Wall clock time and date at job start Tue Mar 31 2020 14:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35575 * 117.00174 * 2 1 4 4 N 1.31562 * 119.20160 * 3.96585 * 3 2 1 5 5 C 1.33758 * 121.26378 * 180.02562 * 4 3 2 6 6 C 1.40545 * 121.00672 * 180.02562 * 5 4 3 7 7 C 1.36119 * 119.76028 * 179.97438 * 6 5 4 8 8 C 1.39315 * 121.04244 * 0.02562 * 7 6 5 9 9 C 1.36177 * 120.85195 * 0.02562 * 8 7 6 10 10 C 1.40368 * 119.63835 * 359.95064 * 9 8 7 11 11 C 1.40916 * 121.29164 * 180.29879 * 10 9 8 12 12 C 1.36333 * 118.25669 * 180.23652 * 11 10 9 13 13 C 1.50693 * 120.05787 * 179.78861 * 12 11 10 14 14 N 1.46901 * 109.47038 * 105.81135 * 13 12 11 15 15 C 1.46904 * 110.99972 * 288.22355 * 14 13 12 16 16 C 1.50696 * 109.47304 * 169.99843 * 15 14 13 17 17 H 1.08003 * 119.99717 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00531 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00325 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99887 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46730 * 89.99821 * 20 18 16 22 22 H 1.48494 * 109.47185 * 210.00030 * 20 18 16 23 23 H 1.48504 * 109.46839 * 330.00374 * 20 18 16 24 24 C 1.46907 * 111.00078 * 164.27074 * 14 13 12 25 25 C 1.52991 * 109.46818 * 287.74856 * 24 14 13 26 26 C 1.53001 * 117.50242 * 245.58274 * 25 24 14 27 27 C 1.53001 * 117.49675 * 176.92318 * 25 24 14 28 28 H 1.09008 * 109.47175 * 64.14043 * 1 2 3 29 29 H 1.09002 * 109.46967 * 184.13705 * 1 2 3 30 30 H 1.08995 * 109.47524 * 304.13723 * 1 2 3 31 31 H 1.07997 * 120.12288 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.48310 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.57198 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.17920 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.87427 * 0.03101 * 11 10 9 36 36 H 1.09005 * 109.46850 * 345.81678 * 13 12 11 37 37 H 1.09000 * 109.47473 * 225.81458 * 13 12 11 38 38 H 1.09001 * 109.47193 * 290.00236 * 15 14 13 39 39 H 1.08999 * 109.47326 * 50.00034 * 15 14 13 40 40 H 0.96999 * 119.99759 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46601 * 167.74926 * 24 14 13 42 42 H 1.08999 * 109.46461 * 47.74747 * 24 14 13 43 43 H 1.09004 * 115.55472 * 31.25489 * 25 24 14 44 44 H 1.09002 * 117.49278 * 359.97438 * 26 25 24 45 45 H 1.08997 * 117.50287 * 145.02116 * 26 25 24 46 46 H 1.09009 * 117.49621 * 214.98057 * 27 25 24 47 47 H 1.08998 * 117.49927 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3151 2.3000 0.0794 5 6 1.8792 3.5128 0.0822 6 6 1.0949 4.6759 0.1678 7 6 1.6956 5.8974 0.1692 8 6 3.0811 6.0166 0.0863 9 6 3.8733 4.9122 0.0010 10 6 3.2877 3.6366 -0.0025 11 6 4.0744 2.4703 -0.0831 12 6 3.4407 1.2632 -0.0868 13 6 4.2422 -0.0098 -0.1764 14 7 4.2614 -0.6697 1.1359 15 6 5.1080 0.0675 2.0835 16 6 4.9125 -0.4894 3.4701 17 1 4.2282 -1.3093 3.6312 18 6 5.6080 0.0469 4.5328 19 7 5.4378 -0.4394 5.7429 20 14 6.7933 1.4636 4.2539 21 1 6.0683 2.7514 4.3994 22 1 7.8889 1.3966 5.2539 23 1 7.3646 1.3690 2.8864 24 6 4.6988 -2.0671 1.0161 25 6 3.5904 -2.8939 0.3616 26 6 2.9238 -3.9789 1.2097 27 6 3.8817 -4.3696 0.0814 28 1 -0.3634 0.4483 -0.9248 29 1 -0.3633 -1.0250 0.0741 30 1 -0.3634 0.5767 0.8505 31 1 0.0195 4.6008 0.2332 32 1 1.0886 6.7882 0.2355 33 1 3.5328 6.9977 0.0888 34 1 4.9462 5.0173 -0.0632 35 1 5.1510 2.5311 -0.1439 36 1 5.2625 0.2240 -0.4805 37 1 3.7874 -0.6746 -0.9108 38 1 6.1536 -0.0371 1.7940 39 1 4.8318 1.1218 2.0732 40 1 5.9269 -0.0618 6.4906 41 1 4.9133 -2.4668 2.0072 42 1 5.5984 -2.1148 0.4024 43 1 2.9654 -2.3597 -0.3541 44 1 3.2752 -4.1039 2.2339 45 1 1.8603 -4.1587 1.0519 46 1 3.4479 -4.8062 -0.8183 47 1 4.8631 -4.7512 0.3631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:51 Heat of formation + Delta-G solvation = 32.896593 kcal Electronic energy + Delta-G solvation = -28125.924606 eV Core-core repulsion = 24467.235390 eV Total energy + Delta-G solvation = -3658.689217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04803 -39.82657 -39.24988 -37.49531 -36.70111 -34.89385 -34.24479 -32.00014 -30.74292 -30.06922 -28.34399 -27.86397 -25.83901 -24.40958 -23.64020 -23.16616 -23.05578 -22.16725 -20.95443 -19.65062 -19.04125 -18.85810 -17.78789 -17.11477 -16.80189 -16.48925 -16.24137 -15.99819 -15.70745 -15.30528 -15.24235 -15.04804 -14.78353 -14.74056 -14.59701 -14.20644 -14.02787 -13.77073 -13.43357 -13.07917 -12.89479 -12.77039 -12.66068 -12.47576 -12.43327 -12.30200 -12.12175 -11.95146 -11.85706 -11.56263 -11.47177 -11.32411 -11.07159 -10.78283 -10.71788 -10.61005 -9.35319 -9.05334 -8.92311 -8.28195 -6.30197 -0.52121 -0.07911 1.03701 1.30521 1.32335 1.42282 1.96788 2.19739 2.32635 2.92470 3.05810 3.12324 3.28947 3.39319 3.69437 3.77237 3.81127 3.99595 4.09409 4.12726 4.20073 4.27081 4.37386 4.43115 4.44956 4.47058 4.49943 4.64880 4.66809 4.71909 4.75427 4.77987 4.84019 4.85069 4.94617 5.00340 5.04487 5.10111 5.12365 5.16805 5.35114 5.45586 5.49478 5.50389 5.54663 5.55645 5.90057 6.02414 6.31742 6.42688 6.67906 6.76234 6.86168 7.32642 8.88569 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.008773 B = 0.005455 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.953118 B = 5131.660932 C = 7331.064015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.299 6.299 3 C 0.361 3.639 4 N -0.563 5.563 5 C 0.139 3.861 6 C -0.129 4.129 7 C -0.082 4.082 8 C -0.133 4.133 9 C -0.089 4.089 10 C -0.151 4.151 11 C -0.032 4.032 12 C -0.142 4.142 13 C 0.106 3.894 14 N -0.528 5.528 15 C 0.176 3.824 16 C -0.508 4.508 17 H 0.035 0.965 18 C 0.007 3.993 19 N -0.949 5.949 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.243 1.243 24 C 0.097 3.903 25 C -0.143 4.143 26 C -0.185 4.185 27 C -0.162 4.162 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.046 0.954 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.050 0.950 37 H 0.095 0.905 38 H -0.010 1.010 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.110 0.890 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 8.193 -17.968 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.203 6.203 3 C 0.168 3.832 4 N -0.291 5.291 5 C 0.019 3.981 6 C -0.148 4.148 7 C -0.102 4.102 8 C -0.150 4.150 9 C -0.108 4.108 10 C -0.153 4.153 11 C -0.057 4.057 12 C -0.145 4.145 13 C -0.022 4.022 14 N -0.252 5.252 15 C 0.049 3.951 16 C -0.547 4.547 17 H 0.054 0.946 18 C -0.190 4.190 19 N -0.590 5.590 20 Si 0.762 3.238 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.166 1.166 24 C -0.030 4.030 25 C -0.161 4.161 26 C -0.222 4.222 27 C -0.199 4.199 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.008 0.992 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.128 0.872 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.133 0.867 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.413 7.910 -17.557 20.296 hybrid contribution 1.663 0.335 0.594 1.798 sum -4.750 8.245 -16.963 19.449 Atomic orbital electron populations 1.22987 0.76640 1.04152 1.01845 1.86321 1.23542 1.23974 1.86466 1.19976 0.89205 0.84943 0.89060 1.67656 1.39663 0.98369 1.23369 1.18905 0.91046 0.91067 0.97099 1.20901 1.00367 0.90521 1.02961 1.21289 0.95521 0.97547 0.95812 1.21268 0.93717 0.99787 1.00269 1.21279 1.01360 0.90429 0.97713 1.18994 0.93885 0.95743 1.06692 1.21574 1.01069 0.90197 0.92900 1.19789 0.91474 0.97132 1.06154 1.20890 0.97221 0.92111 0.91970 1.61697 1.53978 1.01811 1.07676 1.19880 0.90213 0.93981 0.91007 1.21238 1.23891 1.17602 0.91938 0.94639 1.25818 0.98783 0.99784 0.94591 1.70058 1.44327 1.44228 1.00381 0.85830 0.78929 0.79547 0.79460 1.19600 1.20648 1.16619 1.21489 0.94613 0.87845 0.99071 1.22182 1.00921 0.90366 1.02640 1.22921 0.98942 1.04499 0.95836 1.23031 1.00504 0.96325 1.00066 0.91925 0.86503 0.93529 0.84492 0.82133 0.82327 0.83239 0.82124 0.93172 0.88665 0.99219 0.96071 0.92607 0.92883 0.94643 0.87201 0.91227 0.88098 0.86690 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 10.44 113.37 1.18 2.21 16 2 O -0.30 -10.24 9.79 -88.82 -0.87 -11.11 16 3 C 0.36 13.07 7.47 85.16 0.64 13.71 16 4 N -0.56 -19.94 9.06 -302.15 -2.74 -22.68 16 5 C 0.14 4.50 6.60 40.25 0.27 4.76 16 6 C -0.13 -3.29 9.98 22.34 0.22 -3.07 16 7 C -0.08 -1.57 9.94 22.04 0.22 -1.35 16 8 C -0.13 -2.45 9.96 22.05 0.22 -2.23 16 9 C -0.09 -2.04 9.77 22.31 0.22 -1.82 16 10 C -0.15 -4.54 5.74 -21.27 -0.12 -4.66 16 11 C -0.03 -0.99 8.76 22.48 0.20 -0.79 16 12 C -0.14 -4.92 4.66 -19.88 -0.09 -5.02 16 13 C 0.11 3.56 4.50 85.55 0.39 3.94 16 14 N -0.53 -22.05 4.40 -905.37 -3.98 -26.03 16 15 C 0.18 8.54 3.64 85.55 0.31 8.85 16 16 C -0.51 -30.04 8.83 25.60 0.23 -29.81 16 17 H 0.04 2.36 7.50 -2.91 -0.02 2.34 16 18 C 0.01 0.42 5.47 84.65 0.46 0.89 16 19 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 20 Si 0.94 44.56 27.47 68.60 1.88 46.45 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 24 C 0.10 3.76 5.09 86.30 0.44 4.20 16 25 C -0.14 -4.52 5.61 -10.80 -0.06 -4.58 16 26 C -0.18 -5.71 10.18 30.62 0.31 -5.40 16 27 C -0.16 -4.13 10.25 30.62 0.31 -3.82 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 1.35 7.92 -2.39 -0.02 1.33 16 31 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.16 4.12 8.01 -2.91 -0.02 4.09 16 36 H 0.05 1.52 7.86 -2.38 -0.02 1.50 16 37 H 0.10 2.89 6.36 -2.39 -0.02 2.88 16 38 H -0.01 -0.46 7.18 -2.39 -0.02 -0.48 16 39 H 0.02 1.04 6.11 -2.39 -0.01 1.03 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.05 2.45 6.33 -2.39 -0.02 2.44 16 42 H 0.04 1.25 8.05 -2.39 -0.02 1.23 16 43 H 0.11 3.38 6.83 -2.38 -0.02 3.36 16 44 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 45 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 47 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -74.68 383.76 0.83 -73.84 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.90 Total: 23.82 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 5.34 Total: -23.99 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -6.42 Total: -109.01 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.87 Total: -11.11 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -74.68 0.83 -73.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.741 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds