689 1.20776 0.93799 0.98616 1.02653 1.20935 0.99823 0.91191 0.97820 1.18713 0.94023 0.94537 1.06079 1.21257 1.00055 0.90368 0.94103 1.19695 0.91443 0.96642 1.04076 1.20905 0.96277 0.91952 0.93906 1.61824 1.54620 1.01213 1.05955 1.20203 0.89604 0.94156 0.92538 1.21015 1.25176 1.18900 0.89214 0.89996 1.24875 0.96623 0.96617 0.95095 1.69890 1.42627 1.42174 0.99199 0.86951 0.81476 0.83678 0.78266 1.20175 1.21186 1.19238 1.21598 0.92794 0.88268 1.00826 1.22313 1.01257 0.89442 1.02148 1.22918 0.97576 1.03907 0.96468 1.22948 1.00927 0.98919 1.00236 0.93053 0.88854 0.92044 0.85180 0.85743 0.85955 0.85556 0.84035 0.94642 0.89997 0.99521 0.95867 0.92734 0.88829 0.95880 0.87826 0.88648 0.89654 0.89638 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.44 101.05 1.06 1.57 16 2 O -0.28 -4.72 9.79 -18.42 -0.18 -4.90 16 3 C 0.38 6.78 7.47 -17.01 -0.13 6.65 16 4 N -0.55 -9.55 9.06 -11.05 -0.10 -9.65 16 5 C 0.17 2.76 6.60 -84.86 -0.56 2.19 16 6 C -0.11 -1.46 9.98 -39.47 -0.39 -1.85 16 7 C -0.10 -1.09 9.94 -39.94 -0.40 -1.49 16 8 C -0.14 -1.59 9.96 -39.92 -0.40 -1.99 16 9 C -0.08 -1.02 9.77 -39.52 -0.39 -1.41 16 10 C -0.13 -2.06 5.74 -106.78 -0.61 -2.67 16 11 C -0.03 -0.52 8.76 -39.25 -0.34 -0.86 16 12 C -0.12 -2.00 4.66 -104.65 -0.49 -2.49 16 13 C 0.10 1.68 4.50 -4.98 -0.02 1.65 16 14 N -0.51 -10.52 4.40 -237.52 -1.04 -11.57 16 15 C 0.16 3.87 3.64 -4.98 -0.02 3.85 16 16 C -0.50 -14.29 8.83 -34.44 -0.30 -14.59 16 17 H 0.08 2.53 7.50 -52.48 -0.39 2.14 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 20 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 24 C 0.09 1.75 5.09 -3.82 -0.02 1.73 16 25 C -0.13 -2.12 5.61 -90.62 -0.51 -2.63 16 26 C -0.17 -2.61 10.18 -26.69 -0.27 -2.88 16 27 C -0.19 -2.61 10.25 -26.69 -0.27 -2.88 16 28 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.85 7.92 -51.93 -0.41 0.44 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.14 1.96 8.01 -52.49 -0.42 1.54 16 36 H 0.04 0.57 7.86 -51.93 -0.41 0.16 16 37 H 0.08 1.27 6.36 -51.93 -0.33 0.94 16 38 H -0.01 -0.31 7.18 -51.93 -0.37 -0.68 16 39 H 0.02 0.57 6.11 -51.93 -0.32 0.26 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.09 2.02 6.33 -51.93 -0.33 1.70 16 42 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 43 H 0.10 1.63 6.83 -51.93 -0.35 1.28 16 44 H 0.10 1.58 8.04 -51.93 -0.42 1.17 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 47 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -32.41 383.76 -10.75 -43.16 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.14 Total: 3.32 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -4.17 Total: -16.16 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.37 Total: -48.10 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.18 Total: -4.90 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.41 -10.75 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.769 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds