Wall clock time and date at job start Tue Mar 31 2020 14:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99716 * 2 1 4 4 C 1.50710 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99771 * 89.99988 * 4 3 2 6 6 C 1.38230 * 119.99720 * 179.97438 * 5 4 3 7 7 C 1.38236 * 120.00162 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00234 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47396 * 95.87884 * 8 7 6 10 10 C 1.46900 * 110.99695 * 287.92033 * 9 8 7 11 11 C 1.50701 * 109.47268 * 298.63290 * 10 9 8 12 12 H 1.08002 * 119.99748 * 5.06045 * 11 10 9 13 13 C 1.37870 * 120.00281 * 185.06007 * 11 10 9 14 14 N 1.31519 * 120.00326 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99988 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46753 * 90.00465 * 15 13 11 17 17 H 1.48502 * 109.47269 * 210.00345 * 15 13 11 18 18 H 1.48500 * 109.47141 * 330.00765 * 15 13 11 19 19 C 1.46901 * 110.99992 * 163.96527 * 9 8 7 20 20 C 1.50696 * 109.46977 * 189.99710 * 19 9 8 21 21 C 1.38226 * 119.61499 * 95.00103 * 20 19 9 22 22 C 1.38632 * 119.15941 * 180.02562 * 21 20 19 23 23 C 1.38672 * 118.42470 * 0.02562 * 22 21 20 24 24 C 1.38187 * 119.15615 * 0.27406 * 23 22 21 25 25 N 1.31852 * 119.62341 * 275.01886 * 20 19 9 26 26 C 1.38243 * 120.00036 * 0.25067 * 7 6 5 27 27 C 1.38232 * 119.99811 * 269.97670 * 4 3 2 28 28 H 1.09005 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47176 * 299.99580 * 1 2 3 30 30 H 1.08999 * 109.47918 * 59.99689 * 1 2 3 31 31 H 1.08998 * 109.47523 * 60.00524 * 3 2 1 32 32 H 1.09003 * 109.47479 * 300.00123 * 3 2 1 33 33 H 1.08002 * 120.00259 * 359.97438 * 5 4 3 34 34 H 1.08003 * 120.00190 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46899 * 335.87674 * 8 7 6 36 36 H 1.09007 * 109.46832 * 215.88054 * 8 7 6 37 37 H 1.08995 * 109.47365 * 58.63727 * 10 9 8 38 38 H 1.09006 * 109.46619 * 178.64080 * 10 9 8 39 39 H 0.96993 * 120.00347 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47132 * 70.00040 * 19 9 8 41 41 H 1.08997 * 109.46914 * 309.99712 * 19 9 8 42 42 H 1.07998 * 120.42508 * 0.04193 * 21 20 19 43 43 H 1.08007 * 120.78761 * 180.02562 * 22 21 20 44 44 H 1.07994 * 120.42570 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.61543 * 179.70149 * 24 23 22 46 46 H 1.07993 * 120.00156 * 179.73042 * 26 7 6 47 47 H 1.07996 * 120.00202 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2010 1.1322 -1.1981 6 6 5.5790 1.0236 -1.1987 7 6 6.2685 0.9688 -0.0018 8 6 7.7709 0.8498 -0.0024 9 7 8.3679 2.1845 0.1394 10 6 8.2063 2.9671 -1.0932 11 6 8.9130 2.2700 -2.2271 12 1 9.3603 1.2997 -2.0695 13 6 8.9884 2.8709 -3.4657 14 7 9.6047 2.2623 -4.4554 15 14 8.2141 4.5488 -3.7385 16 1 9.2107 5.6084 -3.4394 17 1 7.7748 4.6674 -5.1521 18 1 7.0414 4.7047 -2.8410 19 6 9.7832 2.0902 0.5215 20 6 10.2947 3.4575 0.8954 21 6 10.3012 3.8452 2.2221 22 6 10.7733 5.1053 2.5553 23 6 11.2227 5.9324 1.5370 24 6 11.1801 5.4783 0.2326 25 7 10.7306 4.2703 -0.0469 26 6 5.5795 1.0174 1.1957 27 6 4.2020 1.1322 1.1962 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6884 1.8465 -0.8900 33 1 3.6622 1.1745 -2.1332 34 1 6.1169 0.9807 -2.1342 35 1 8.0995 0.4026 -0.9405 36 1 8.0858 0.2205 0.8301 37 1 7.1461 3.0601 -1.3282 38 1 8.6357 3.9591 -0.9526 39 1 9.6575 2.6849 -5.3269 40 1 10.3611 1.7030 -0.3177 41 1 9.8854 1.4184 1.3738 42 1 9.9432 3.1748 2.9895 43 1 10.7906 5.4351 3.5837 44 1 11.5976 6.9203 1.7601 45 1 11.5237 6.1181 -0.5667 46 1 6.1179 0.9702 2.1307 47 1 3.6641 1.1746 2.1317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:24 Heat of formation + Delta-G solvation = 9.168998 kcal Electronic energy + Delta-G solvation = -27252.967831 eV Core-core repulsion = 23593.249709 eV Total energy + Delta-G solvation = -3659.718122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10343 -40.48448 -38.81618 -37.91502 -34.55083 -33.77597 -33.13581 -32.25364 -31.76621 -29.88238 -28.86234 -27.25046 -26.17412 -25.04865 -24.23374 -23.58513 -23.25137 -21.84785 -21.13312 -19.11842 -17.62966 -17.40466 -17.20378 -17.07607 -16.98727 -16.62053 -16.53123 -16.09792 -15.99676 -15.92740 -15.39116 -15.07846 -14.54922 -14.31044 -14.29422 -14.21708 -13.87511 -13.41597 -13.36108 -13.21606 -13.17889 -12.87452 -12.78459 -12.64325 -12.33365 -12.24156 -12.22503 -11.86853 -11.72297 -11.69228 -11.63894 -10.74123 -10.62403 -10.62174 -10.06860 -9.87304 -9.72505 -9.52114 -8.95360 -8.25018 -6.22764 0.26388 0.41458 0.56385 0.59531 1.28699 1.30437 1.39956 2.35262 2.63927 2.95114 3.13506 3.25291 3.49536 3.72923 3.91420 3.95327 3.96551 4.11409 4.14781 4.20352 4.28627 4.34521 4.39517 4.44159 4.55078 4.57380 4.58369 4.61871 4.69902 4.75828 4.84249 4.88067 4.91875 4.95992 5.05636 5.14919 5.17121 5.20069 5.26136 5.36638 5.39810 5.55803 5.56621 5.69844 5.86756 5.95194 6.11292 6.16255 6.24920 6.36317 6.38935 6.78239 7.34993 7.41267 8.91808 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003714 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.669409 B = 7537.067279 C = 8985.608717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.108 3.892 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.067 4.067 8 C 0.094 3.906 9 N -0.512 5.512 10 C 0.171 3.829 11 C -0.509 4.509 12 H 0.037 0.963 13 C 0.024 3.976 14 N -0.948 5.948 15 Si 0.929 3.071 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.260 1.260 19 C 0.105 3.895 20 C 0.122 3.878 21 C -0.156 4.156 22 C -0.077 4.077 23 C -0.172 4.172 24 C 0.067 3.933 25 N -0.507 5.507 26 C -0.103 4.103 27 C -0.103 4.103 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.097 0.903 37 H 0.014 0.986 38 H 0.026 0.974 39 H 0.261 0.739 40 H 0.026 0.974 41 H 0.108 0.892 42 H 0.158 0.842 43 H 0.171 0.829 44 H 0.164 0.836 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 2.725 18.140 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.032 3.968 4 C -0.108 4.108 5 C -0.132 4.132 6 C -0.145 4.145 7 C -0.067 4.067 8 C -0.033 4.033 9 N -0.235 5.235 10 C 0.044 3.956 11 C -0.548 4.548 12 H 0.056 0.944 13 C -0.173 4.173 14 N -0.590 5.590 15 Si 0.755 3.245 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.184 1.184 19 C -0.024 4.024 20 C -0.015 4.015 21 C -0.176 4.176 22 C -0.103 4.103 23 C -0.192 4.192 24 C -0.090 4.090 25 N -0.217 5.217 26 C -0.122 4.122 27 C -0.121 4.121 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.045 0.955 36 H 0.115 0.885 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.126 0.874 42 H 0.176 0.824 43 H 0.189 0.811 44 H 0.181 0.819 45 H 0.168 0.832 46 H 0.163 0.837 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.692 2.530 17.478 20.645 hybrid contribution 0.485 0.694 -1.371 1.611 sum -10.207 3.224 16.107 19.339 Atomic orbital electron populations 1.22946 0.79398 1.03793 1.01038 1.87944 1.21481 1.28190 1.95612 1.21354 0.88576 0.84884 1.01979 1.19788 0.95071 1.02561 0.93341 1.21103 0.93624 1.00063 0.98413 1.21167 0.94738 1.00551 0.98066 1.19870 0.95046 0.98328 0.93484 1.20990 0.90714 0.90717 1.00920 1.62524 1.13517 1.14261 1.33210 1.19888 0.94978 0.94134 0.86624 1.21597 1.33978 1.04019 0.95251 0.94445 1.25529 0.95431 1.00378 0.96006 1.70051 1.45796 1.40408 1.02771 0.85983 0.79712 0.81788 0.77033 1.19768 1.21179 1.18436 1.20931 0.89066 0.92380 0.99979 1.21226 0.94562 0.95577 0.90175 1.22192 1.00565 0.98527 0.96353 1.21979 0.94398 0.92658 1.01231 1.22417 1.01361 1.02361 0.93046 1.23064 0.96435 0.92211 0.97330 1.67587 1.09772 1.05300 1.39071 1.21183 0.94196 0.99258 0.97524 1.21260 0.94013 0.98829 0.97952 0.88703 0.92564 0.93340 0.90413 0.92006 0.85922 0.88428 0.95471 0.88524 0.96759 0.95604 0.93035 0.95609 0.87432 0.82428 0.81109 0.81877 0.83215 0.83742 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.84 10.69 -148.98 -1.59 -11.43 16 3 C 0.11 2.38 6.06 71.24 0.43 2.82 16 4 C -0.11 -3.03 5.51 -19.86 -0.11 -3.14 16 5 C -0.11 -3.79 9.70 22.27 0.22 -3.58 16 6 C -0.13 -4.91 8.50 22.27 0.19 -4.72 16 7 C -0.07 -2.39 4.90 -19.86 -0.10 -2.49 16 8 C 0.09 3.57 4.95 85.56 0.42 3.99 16 9 N -0.51 -20.98 4.65 -909.94 -4.23 -25.21 16 10 C 0.17 8.55 3.72 85.56 0.32 8.86 16 11 C -0.51 -29.48 7.89 25.60 0.20 -29.28 16 12 H 0.04 2.39 6.20 -2.91 -0.02 2.37 16 13 C 0.02 1.43 5.47 84.65 0.46 1.90 16 14 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 15 Si 0.93 47.69 27.37 68.60 1.88 49.56 16 16 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 17 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 18 H -0.26 -12.88 6.69 99.48 0.67 -12.21 16 19 C 0.10 4.01 5.09 85.56 0.44 4.44 16 20 C 0.12 4.47 5.70 42.55 0.24 4.71 16 21 C -0.16 -4.16 9.72 22.36 0.22 -3.95 16 22 C -0.08 -1.67 10.18 22.47 0.23 -1.44 16 23 C -0.17 -4.11 10.11 22.36 0.23 -3.89 16 24 C 0.07 2.21 11.18 84.67 0.95 3.16 16 25 N -0.51 -21.16 8.78 -183.89 -1.61 -22.77 16 26 C -0.10 -2.98 9.73 22.27 0.22 -2.76 16 27 C -0.10 -2.68 9.70 22.27 0.22 -2.46 16 28 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 34 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.03 1.24 6.08 -2.39 -0.01 1.22 16 36 H 0.10 2.97 7.79 -2.38 -0.02 2.96 16 37 H 0.01 0.75 5.99 -2.39 -0.01 0.74 16 38 H 0.03 1.36 5.35 -2.38 -0.01 1.35 16 39 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.03 1.21 6.57 -2.39 -0.02 1.20 16 41 H 0.11 3.19 7.76 -2.39 -0.02 3.17 16 42 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 43 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 44 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 46 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 47 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -77.37 384.56 1.67 -75.70 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.91 Total: 21.12 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 6.01 Total: -26.21 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -5.54 Total: -108.74 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.59 Total: -11.43 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.88 Total: 49.56 kcal Total: -77.37 1.67 -75.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.873 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds