Wall clock time and date at job start Tue Mar 31 2020 14:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99511 * 2 1 4 4 C 1.53001 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47208 * 67.26097 * 4 3 2 6 6 C 1.46901 * 110.99562 * 290.53234 * 5 4 3 7 7 C 1.50702 * 109.47055 * 299.81811 * 6 5 4 8 8 H 1.07996 * 120.00606 * 354.87869 * 7 6 5 9 9 C 1.37878 * 119.99693 * 174.87027 * 7 6 5 10 10 N 1.31513 * 120.00320 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99968 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46995 * 90.00359 * 11 9 7 13 13 H 1.48493 * 109.47255 * 210.00571 * 11 9 7 14 14 H 1.48501 * 109.46896 * 330.00616 * 11 9 7 15 15 C 1.46900 * 111.00015 * 54.48472 * 5 4 3 16 16 C 1.50698 * 109.47074 * 66.04727 * 15 5 4 17 17 C 1.38339 * 119.93917 * 270.02061 * 16 15 5 18 18 C 1.38301 * 120.24591 * 179.97438 * 17 16 15 19 19 C 1.38042 * 120.11905 * 0.02562 * 18 17 16 20 20 C 1.39317 * 119.87453 * 359.97438 * 19 18 17 21 21 C 1.48400 * 120.11979 * 180.27904 * 20 19 18 22 22 C 1.39769 * 120.53425 * 359.44113 * 21 20 19 23 23 C 1.38415 * 118.31138 * 179.73592 * 22 21 20 24 24 C 1.38313 * 119.28079 * 0.52049 * 23 22 21 25 25 N 1.31891 * 121.02782 * 359.74503 * 24 23 22 26 26 C 1.31742 * 121.85533 * 359.97438 * 25 24 23 27 27 C 1.37992 * 119.94004 * 89.99728 * 16 15 5 28 28 H 1.08996 * 109.47980 * 299.99980 * 1 2 3 29 29 H 1.09004 * 109.47711 * 60.00497 * 1 2 3 30 30 H 1.09003 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47259 * 59.99867 * 3 2 1 32 32 H 1.08998 * 109.47336 * 299.99587 * 3 2 1 33 33 H 1.09004 * 109.47336 * 307.25718 * 4 3 2 34 34 H 1.08998 * 109.46986 * 187.25736 * 4 3 2 35 35 H 1.08997 * 109.47792 * 59.82462 * 6 5 4 36 36 H 1.09000 * 109.47212 * 179.82366 * 6 5 4 37 37 H 0.97004 * 120.00012 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.47054 * 306.04435 * 15 5 4 39 39 H 1.08997 * 109.46614 * 186.05055 * 15 5 4 40 40 H 1.08007 * 119.88155 * 0.02562 * 17 16 15 41 41 H 1.07993 * 119.94313 * 180.02562 * 18 17 16 42 42 H 1.07998 * 120.06212 * 180.02562 * 19 18 17 43 43 H 1.08004 * 120.84152 * 0.02562 * 22 21 20 44 44 H 1.08001 * 120.35888 * 180.23667 * 23 22 21 45 45 H 1.08001 * 119.48293 * 179.76218 * 24 23 22 46 46 H 1.07991 * 119.70644 * 180.02562 * 26 25 24 47 47 H 1.08003 * 120.05767 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9818 0.6123 -1.2764 6 6 3.5911 -0.7997 -1.3854 7 6 4.2205 -1.5831 -0.2624 8 1 4.9132 -1.1004 0.4110 9 6 3.9118 -2.9164 -0.0946 10 7 3.0686 -3.5045 -0.9147 11 14 4.6914 -3.8875 1.2979 12 1 3.8349 -3.7929 2.5073 13 1 4.8241 -5.3106 0.8952 14 1 6.0350 -3.3306 1.5980 15 6 3.4664 1.3902 -2.4109 16 6 4.0837 2.7649 -2.3991 17 6 3.4656 3.7934 -1.7106 18 6 4.0268 5.0573 -1.6951 19 6 5.2077 5.2992 -2.3679 20 6 5.8344 4.2671 -3.0628 21 6 7.1072 4.5196 -3.7828 22 6 7.6832 5.7931 -3.7816 23 6 8.8739 5.9757 -4.4634 24 6 9.4445 4.9047 -5.1270 25 7 8.8744 3.7154 -5.1149 26 6 7.7444 3.4925 -4.4753 27 6 5.2646 2.9954 -3.0747 28 1 -0.3635 0.5138 0.8899 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6884 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8482 0.5361 0.8189 34 1 3.9779 2.1724 0.1305 35 1 2.5061 -0.8824 -1.3227 36 1 3.9312 -1.1980 -2.3414 37 1 2.8518 -4.4426 -0.7968 38 1 2.3829 1.4776 -2.3293 39 1 3.7209 0.8856 -3.3429 40 1 2.5418 3.6084 -1.1825 41 1 3.5404 5.8565 -1.1557 42 1 5.6453 6.2864 -2.3548 43 1 7.2136 6.6127 -3.2579 44 1 9.3498 6.9450 -4.4808 45 1 10.3715 5.0444 -5.6633 46 1 7.3082 2.5047 -4.4880 47 1 5.7463 2.1918 -3.6119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:50 Heat of formation + Delta-G solvation = 12.620857 kcal Electronic energy + Delta-G solvation = -27276.518396 eV Core-core repulsion = 23616.949957 eV Total energy + Delta-G solvation = -3659.568439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35140 -40.38482 -39.15642 -37.27719 -34.84785 -34.15917 -33.04384 -32.42625 -30.69576 -30.03914 -28.75435 -27.24073 -26.15411 -24.99875 -24.65734 -24.28452 -22.55289 -22.04910 -20.72344 -18.56825 -18.33749 -17.60493 -17.49699 -17.15074 -16.97376 -16.75785 -16.48906 -15.92273 -15.74395 -15.58738 -15.11020 -14.97193 -14.77760 -14.58588 -14.34677 -14.12727 -13.70499 -13.60362 -13.49374 -13.05296 -12.92579 -12.83031 -12.74106 -12.62306 -12.49463 -12.41248 -12.05369 -12.00541 -11.76655 -11.57806 -11.14588 -11.07805 -10.56961 -10.44231 -10.39155 -10.28116 -9.68721 -9.07028 -8.73388 -8.06219 -6.10732 -0.36639 0.31848 0.50638 0.92893 1.41380 1.42430 1.52816 2.46782 2.69820 3.03869 3.11590 3.27933 3.42100 3.58755 3.69998 3.76790 3.96721 3.99906 4.05096 4.13655 4.19131 4.25782 4.35308 4.39742 4.44678 4.51933 4.54376 4.58679 4.61481 4.69077 4.78515 4.81655 4.84550 4.87326 5.08214 5.12067 5.14896 5.17285 5.23877 5.43886 5.55352 5.65033 5.70579 5.73046 5.77817 5.82166 6.08718 6.21216 6.42617 6.48915 6.77571 7.02624 7.04407 7.54510 9.04939 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.003179 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.577072 B = 8805.067840 C =10315.031045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.025 3.975 4 C 0.065 3.935 5 N -0.536 5.536 6 C 0.198 3.802 7 C -0.500 4.500 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.088 3.912 16 C -0.072 4.072 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.056 4.056 21 C -0.099 4.099 22 C -0.071 4.071 23 C -0.160 4.160 24 C 0.079 3.921 25 N -0.514 5.514 26 C 0.084 3.916 27 C -0.105 4.105 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.023 0.977 36 H -0.020 1.020 37 H 0.258 0.742 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.129 0.871 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.174 0.826 45 H 0.180 0.820 46 H 0.147 0.853 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 24.949 -3.330 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.308 6.308 3 C -0.053 4.053 4 C -0.063 4.063 5 N -0.259 5.259 6 C 0.073 3.927 7 C -0.539 4.539 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.781 3.219 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.040 4.040 16 C -0.072 4.072 17 C -0.136 4.136 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.056 4.056 21 C -0.101 4.101 22 C -0.097 4.097 23 C -0.179 4.179 24 C -0.078 4.078 25 N -0.222 5.222 26 C -0.073 4.073 27 C -0.124 4.124 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.040 0.960 36 H -0.002 1.002 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.146 0.854 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.183 0.817 44 H 0.192 0.808 45 H 0.197 0.803 46 H 0.164 0.836 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.803 23.919 -3.839 24.521 hybrid contribution -1.266 -0.756 0.862 1.708 sum 2.537 23.163 -2.977 23.491 Atomic orbital electron populations 1.22779 0.81746 1.02256 1.00279 1.88399 1.19707 1.27779 1.94943 1.23415 0.96013 0.85316 1.00555 1.22164 0.91124 0.99898 0.93146 1.62216 1.59073 1.03361 1.01229 1.19641 0.95862 0.82987 0.94211 1.21289 1.24587 0.94849 1.13157 0.93095 1.25673 0.95927 0.98813 0.98661 1.70086 1.36230 1.11654 1.39234 0.85609 0.78915 0.77703 0.79686 1.20208 1.21075 1.19437 1.21036 0.96711 0.91316 0.94891 1.19690 0.95432 0.94460 0.97636 1.21349 1.00475 0.93072 0.98663 1.21352 0.95691 0.96802 0.99111 1.21459 0.95623 0.99090 0.96600 1.18692 0.93924 0.93916 0.99111 1.19894 0.95553 0.95546 0.99146 1.22051 0.94967 0.96083 0.96575 1.22490 0.96053 1.01846 0.97556 1.23391 0.99991 0.87773 0.96600 1.67641 1.10355 1.25536 1.18710 1.22975 0.91459 0.99467 0.93390 1.21104 0.95234 0.96338 0.99690 0.92716 0.93704 0.91177 0.91827 0.92458 0.91863 0.88872 0.95956 1.00164 0.93336 0.93996 0.92188 0.85362 0.82659 0.82887 0.81662 0.80830 0.80309 0.83582 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -16.37 7.57 -148.98 -1.13 -17.50 16 3 C 0.02 0.83 5.17 71.98 0.37 1.20 16 4 C 0.06 2.49 5.18 86.30 0.45 2.93 16 5 N -0.54 -23.37 4.74 -905.35 -4.29 -27.66 16 6 C 0.20 10.78 4.27 85.56 0.37 11.14 16 7 C -0.50 -29.18 8.22 25.60 0.21 -28.97 16 8 H 0.05 2.96 6.97 -2.91 -0.02 2.94 16 9 C 0.01 0.39 5.46 84.66 0.46 0.85 16 10 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 11 Si 0.95 46.35 29.54 68.60 2.03 48.37 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 14 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 15 C 0.09 3.20 4.80 85.56 0.41 3.61 16 16 C -0.07 -2.13 4.88 -19.90 -0.10 -2.22 16 17 C -0.12 -2.77 8.03 22.31 0.18 -2.59 16 18 C -0.11 -2.04 10.03 22.24 0.22 -1.82 16 19 C -0.11 -2.02 9.44 22.48 0.21 -1.81 16 20 C -0.06 -1.33 5.88 -20.04 -0.12 -1.45 16 21 C -0.10 -2.26 5.89 -19.94 -0.12 -2.38 16 22 C -0.07 -1.14 9.54 22.68 0.22 -0.92 16 23 C -0.16 -2.17 10.10 22.33 0.23 -1.94 16 24 C 0.08 1.43 11.17 84.70 0.95 2.38 16 25 N -0.51 -13.35 10.35 -194.96 -2.02 -15.36 16 26 C 0.08 2.22 10.60 84.96 0.90 3.12 16 27 C -0.11 -3.06 9.09 22.48 0.20 -2.85 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.74 4.45 -2.39 -0.01 1.73 16 33 H 0.06 2.81 6.33 -2.38 -0.02 2.80 16 34 H 0.09 3.04 6.53 -2.39 -0.02 3.03 16 35 H 0.02 1.31 5.29 -2.39 -0.01 1.30 16 36 H -0.02 -1.18 8.05 -2.39 -0.02 -1.20 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.04 1.48 5.66 -2.38 -0.01 1.47 16 39 H 0.06 2.31 7.95 -2.39 -0.02 2.29 16 40 H 0.13 2.74 6.17 -2.91 -0.02 2.72 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.15 1.72 6.28 -2.91 -0.02 1.71 16 43 H 0.17 1.52 6.33 -2.91 -0.02 1.51 16 44 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.15 4.03 6.23 -2.91 -0.02 4.01 16 47 H 0.11 3.46 6.24 -2.91 -0.02 3.44 16 Total: -1.00 -74.75 373.08 2.15 -72.60 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.99 Total: 16.48 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 6.29 Total: -19.65 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -6.02 Total: -100.30 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -1.13 Total: -17.50 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -74.75 2.15 -72.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.217 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds