Wall clock time and date at job start Tue Mar 31 2020 14:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99511 * 2 1 4 4 C 1.53001 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47208 * 67.26097 * 4 3 2 6 6 C 1.46901 * 110.99562 * 290.53234 * 5 4 3 7 7 C 1.50702 * 109.47055 * 299.81811 * 6 5 4 8 8 H 1.07996 * 120.00606 * 354.87869 * 7 6 5 9 9 C 1.37878 * 119.99693 * 174.87027 * 7 6 5 10 10 N 1.31513 * 120.00320 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99968 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46995 * 90.00359 * 11 9 7 13 13 H 1.48493 * 109.47255 * 210.00571 * 11 9 7 14 14 H 1.48501 * 109.46896 * 330.00616 * 11 9 7 15 15 C 1.46900 * 111.00015 * 54.48472 * 5 4 3 16 16 C 1.50698 * 109.47074 * 66.04727 * 15 5 4 17 17 C 1.38339 * 119.93917 * 270.02061 * 16 15 5 18 18 C 1.38301 * 120.24591 * 179.97438 * 17 16 15 19 19 C 1.38042 * 120.11905 * 0.02562 * 18 17 16 20 20 C 1.39317 * 119.87453 * 359.97438 * 19 18 17 21 21 C 1.48400 * 120.11979 * 180.27904 * 20 19 18 22 22 C 1.39769 * 120.53425 * 359.44113 * 21 20 19 23 23 C 1.38415 * 118.31138 * 179.73592 * 22 21 20 24 24 C 1.38313 * 119.28079 * 0.52049 * 23 22 21 25 25 N 1.31891 * 121.02782 * 359.74503 * 24 23 22 26 26 C 1.31742 * 121.85533 * 359.97438 * 25 24 23 27 27 C 1.37992 * 119.94004 * 89.99728 * 16 15 5 28 28 H 1.08996 * 109.47980 * 299.99980 * 1 2 3 29 29 H 1.09004 * 109.47711 * 60.00497 * 1 2 3 30 30 H 1.09003 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47259 * 59.99867 * 3 2 1 32 32 H 1.08998 * 109.47336 * 299.99587 * 3 2 1 33 33 H 1.09004 * 109.47336 * 307.25718 * 4 3 2 34 34 H 1.08998 * 109.46986 * 187.25736 * 4 3 2 35 35 H 1.08997 * 109.47792 * 59.82462 * 6 5 4 36 36 H 1.09000 * 109.47212 * 179.82366 * 6 5 4 37 37 H 0.97004 * 120.00012 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.47054 * 306.04435 * 15 5 4 39 39 H 1.08997 * 109.46614 * 186.05055 * 15 5 4 40 40 H 1.08007 * 119.88155 * 0.02562 * 17 16 15 41 41 H 1.07993 * 119.94313 * 180.02562 * 18 17 16 42 42 H 1.07998 * 120.06212 * 180.02562 * 19 18 17 43 43 H 1.08004 * 120.84152 * 0.02562 * 22 21 20 44 44 H 1.08001 * 120.35888 * 180.23667 * 23 22 21 45 45 H 1.08001 * 119.48293 * 179.76218 * 24 23 22 46 46 H 1.07991 * 119.70644 * 180.02562 * 26 25 24 47 47 H 1.08003 * 120.05767 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9818 0.6123 -1.2764 6 6 3.5911 -0.7997 -1.3854 7 6 4.2205 -1.5831 -0.2624 8 1 4.9132 -1.1004 0.4110 9 6 3.9118 -2.9164 -0.0946 10 7 3.0686 -3.5045 -0.9147 11 14 4.6914 -3.8875 1.2979 12 1 3.8349 -3.7929 2.5073 13 1 4.8241 -5.3106 0.8952 14 1 6.0350 -3.3306 1.5980 15 6 3.4664 1.3902 -2.4109 16 6 4.0837 2.7649 -2.3991 17 6 3.4656 3.7934 -1.7106 18 6 4.0268 5.0573 -1.6951 19 6 5.2077 5.2992 -2.3679 20 6 5.8344 4.2671 -3.0628 21 6 7.1072 4.5196 -3.7828 22 6 7.6832 5.7931 -3.7816 23 6 8.8739 5.9757 -4.4634 24 6 9.4445 4.9047 -5.1270 25 7 8.8744 3.7154 -5.1149 26 6 7.7444 3.4925 -4.4753 27 6 5.2646 2.9954 -3.0747 28 1 -0.3635 0.5138 0.8899 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6884 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8482 0.5361 0.8189 34 1 3.9779 2.1724 0.1305 35 1 2.5061 -0.8824 -1.3227 36 1 3.9312 -1.1980 -2.3414 37 1 2.8518 -4.4426 -0.7968 38 1 2.3829 1.4776 -2.3293 39 1 3.7209 0.8856 -3.3429 40 1 2.5418 3.6084 -1.1825 41 1 3.5404 5.8565 -1.1557 42 1 5.6453 6.2864 -2.3548 43 1 7.2136 6.6127 -3.2579 44 1 9.3498 6.9450 -4.4808 45 1 10.3715 5.0444 -5.6633 46 1 7.3082 2.5047 -4.4880 47 1 5.7463 2.1918 -3.6119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:51 Heat of formation + Delta-G solvation = 32.706479 kcal Electronic energy + Delta-G solvation = -27275.647418 eV Core-core repulsion = 23616.949957 eV Total energy + Delta-G solvation = -3658.697461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48832 -39.25305 -37.85106 -35.77569 -33.51882 -32.47897 -32.24961 -31.26884 -29.29962 -28.93400 -27.05404 -25.89310 -24.64922 -24.13574 -23.66009 -22.57574 -21.62048 -20.77461 -19.33363 -17.70818 -16.52092 -16.35738 -16.24250 -15.99739 -15.86639 -15.64790 -14.73540 -14.63139 -14.37039 -14.17614 -14.09227 -13.94623 -13.70967 -13.55998 -13.29281 -12.85699 -12.51936 -12.15439 -12.03383 -11.91496 -11.56611 -11.41881 -11.12340 -11.02485 -10.94227 -10.88486 -10.62845 -10.53955 -10.28307 -10.07212 -9.76549 -9.65595 -9.57486 -9.07272 -8.95313 -8.65594 -8.26694 -8.14206 -7.04928 -5.85992 -3.83432 0.48685 1.08299 1.48565 1.82193 3.40444 3.46197 3.50152 3.58247 4.01350 4.23205 4.41988 4.54458 4.55379 4.56743 4.72370 4.82279 4.94736 4.99464 5.13747 5.19173 5.29335 5.43438 5.50287 5.51590 5.56593 5.60036 5.66028 5.70772 5.80366 5.83971 5.88956 5.93513 5.95289 6.05080 6.13411 6.18891 6.22540 6.31701 6.44614 6.54286 6.58326 6.76858 6.84883 7.03355 7.38755 7.76030 7.83190 7.87196 7.91882 8.17032 8.34853 8.69872 9.21724 9.77521 11.25427 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.003179 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.577072 B = 8805.067840 C =10315.031045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.061 3.939 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.492 4.492 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.889 3.111 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.080 3.920 16 C -0.054 4.054 17 C -0.112 4.112 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.053 4.053 21 C -0.084 4.084 22 C -0.074 4.074 23 C -0.172 4.172 24 C 0.089 3.911 25 N -0.480 5.480 26 C 0.109 3.891 27 C -0.085 4.085 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.017 0.983 37 H 0.257 0.743 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 20.878 -4.618 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C -0.058 4.058 4 C -0.068 4.068 5 N -0.248 5.248 6 C 0.057 3.943 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.200 1.200 15 C -0.048 4.048 16 C -0.054 4.054 17 C -0.130 4.130 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.053 4.053 21 C -0.086 4.086 22 C -0.099 4.099 23 C -0.191 4.191 24 C -0.067 4.067 25 N -0.188 5.188 26 C -0.048 4.048 27 C -0.103 4.103 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.171 0.829 46 H 0.179 0.821 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.315 19.827 -5.132 20.747 hybrid contribution -1.185 0.372 1.343 1.829 sum 2.129 20.200 -3.789 20.662 Atomic orbital electron populations 1.22679 0.83723 1.02305 0.98244 1.88495 1.17312 1.25577 1.94549 1.23414 0.97665 0.86143 0.98534 1.22224 0.89296 0.99774 0.95492 1.62391 1.58154 1.05186 0.99044 1.20057 0.97226 0.80100 0.96881 1.21022 1.24881 0.94285 1.12861 0.92495 1.24860 0.95364 0.97717 0.96208 1.69956 1.34881 1.11381 1.37536 0.86642 0.79657 0.79242 0.82661 1.20983 1.21526 1.20025 1.21139 0.96485 0.90079 0.97050 1.19953 0.94564 0.95555 0.95366 1.21223 1.00142 0.92740 0.98917 1.20975 0.96005 0.96935 0.99855 1.21046 0.96004 0.98234 0.98235 1.18550 0.93581 0.94263 0.98936 1.19849 0.95513 0.94568 0.98690 1.21658 0.94797 0.96546 0.96924 1.22068 0.96794 1.00773 0.99500 1.22812 0.99215 0.88190 0.96517 1.67683 1.09905 1.23524 1.17704 1.23047 0.90650 0.99235 0.91893 1.21106 0.94904 0.95393 0.98937 0.95362 0.95316 0.89943 0.94668 0.94053 0.88660 0.91430 0.94410 0.96473 0.93367 0.94241 0.90483 0.86275 0.86157 0.86345 0.84711 0.84779 0.82872 0.82131 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.34 -7.09 7.57 -35.23 -0.27 -7.36 16 3 C 0.02 0.36 5.17 37.16 0.19 0.55 16 4 C 0.06 1.16 5.18 -3.82 -0.02 1.14 16 5 N -0.52 -10.93 4.74 -237.51 -1.13 -12.05 16 6 C 0.18 4.64 4.27 -4.97 -0.02 4.62 16 7 C -0.49 -13.76 8.22 -34.44 -0.28 -14.05 16 8 H 0.06 1.60 6.97 -52.49 -0.37 1.23 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.08 1.39 4.80 -4.98 -0.02 1.36 16 16 C -0.05 -0.79 4.88 -104.68 -0.51 -1.30 16 17 C -0.11 -1.44 8.03 -39.52 -0.32 -1.75 16 18 C -0.12 -1.33 10.03 -39.63 -0.40 -1.73 16 19 C -0.12 -1.29 9.44 -39.25 -0.37 -1.66 16 20 C -0.05 -0.66 5.88 -104.90 -0.62 -1.27 16 21 C -0.08 -1.00 5.89 -104.75 -0.62 -1.61 16 22 C -0.07 -0.71 9.54 -38.94 -0.37 -1.08 16 23 C -0.17 -1.47 10.10 -39.49 -0.40 -1.87 16 24 C 0.09 0.89 11.17 -17.50 -0.20 0.69 16 25 N -0.48 -6.16 10.35 -12.97 -0.13 -6.29 16 26 C 0.11 1.38 10.60 -17.20 -0.18 1.20 16 27 C -0.09 -1.19 9.09 -39.26 -0.36 -1.55 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.66 4.45 -51.93 -0.23 0.42 16 33 H 0.10 2.07 6.33 -51.93 -0.33 1.74 16 34 H 0.07 1.14 6.53 -51.93 -0.34 0.80 16 35 H 0.04 1.04 5.29 -51.93 -0.27 0.76 16 36 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 38 H 0.04 0.68 5.66 -51.93 -0.29 0.38 16 39 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 40 H 0.12 1.44 6.17 -52.48 -0.32 1.11 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.00 6.28 -52.49 -0.33 0.67 16 43 H 0.14 0.98 6.33 -52.48 -0.33 0.65 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.16 1.92 6.23 -52.49 -0.33 1.60 16 47 H 0.13 1.73 6.24 -52.48 -0.33 1.41 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -32.46 373.08 -10.06 -42.53 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.40 Total: 1.69 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -3.48 Total: -15.15 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.52 Total: -44.39 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.27 Total: -7.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.46 -10.06 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.234 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds