Wall clock time and date at job start Tue Mar 31 2020 14:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99716 * 2 1 4 4 C 1.50710 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99771 * 89.99988 * 4 3 2 6 6 C 1.38230 * 119.99720 * 179.97438 * 5 4 3 7 7 C 1.38236 * 120.00162 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00234 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47396 * 95.87884 * 8 7 6 10 10 C 1.46900 * 110.99695 * 287.92033 * 9 8 7 11 11 C 1.50701 * 109.47268 * 298.63290 * 10 9 8 12 12 H 1.08002 * 119.99748 * 5.06045 * 11 10 9 13 13 C 1.37870 * 120.00281 * 185.06007 * 11 10 9 14 14 N 1.31519 * 120.00326 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99988 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46753 * 90.00465 * 15 13 11 17 17 H 1.48502 * 109.47269 * 210.00345 * 15 13 11 18 18 H 1.48500 * 109.47141 * 330.00765 * 15 13 11 19 19 C 1.46901 * 110.99992 * 163.96527 * 9 8 7 20 20 C 1.50696 * 109.46977 * 189.99710 * 19 9 8 21 21 C 1.38226 * 119.61499 * 95.00103 * 20 19 9 22 22 C 1.38632 * 119.15941 * 180.02562 * 21 20 19 23 23 C 1.38672 * 118.42470 * 0.02562 * 22 21 20 24 24 C 1.38187 * 119.15615 * 0.27406 * 23 22 21 25 25 N 1.31852 * 119.62341 * 275.01886 * 20 19 9 26 26 C 1.38243 * 120.00036 * 0.25067 * 7 6 5 27 27 C 1.38232 * 119.99811 * 269.97670 * 4 3 2 28 28 H 1.09005 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47176 * 299.99580 * 1 2 3 30 30 H 1.08999 * 109.47918 * 59.99689 * 1 2 3 31 31 H 1.08998 * 109.47523 * 60.00524 * 3 2 1 32 32 H 1.09003 * 109.47479 * 300.00123 * 3 2 1 33 33 H 1.08002 * 120.00259 * 359.97438 * 5 4 3 34 34 H 1.08003 * 120.00190 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46899 * 335.87674 * 8 7 6 36 36 H 1.09007 * 109.46832 * 215.88054 * 8 7 6 37 37 H 1.08995 * 109.47365 * 58.63727 * 10 9 8 38 38 H 1.09006 * 109.46619 * 178.64080 * 10 9 8 39 39 H 0.96993 * 120.00347 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47132 * 70.00040 * 19 9 8 41 41 H 1.08997 * 109.46914 * 309.99712 * 19 9 8 42 42 H 1.07998 * 120.42508 * 0.04193 * 21 20 19 43 43 H 1.08007 * 120.78761 * 180.02562 * 22 21 20 44 44 H 1.07994 * 120.42570 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.61543 * 179.70149 * 24 23 22 46 46 H 1.07993 * 120.00156 * 179.73042 * 26 7 6 47 47 H 1.07996 * 120.00202 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2010 1.1322 -1.1981 6 6 5.5790 1.0236 -1.1987 7 6 6.2685 0.9688 -0.0018 8 6 7.7709 0.8498 -0.0024 9 7 8.3679 2.1845 0.1394 10 6 8.2063 2.9671 -1.0932 11 6 8.9130 2.2700 -2.2271 12 1 9.3603 1.2997 -2.0695 13 6 8.9884 2.8709 -3.4657 14 7 9.6047 2.2623 -4.4554 15 14 8.2141 4.5488 -3.7385 16 1 9.2107 5.6084 -3.4394 17 1 7.7748 4.6674 -5.1521 18 1 7.0414 4.7047 -2.8410 19 6 9.7832 2.0902 0.5215 20 6 10.2947 3.4575 0.8954 21 6 10.3012 3.8452 2.2221 22 6 10.7733 5.1053 2.5553 23 6 11.2227 5.9324 1.5370 24 6 11.1801 5.4783 0.2326 25 7 10.7306 4.2703 -0.0469 26 6 5.5795 1.0174 1.1957 27 6 4.2020 1.1322 1.1962 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6884 1.8465 -0.8900 33 1 3.6622 1.1745 -2.1332 34 1 6.1169 0.9807 -2.1342 35 1 8.0995 0.4026 -0.9405 36 1 8.0858 0.2205 0.8301 37 1 7.1461 3.0601 -1.3282 38 1 8.6357 3.9591 -0.9526 39 1 9.6575 2.6849 -5.3269 40 1 10.3611 1.7030 -0.3177 41 1 9.8854 1.4184 1.3738 42 1 9.9432 3.1748 2.9895 43 1 10.7906 5.4351 3.5837 44 1 11.5976 6.9203 1.7601 45 1 11.5237 6.1181 -0.5667 46 1 6.1179 0.9702 2.1307 47 1 3.6641 1.1746 2.1317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:25 Heat of formation + Delta-G solvation = 30.164934 kcal Electronic energy + Delta-G solvation = -27252.057379 eV Core-core repulsion = 23593.249709 eV Total energy + Delta-G solvation = -3658.807670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.84411 -39.26935 -37.73302 -36.49557 -32.58627 -32.38220 -31.94573 -30.91485 -30.50848 -28.21043 -27.53569 -26.27936 -24.82645 -23.47349 -23.04737 -22.32521 -21.88250 -20.54010 -19.49655 -17.07419 -16.47518 -16.37749 -16.16137 -15.96936 -15.80260 -15.29095 -15.00245 -14.76861 -14.66290 -14.17392 -13.99711 -13.86092 -13.14159 -13.05418 -12.97762 -12.69940 -12.39113 -12.27331 -12.19643 -12.07664 -11.58435 -11.47737 -11.26173 -11.12251 -11.03167 -10.75502 -10.53749 -10.46535 -10.19644 -9.88045 -9.78438 -9.52041 -9.40950 -8.81441 -8.65763 -8.49197 -8.41846 -8.24067 -7.21310 -5.99193 -3.95481 1.46147 1.63303 1.69160 1.86272 3.36614 3.42473 3.47716 3.72286 4.15091 4.36228 4.51564 4.76792 4.94267 4.99362 5.03803 5.14342 5.18420 5.22036 5.24737 5.30398 5.36674 5.38081 5.38647 5.46464 5.48815 5.49653 5.61024 5.85998 5.89939 5.96382 6.01776 6.07248 6.14040 6.31497 6.39286 6.47845 6.48411 6.61754 6.71108 6.80555 6.93216 7.01243 7.05751 7.08505 7.18884 7.27541 7.43851 7.64983 8.03373 8.04928 8.52782 8.57542 9.00842 9.66209 11.14055 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003714 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.669409 B = 7537.067279 C = 8985.608717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.107 3.893 4 C -0.107 4.107 5 C -0.104 4.104 6 C -0.101 4.101 7 C -0.048 4.048 8 C 0.090 3.910 9 N -0.523 5.523 10 C 0.152 3.848 11 C -0.530 4.530 12 H 0.073 0.927 13 C 0.081 3.919 14 N -0.902 5.902 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.268 1.268 19 C 0.101 3.899 20 C 0.157 3.843 21 C -0.164 4.164 22 C -0.085 4.085 23 C -0.188 4.188 24 C 0.096 3.904 25 N -0.449 5.449 26 C -0.108 4.108 27 C -0.108 4.108 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.148 0.852 46 H 0.119 0.881 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 0.966 13.812 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.048 4.048 8 C -0.038 4.038 9 N -0.247 5.247 10 C 0.025 3.975 11 C -0.569 4.569 12 H 0.091 0.909 13 C -0.121 4.121 14 N -0.541 5.541 15 Si 0.699 3.301 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.193 1.193 19 C -0.027 4.027 20 C 0.018 3.982 21 C -0.184 4.184 22 C -0.111 4.111 23 C -0.209 4.209 24 C -0.062 4.062 25 N -0.157 5.157 26 C -0.126 4.126 27 C -0.126 4.126 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.165 0.835 46 H 0.137 0.863 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.709 0.773 13.131 15.775 hybrid contribution -0.127 1.313 -0.127 1.325 sum -8.836 2.086 13.004 15.859 Atomic orbital electron populations 1.22732 0.81507 1.02604 0.99798 1.87999 1.19154 1.27905 1.95347 1.21330 0.90545 0.84648 1.00405 1.19413 0.93206 1.04206 0.93889 1.20978 0.94456 0.99753 0.96980 1.21330 0.93616 0.97992 0.98959 1.19890 0.95696 0.96571 0.92657 1.20998 0.89762 0.91381 1.01649 1.62532 1.12346 1.13764 1.36047 1.20265 0.96699 0.94382 0.86140 1.21438 1.35604 1.05567 0.94262 0.90942 1.24782 0.94491 0.96842 0.96023 1.69916 1.43378 1.38577 1.02221 0.86911 0.80330 0.85904 0.76906 1.20146 1.21763 1.19276 1.20886 0.90884 0.90520 1.00390 1.21249 0.92431 0.95925 0.88564 1.21932 1.01600 0.97207 0.97665 1.21452 0.96467 0.93884 0.99290 1.22046 1.03367 1.00909 0.94539 1.22820 0.95330 0.92850 0.95213 1.67773 1.07759 1.03381 1.36815 1.20944 0.93509 1.00393 0.97782 1.20858 0.94325 1.00640 0.96794 0.89744 0.94265 0.94169 0.92824 0.92719 0.86548 0.84809 0.91506 0.91756 0.95603 0.94671 0.92968 0.90995 0.91186 0.85271 0.85604 0.85624 0.83454 0.86290 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -5.06 10.69 -35.23 -0.38 -5.43 16 3 C 0.11 1.33 6.06 36.01 0.22 1.55 16 4 C -0.11 -1.61 5.51 -104.62 -0.58 -2.19 16 5 C -0.10 -1.70 9.70 -39.59 -0.38 -2.09 16 6 C -0.10 -1.85 8.50 -39.58 -0.34 -2.18 16 7 C -0.05 -0.84 4.90 -104.62 -0.51 -1.36 16 8 C 0.09 1.65 4.95 -4.98 -0.02 1.62 16 9 N -0.52 -10.51 4.65 -238.96 -1.11 -11.62 16 10 C 0.15 3.63 3.72 -4.98 -0.02 3.61 16 11 C -0.53 -14.31 7.89 -34.44 -0.27 -14.58 16 12 H 0.07 2.11 6.20 -52.49 -0.33 1.78 16 13 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 14 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 15 Si 0.87 22.19 27.37 -169.99 -4.65 17.53 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.27 -6.70 6.69 56.52 0.38 -6.32 16 19 C 0.10 1.90 5.09 -4.98 -0.03 1.88 16 20 C 0.16 2.88 5.70 -82.59 -0.47 2.41 16 21 C -0.16 -2.43 9.72 -39.44 -0.38 -2.82 16 22 C -0.08 -1.11 10.18 -39.28 -0.40 -1.51 16 23 C -0.19 -2.56 10.11 -39.44 -0.40 -2.96 16 24 C 0.10 1.61 11.18 -17.55 -0.20 1.41 16 25 N -0.45 -9.14 8.78 -9.48 -0.08 -9.22 16 26 C -0.11 -1.68 9.73 -39.58 -0.38 -2.06 16 27 C -0.11 -1.58 9.70 -39.58 -0.38 -1.96 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.13 2.69 8.06 -52.48 -0.42 2.26 16 35 H 0.07 1.39 6.08 -51.93 -0.32 1.08 16 36 H 0.06 1.01 7.79 -51.92 -0.40 0.60 16 37 H 0.03 0.65 5.99 -51.93 -0.31 0.34 16 38 H 0.04 0.90 5.35 -51.93 -0.28 0.62 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.07 1.57 6.57 -51.93 -0.34 1.23 16 41 H 0.07 1.07 7.76 -51.93 -0.40 0.67 16 42 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 46 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 47 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -32.58 384.56 -10.22 -42.80 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.03 Total: 4.37 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -3.53 Total: -17.64 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.42 Total: -47.43 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.65 Total: 17.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.58 -10.22 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.964 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds