Wall clock time and date at job start Tue Mar 31 2020 14:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38138 * 120.03578 * 2 1 4 4 C 1.38250 * 120.07162 * 180.27369 * 3 2 1 5 5 C 1.50700 * 119.93666 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47091 * 269.98245 * 5 4 3 7 7 C 1.36928 * 120.00064 * 90.00031 * 6 5 4 8 8 H 1.08003 * 120.00208 * 219.39896 * 7 6 5 9 9 C 1.38815 * 119.99929 * 39.40632 * 7 6 5 10 10 N 1.31619 * 120.00153 * 19.30845 * 9 7 6 11 11 Si 1.86804 * 119.99927 * 199.31077 * 9 7 6 12 12 H 1.48501 * 109.47093 * 89.99459 * 11 9 7 13 13 H 1.48499 * 109.47165 * 209.99748 * 11 9 7 14 14 H 1.48507 * 109.47119 * 329.99897 * 11 9 7 15 15 C 1.46502 * 119.99611 * 269.99465 * 6 5 4 16 16 C 1.54267 * 110.03313 * 235.21547 * 15 6 5 17 17 C 1.54962 * 104.16424 * 217.13941 * 16 15 6 18 18 C 1.54889 * 102.77465 * 37.88938 * 17 16 15 19 19 C 1.53879 * 110.02975 * 118.00312 * 15 6 5 20 20 C 1.38304 * 120.12954 * 0.02562 * 4 3 2 21 21 C 1.38097 * 120.07052 * 359.97438 * 20 4 3 22 22 C 1.38819 * 120.03193 * 180.27588 * 2 1 3 23 23 N 1.40203 * 120.06704 * 359.69919 * 22 2 1 24 24 C 1.34722 * 126.83941 * 133.78717 * 23 22 2 25 25 N 1.30852 * 108.03385 * 180.02562 * 24 23 22 26 26 C 1.33264 * 109.84077 * 0.02562 * 25 24 23 27 27 N 1.30753 * 108.99974 * 359.71047 * 26 25 24 28 28 H 1.09004 * 109.46908 * 264.76744 * 1 2 3 29 29 H 1.08996 * 109.47022 * 24.77243 * 1 2 3 30 30 H 1.08999 * 109.46944 * 144.77249 * 1 2 3 31 31 H 1.08002 * 119.96197 * 0.25134 * 3 2 1 32 32 H 1.08993 * 109.46660 * 29.98318 * 5 4 3 33 33 H 1.08999 * 109.46608 * 149.98242 * 5 4 3 34 34 H 0.97001 * 119.99663 * 184.99608 * 10 9 7 35 35 H 1.08999 * 110.02065 * 356.61597 * 15 6 5 36 36 H 1.08997 * 110.48820 * 335.79225 * 16 15 6 37 37 H 1.09003 * 110.48513 * 98.43078 * 16 15 6 38 38 H 1.09001 * 110.72396 * 279.58273 * 17 16 15 39 39 H 1.08998 * 110.92477 * 156.29705 * 17 16 15 40 40 H 1.08996 * 110.49128 * 203.40389 * 18 17 16 41 41 H 1.09001 * 110.59802 * 80.81697 * 18 17 16 42 42 H 1.08999 * 110.03432 * 238.56870 * 19 15 6 43 43 H 1.09004 * 110.03006 * 359.95470 * 19 15 6 44 44 H 1.08006 * 119.96750 * 179.97438 * 20 4 3 45 45 H 1.07993 * 120.03878 * 180.02562 * 21 20 4 46 46 H 1.08000 * 125.98391 * 0.02562 * 24 23 22 47 47 H 1.07996 * 125.49822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1959 0.0000 4 6 3.5810 1.1967 -0.0057 5 6 4.3322 2.5032 -0.0051 6 7 4.5703 2.9302 -1.3861 7 6 3.6536 3.7209 -2.0259 8 1 3.4272 3.5504 -3.0681 9 6 3.0152 4.7418 -1.3351 10 7 3.5332 5.2038 -0.2168 11 14 1.4210 5.4599 -1.9926 12 1 0.2708 4.7018 -1.4380 13 1 1.3160 6.8848 -1.5881 14 1 1.4089 5.3638 -3.4745 15 6 5.7893 2.5113 -2.0824 16 6 6.5479 3.7468 -2.6095 17 6 7.1185 3.2874 -3.9750 18 6 5.9786 2.4062 -4.5435 19 6 5.4277 1.6589 -3.3115 20 6 4.2759 0.0010 -0.0120 21 6 3.5904 -1.1978 -0.0120 22 6 2.2018 -1.2018 -0.0058 23 7 1.5029 -2.4172 -0.0053 24 6 1.7435 -3.4877 -0.7871 25 7 0.8740 -4.4164 -0.4810 26 6 0.0665 -3.9795 0.4849 27 7 0.4155 -2.7630 0.8136 28 1 -0.3633 -0.0937 1.0234 29 1 -0.3633 0.9331 -0.4306 30 1 -0.3633 -0.8395 -0.5928 31 1 1.6584 2.1312 0.0041 32 1 3.7438 3.2603 0.5130 33 1 5.2868 2.3730 0.5047 34 1 3.0515 5.8655 0.3037 35 1 6.4274 1.9411 -1.4074 36 1 5.8645 4.5852 -2.7444 37 1 7.3555 4.0174 -1.9293 38 1 8.0269 2.7013 -3.8360 39 1 7.3073 4.1416 -4.6253 40 1 6.3711 1.6993 -5.2744 41 1 5.2023 3.0259 -4.9924 42 1 5.8911 0.6754 -3.2333 43 1 4.3453 1.5563 -3.3893 44 1 5.3560 0.0048 -0.0169 45 1 4.1335 -2.1312 -0.0165 46 1 2.5183 -3.5656 -1.5354 47 1 -0.7426 -4.5412 0.9278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093563127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:17 Heat of formation + Delta-G solvation = 129.167559 kcal Electronic energy + Delta-G solvation = -28111.579103 eV Core-core repulsion = 24489.357260 eV Total energy + Delta-G solvation = -3622.221843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21157 -39.22698 -37.72989 -34.98071 -33.53606 -32.52197 -31.37292 -31.05165 -29.71272 -27.90010 -26.82491 -26.72876 -25.77544 -23.42899 -22.42116 -21.99364 -21.21710 -20.00535 -19.95623 -19.15283 -17.95694 -16.46941 -16.07281 -15.57998 -15.46769 -14.80546 -14.70065 -14.47818 -14.25603 -14.11275 -13.73515 -13.53792 -13.31332 -12.97835 -12.88516 -12.59479 -12.39232 -12.20301 -11.70420 -11.55477 -11.33466 -11.19915 -10.98552 -10.78977 -10.57224 -10.50116 -10.40566 -10.32554 -10.17869 -10.10009 -10.06026 -9.96477 -9.91852 -9.81081 -9.58402 -8.58664 -8.45435 -8.03278 -6.70197 -5.88731 -3.52332 1.11352 1.68282 1.96484 2.38047 2.90557 3.27131 3.36902 3.37996 3.97983 4.26448 4.38917 4.74831 4.96596 4.98728 5.16009 5.16808 5.28634 5.37438 5.39727 5.47785 5.68119 5.70428 5.71937 5.85925 5.88393 5.94079 6.06401 6.10659 6.22394 6.23840 6.25380 6.30050 6.38316 6.43423 6.47904 6.53446 6.54537 6.59080 6.63380 6.77598 6.79563 6.90584 6.99040 7.11665 7.19095 7.31286 7.35859 7.51641 7.73594 8.03198 8.41769 9.05914 9.67061 10.25904 11.07225 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.004122 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.163098 B = 6791.421375 C = 8079.646982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.065 4.065 3 C -0.088 4.088 4 C -0.050 4.050 5 C 0.171 3.829 6 N -0.566 5.566 7 C -0.245 4.245 8 H 0.061 0.939 9 C 0.016 3.984 10 N -0.880 5.880 11 Si 0.887 3.113 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.172 3.828 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.111 4.111 21 C -0.113 4.113 22 C 0.094 3.906 23 N -0.312 5.312 24 C 0.256 3.744 25 N -0.549 5.549 26 C 0.188 3.812 27 N -0.310 5.310 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.255 0.745 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.217 0.783 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -11.037 -0.730 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.067 4.067 3 C -0.107 4.107 4 C -0.054 4.054 5 C 0.045 3.955 6 N -0.284 5.284 7 C -0.375 4.375 8 H 0.079 0.921 9 C -0.185 4.185 10 N -0.522 5.522 11 Si 0.716 3.284 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.202 1.202 15 C 0.065 3.935 16 C -0.167 4.167 17 C -0.162 4.162 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.003 3.997 23 N -0.096 5.096 24 C -0.040 4.040 25 N -0.276 5.276 26 C -0.115 4.115 27 N -0.137 5.137 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.142 0.858 45 H 0.137 0.863 46 H 0.234 0.766 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.519 -10.681 -0.244 10.696 hybrid contribution -0.742 0.276 -0.492 0.932 sum -0.222 -10.405 -0.737 10.433 Atomic orbital electron populations 1.20683 0.90943 1.01977 1.02460 1.19780 0.96228 0.91464 0.99185 1.20966 0.94194 0.96477 0.99067 1.21487 0.94220 0.97949 0.91751 1.20098 0.96955 0.90278 0.88189 1.43853 1.18160 1.55273 1.11077 1.18914 1.16040 1.06429 0.96102 0.92126 1.25167 0.99792 0.95259 0.98279 1.70034 1.35978 1.29622 1.16547 0.86539 0.84400 0.78330 0.79116 1.21206 1.21656 1.20176 1.21074 0.87560 0.92808 0.92041 1.22747 0.98947 1.00784 0.94191 1.22449 0.97263 0.98567 0.97911 1.22247 0.97855 0.98139 0.97294 1.22618 1.01384 0.97460 0.95846 1.20878 0.99669 0.91094 1.01449 1.20811 0.91018 0.99001 1.02548 1.17148 0.90005 0.81565 1.10972 1.47588 1.23671 1.11894 1.26440 1.26142 0.98914 0.82937 0.95972 1.70569 1.08230 1.30613 1.18170 1.26038 0.99732 0.91111 0.94610 1.78217 1.03014 1.16407 1.16050 0.90820 0.91530 0.92502 0.85095 0.87841 0.94399 0.93467 0.93432 0.89501 0.93533 0.92871 0.92828 0.93453 0.92048 0.93834 0.91242 0.85844 0.86275 0.76634 0.76765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 8.87 36.01 0.32 -1.28 16 2 C -0.06 -1.08 5.90 -104.44 -0.62 -1.70 16 3 C -0.09 -1.60 9.33 -39.61 -0.37 -1.97 16 4 C -0.05 -0.91 5.46 -104.59 -0.57 -1.48 16 5 C 0.17 3.50 5.40 -5.20 -0.03 3.47 16 6 N -0.57 -12.14 2.33 -165.75 -0.39 -12.52 16 7 C -0.25 -5.87 7.54 -15.06 -0.11 -5.98 16 8 H 0.06 1.51 7.37 -52.48 -0.39 1.12 16 9 C 0.02 0.39 4.99 -17.43 -0.09 0.31 16 10 N -0.88 -22.87 11.47 55.49 0.64 -22.23 16 11 Si 0.89 20.06 29.60 -169.99 -5.03 15.02 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.17 3.23 3.42 -66.81 -0.23 3.00 16 16 C -0.13 -2.37 6.41 -25.03 -0.16 -2.53 16 17 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 18 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 19 C -0.13 -2.29 6.21 -25.61 -0.16 -2.45 16 20 C -0.11 -1.72 9.69 -39.61 -0.38 -2.10 16 21 C -0.11 -1.61 9.64 -39.40 -0.38 -1.99 16 22 C 0.09 1.46 6.29 -83.58 -0.53 0.94 16 23 N -0.31 -4.57 3.15 -11.80 -0.04 -4.61 16 24 C 0.26 3.24 12.30 -90.37 -1.11 2.13 16 25 N -0.55 -7.38 11.19 -15.75 -0.18 -7.56 16 26 C 0.19 2.38 13.03 -91.76 -1.20 1.18 16 27 N -0.31 -4.62 11.05 29.30 0.32 -4.30 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 30 H 0.06 0.88 7.18 -51.93 -0.37 0.51 16 31 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.10 2.43 5.51 -51.93 -0.29 2.15 16 33 H 0.04 0.74 7.85 -51.93 -0.41 0.33 16 34 H 0.26 6.51 8.32 -40.82 -0.34 6.17 16 35 H 0.05 0.84 7.81 -51.93 -0.41 0.44 16 36 H 0.09 1.91 6.93 -51.93 -0.36 1.55 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.34 7.18 -51.93 -0.37 0.97 16 44 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 45 H 0.12 1.39 8.02 -52.49 -0.42 0.96 16 46 H 0.22 1.92 8.06 -52.49 -0.42 1.50 16 47 H 0.22 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -27.15 381.75 -12.09 -39.24 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.22 Total: 5.75 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -5.95 Total: -14.55 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.36 Total: -51.22 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.15 -12.09 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.404 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds