Wall clock time and date at job start Tue Mar 31 2020 14:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38138 * 120.03578 * 2 1 4 4 C 1.38250 * 120.07162 * 180.27369 * 3 2 1 5 5 C 1.50700 * 119.93666 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47091 * 269.98245 * 5 4 3 7 7 C 1.36928 * 120.00064 * 90.00031 * 6 5 4 8 8 H 1.08003 * 120.00208 * 219.39896 * 7 6 5 9 9 C 1.38815 * 119.99929 * 39.40632 * 7 6 5 10 10 N 1.31619 * 120.00153 * 19.30845 * 9 7 6 11 11 Si 1.86804 * 119.99927 * 199.31077 * 9 7 6 12 12 H 1.48501 * 109.47093 * 89.99459 * 11 9 7 13 13 H 1.48499 * 109.47165 * 209.99748 * 11 9 7 14 14 H 1.48507 * 109.47119 * 329.99897 * 11 9 7 15 15 C 1.46502 * 119.99611 * 269.99465 * 6 5 4 16 16 C 1.54267 * 110.03313 * 235.21547 * 15 6 5 17 17 C 1.54962 * 104.16424 * 217.13941 * 16 15 6 18 18 C 1.54889 * 102.77465 * 37.88938 * 17 16 15 19 19 C 1.53879 * 110.02975 * 118.00312 * 15 6 5 20 20 C 1.38304 * 120.12954 * 0.02562 * 4 3 2 21 21 C 1.38097 * 120.07052 * 359.97438 * 20 4 3 22 22 C 1.38819 * 120.03193 * 180.27588 * 2 1 3 23 23 N 1.40203 * 120.06704 * 359.69919 * 22 2 1 24 24 C 1.34722 * 126.83941 * 133.78717 * 23 22 2 25 25 N 1.30852 * 108.03385 * 180.02562 * 24 23 22 26 26 C 1.33264 * 109.84077 * 0.02562 * 25 24 23 27 27 N 1.30753 * 108.99974 * 359.71047 * 26 25 24 28 28 H 1.09004 * 109.46908 * 264.76744 * 1 2 3 29 29 H 1.08996 * 109.47022 * 24.77243 * 1 2 3 30 30 H 1.08999 * 109.46944 * 144.77249 * 1 2 3 31 31 H 1.08002 * 119.96197 * 0.25134 * 3 2 1 32 32 H 1.08993 * 109.46660 * 29.98318 * 5 4 3 33 33 H 1.08999 * 109.46608 * 149.98242 * 5 4 3 34 34 H 0.97001 * 119.99663 * 184.99608 * 10 9 7 35 35 H 1.08999 * 110.02065 * 356.61597 * 15 6 5 36 36 H 1.08997 * 110.48820 * 335.79225 * 16 15 6 37 37 H 1.09003 * 110.48513 * 98.43078 * 16 15 6 38 38 H 1.09001 * 110.72396 * 279.58273 * 17 16 15 39 39 H 1.08998 * 110.92477 * 156.29705 * 17 16 15 40 40 H 1.08996 * 110.49128 * 203.40389 * 18 17 16 41 41 H 1.09001 * 110.59802 * 80.81697 * 18 17 16 42 42 H 1.08999 * 110.03432 * 238.56870 * 19 15 6 43 43 H 1.09004 * 110.03006 * 359.95470 * 19 15 6 44 44 H 1.08006 * 119.96750 * 179.97438 * 20 4 3 45 45 H 1.07993 * 120.03878 * 180.02562 * 21 20 4 46 46 H 1.08000 * 125.98391 * 0.02562 * 24 23 22 47 47 H 1.07996 * 125.49822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1959 0.0000 4 6 3.5810 1.1967 -0.0057 5 6 4.3322 2.5032 -0.0051 6 7 4.5703 2.9302 -1.3861 7 6 3.6536 3.7209 -2.0259 8 1 3.4272 3.5504 -3.0681 9 6 3.0152 4.7418 -1.3351 10 7 3.5332 5.2038 -0.2168 11 14 1.4210 5.4599 -1.9926 12 1 0.2708 4.7018 -1.4380 13 1 1.3160 6.8848 -1.5881 14 1 1.4089 5.3638 -3.4745 15 6 5.7893 2.5113 -2.0824 16 6 6.5479 3.7468 -2.6095 17 6 7.1185 3.2874 -3.9750 18 6 5.9786 2.4062 -4.5435 19 6 5.4277 1.6589 -3.3115 20 6 4.2759 0.0010 -0.0120 21 6 3.5904 -1.1978 -0.0120 22 6 2.2018 -1.2018 -0.0058 23 7 1.5029 -2.4172 -0.0053 24 6 1.7435 -3.4877 -0.7871 25 7 0.8740 -4.4164 -0.4810 26 6 0.0665 -3.9795 0.4849 27 7 0.4155 -2.7630 0.8136 28 1 -0.3633 -0.0937 1.0234 29 1 -0.3633 0.9331 -0.4306 30 1 -0.3633 -0.8395 -0.5928 31 1 1.6584 2.1312 0.0041 32 1 3.7438 3.2603 0.5130 33 1 5.2868 2.3730 0.5047 34 1 3.0515 5.8655 0.3037 35 1 6.4274 1.9411 -1.4074 36 1 5.8645 4.5852 -2.7444 37 1 7.3555 4.0174 -1.9293 38 1 8.0269 2.7013 -3.8360 39 1 7.3073 4.1416 -4.6253 40 1 6.3711 1.6993 -5.2744 41 1 5.2023 3.0259 -4.9924 42 1 5.8911 0.6754 -3.2333 43 1 4.3453 1.5563 -3.3893 44 1 5.3560 0.0048 -0.0169 45 1 4.1335 -2.1312 -0.0165 46 1 2.5183 -3.5656 -1.5354 47 1 -0.7426 -4.5412 0.9278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093563127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:16 Heat of formation + Delta-G solvation = 120.814365 kcal Electronic energy + Delta-G solvation = -28111.941325 eV Core-core repulsion = 24489.357260 eV Total energy + Delta-G solvation = -3622.584065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.23352 -40.52478 -39.16947 -36.41203 -34.91705 -33.77372 -32.93339 -32.21989 -31.01247 -29.28103 -28.24122 -28.10870 -27.30492 -24.81441 -23.64409 -23.25447 -22.32520 -21.33877 -21.26364 -20.69558 -19.08054 -18.19228 -17.34031 -16.99822 -16.52422 -16.34196 -16.02034 -15.87498 -15.66178 -15.23195 -15.07852 -14.81621 -14.61625 -14.53184 -14.15330 -13.99083 -13.56712 -13.48099 -13.21485 -13.06480 -12.82420 -12.74816 -12.62125 -12.24731 -12.15677 -11.95836 -11.84384 -11.72417 -11.68118 -11.60871 -11.30604 -11.24402 -11.10082 -11.08155 -10.84632 -10.44931 -9.73611 -9.30243 -8.49581 -7.74257 -5.41405 -0.05106 0.41258 0.86701 1.31852 1.41275 1.47084 1.51177 1.94331 2.50479 2.70342 3.29785 3.43563 3.70901 3.78243 3.79644 3.92093 4.03421 4.04912 4.07191 4.19699 4.36618 4.41167 4.49123 4.60291 4.62306 4.68136 4.75306 4.78885 4.83632 4.95746 4.99782 5.00549 5.03974 5.12680 5.21008 5.24523 5.28271 5.37235 5.38479 5.44939 5.48210 5.56583 5.61479 5.71570 5.75181 5.80235 5.84298 5.94471 6.16135 6.55425 7.03799 7.23310 7.92489 8.44303 9.16313 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.004122 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.163098 B = 6791.421375 C = 8079.646982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.078 4.078 3 C -0.103 4.103 4 C -0.064 4.064 5 C 0.176 3.824 6 N -0.577 5.577 7 C -0.230 4.230 8 H 0.048 0.952 9 C -0.024 4.024 10 N -0.909 5.909 11 Si 0.928 3.072 12 H -0.287 1.287 13 H -0.298 1.298 14 H -0.275 1.275 15 C 0.165 3.835 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.125 4.125 20 C -0.103 4.103 21 C -0.098 4.098 22 C 0.101 3.899 23 N -0.327 5.327 24 C 0.264 3.736 25 N -0.564 5.564 26 C 0.195 3.805 27 N -0.344 5.344 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.248 0.752 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.146 0.854 45 H 0.157 0.843 46 H 0.253 0.747 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -14.468 -1.735 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.123 4.123 4 C -0.068 4.068 5 C 0.051 3.949 6 N -0.296 5.296 7 C -0.361 4.361 8 H 0.065 0.935 9 C -0.221 4.221 10 N -0.553 5.553 11 Si 0.758 3.242 12 H -0.214 1.214 13 H -0.225 1.225 14 H -0.200 1.200 15 C 0.059 3.941 16 C -0.168 4.168 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.164 4.164 20 C -0.122 4.122 21 C -0.118 4.118 22 C 0.010 3.990 23 N -0.112 5.112 24 C -0.031 4.031 25 N -0.291 5.291 26 C -0.107 4.107 27 N -0.170 5.170 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.164 0.836 45 H 0.175 0.825 46 H 0.268 0.732 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.941 -14.142 -1.261 14.330 hybrid contribution -1.196 1.171 -0.167 1.682 sum 0.745 -12.970 -1.428 13.070 Atomic orbital electron populations 1.20583 0.90454 1.01618 1.02431 1.19846 0.96763 0.91614 0.99727 1.20764 0.94552 0.96133 1.00860 1.21189 0.93927 0.97858 0.93779 1.19863 0.96894 0.90770 0.87416 1.43980 1.18914 1.55452 1.11212 1.18863 1.15831 1.05901 0.95490 0.93481 1.25550 1.01723 0.96070 0.98785 1.70127 1.36758 1.30745 1.17659 0.85884 0.82549 0.77249 0.78568 1.21434 1.22457 1.19999 1.21291 0.86705 0.93235 0.92886 1.22675 0.98253 0.99348 0.96533 1.22398 0.97907 0.99061 0.95668 1.22235 0.97437 0.98360 0.97263 1.22493 0.99855 0.98554 0.95491 1.21033 1.00703 0.90279 1.00219 1.21115 0.90436 0.99931 1.00364 1.17244 0.90687 0.81596 1.09456 1.47579 1.24179 1.11944 1.27463 1.26926 0.98916 0.81771 0.95456 1.70646 1.08816 1.31004 1.18629 1.26750 0.99729 0.90536 0.93732 1.78206 1.03787 1.17664 1.17377 0.90702 0.92012 0.92525 0.87956 0.91369 0.93721 0.94235 0.91844 0.93762 0.93428 0.90200 0.92153 0.90507 0.94008 0.91166 0.93994 0.83591 0.82541 0.73159 0.73587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.92 8.87 71.24 0.63 -2.29 16 2 C -0.08 -2.58 5.90 -19.75 -0.12 -2.70 16 3 C -0.10 -3.91 9.33 22.25 0.21 -3.70 16 4 C -0.06 -2.32 5.46 -19.85 -0.11 -2.43 16 5 C 0.18 7.43 5.40 85.63 0.46 7.89 16 6 N -0.58 -25.26 2.33 -678.33 -1.58 -26.83 16 7 C -0.23 -11.46 7.54 84.04 0.63 -10.83 16 8 H 0.05 2.45 7.37 -2.91 -0.02 2.43 16 9 C -0.02 -1.23 4.99 84.86 0.42 -0.80 16 10 N -0.91 -49.81 11.47 21.65 0.25 -49.57 16 11 Si 0.93 43.13 29.60 68.60 2.03 45.16 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 C 0.16 6.02 3.42 45.72 0.16 6.18 16 16 C -0.13 -4.74 6.41 31.69 0.20 -4.53 16 17 C -0.11 -3.20 6.91 31.91 0.22 -2.98 16 18 C -0.12 -3.36 6.83 31.67 0.22 -3.14 16 19 C -0.12 -4.01 6.21 31.32 0.19 -3.82 16 20 C -0.10 -2.92 9.69 22.25 0.22 -2.70 16 21 C -0.10 -2.44 9.64 22.38 0.22 -2.23 16 22 C 0.10 2.94 6.29 38.09 0.24 3.18 16 23 N -0.33 -8.73 3.15 -191.25 -0.60 -9.34 16 24 C 0.26 5.73 12.30 180.26 2.22 7.95 16 25 N -0.56 -13.39 11.19 -203.73 -2.28 -15.67 16 26 C 0.19 4.42 13.03 180.75 2.35 6.78 16 27 N -0.34 -9.57 11.05 -61.21 -0.68 -10.25 16 28 H 0.07 2.26 8.14 -2.38 -0.02 2.25 16 29 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 30 H 0.06 1.73 7.18 -2.39 -0.02 1.71 16 31 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 32 H 0.07 3.40 5.51 -2.39 -0.01 3.39 16 33 H 0.04 1.76 7.85 -2.39 -0.02 1.74 16 34 H 0.25 13.42 8.32 -92.71 -0.77 12.65 16 35 H 0.06 2.10 7.81 -2.39 -0.02 2.08 16 36 H 0.04 2.00 6.93 -2.39 -0.02 1.98 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.04 1.58 7.18 -2.38 -0.02 1.57 16 44 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 45 H 0.16 2.76 8.02 -2.91 -0.02 2.74 16 46 H 0.25 3.25 8.06 -2.91 -0.02 3.22 16 47 H 0.25 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -61.85 381.75 6.46 -55.39 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.95 Total: 21.29 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 8.37 Total: -10.18 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -4.89 Total: -111.65 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -61.85 6.46 -55.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.204 kcal (2) G-P(sol) polarization free energy of solvation -61.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds