Wall clock time and date at job start Tue Mar 31 2020 14:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00006 * 2 1 4 4 H 1.48497 * 109.46849 * 269.99958 * 3 2 1 5 5 H 1.48495 * 109.47105 * 29.99863 * 3 2 1 6 6 H 1.48497 * 109.47124 * 150.00199 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99541 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99988 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46893 * 180.02562 * 9 7 2 11 11 C 1.46958 * 111.00154 * 169.99973 * 10 9 7 12 12 C 1.53046 * 109.36888 * 183.18142 * 11 10 9 13 13 N 1.46956 * 109.36628 * 301.60227 * 12 11 10 14 14 C 1.46895 * 111.00144 * 183.18742 * 13 12 11 15 15 C 1.50697 * 109.47351 * 169.99866 * 14 13 12 16 16 C 1.39919 * 126.03837 * 90.02113 * 15 14 13 17 17 N 1.30871 * 108.24846 * 180.02562 * 16 15 14 18 18 N 1.40086 * 108.21544 * 359.97438 * 17 16 15 19 19 C 1.40186 * 126.05195 * 179.97438 * 18 17 16 20 20 C 1.38840 * 120.06677 * 0.02833 * 19 18 17 21 21 C 1.38111 * 119.93312 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.06839 * 359.97364 * 21 20 19 23 23 C 1.38285 * 120.13065 * 0.02562 * 22 21 20 24 24 C 1.38118 * 120.06851 * 359.97438 * 23 22 21 25 25 C 1.35224 * 107.89536 * 0.24431 * 18 17 16 26 26 C 1.46958 * 110.88007 * 59.31412 * 13 12 11 27 27 C 1.46962 * 110.99787 * 293.79316 * 10 9 7 28 28 H 0.97001 * 119.99901 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47543 * 59.99901 * 9 7 2 30 30 H 1.09004 * 109.47177 * 299.99567 * 9 7 2 31 31 H 1.09003 * 109.49206 * 63.21099 * 11 10 9 32 32 H 1.09000 * 109.48732 * 303.15421 * 11 10 9 33 33 H 1.08991 * 109.49227 * 181.62913 * 12 11 10 34 34 H 1.09006 * 109.48375 * 61.56153 * 12 11 10 35 35 H 1.09002 * 109.47574 * 49.99027 * 14 13 12 36 36 H 1.09006 * 109.46817 * 289.99582 * 14 13 12 37 37 H 1.08005 * 125.87223 * 359.96310 * 16 15 14 38 38 H 1.08001 * 120.02977 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.96908 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.93476 * 179.74802 * 22 21 20 41 41 H 1.07997 * 119.95989 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.03188 * 180.02562 * 24 23 22 43 43 H 1.08001 * 126.14318 * 179.74067 * 25 18 17 44 44 H 1.08996 * 109.48852 * 60.65363 * 26 13 12 45 45 H 1.08998 * 109.48291 * 180.71425 * 26 13 12 46 46 H 1.08999 * 109.49116 * 296.78234 * 27 10 9 47 47 H 1.09005 * 109.48592 * 56.84474 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4506 -2.6252 -0.2367 12 6 5.9070 -4.0843 -0.3083 13 7 5.5600 -4.7656 0.9467 14 6 6.0497 -6.1505 0.9467 15 6 5.8971 -6.7373 2.3263 16 6 4.7781 -7.4245 2.8095 17 7 5.0177 -7.7797 4.0461 18 7 6.2990 -7.3300 4.3904 19 6 6.9307 -7.5083 5.6291 20 6 6.2792 -8.1856 6.6511 21 6 6.9043 -8.3601 7.8702 22 6 8.1781 -7.8616 8.0733 23 6 8.8295 -7.1866 7.0573 24 6 8.2095 -7.0089 5.8360 25 6 6.8162 -6.6883 3.3184 26 6 4.1105 -4.7194 1.1844 27 6 3.6543 -3.2603 1.2561 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 5.9692 -2.1217 0.5792 32 1 5.6809 -2.1255 -1.1776 33 1 6.9863 -4.1210 -0.4557 34 1 5.4088 -4.5806 -1.1412 35 1 7.1013 -6.1642 0.6603 36 1 5.4717 -6.7402 0.2351 37 1 3.8721 -7.6261 2.2572 38 1 5.2845 -8.5755 6.4929 39 1 6.3979 -8.8865 8.6657 40 1 8.6633 -7.9957 9.0287 41 1 9.8244 -6.7988 7.2188 42 1 8.7190 -6.4820 5.0427 43 1 7.7888 -6.2221 3.2632 44 1 3.5920 -5.2230 0.3685 45 1 3.8804 -5.2191 2.1253 46 1 4.1524 -2.7641 2.0890 47 1 2.5749 -3.2236 1.4035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105903361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:42 Heat of formation + Delta-G solvation = 131.002565 kcal Electronic energy + Delta-G solvation = -26666.038379 eV Core-core repulsion = 23043.896107 eV Total energy + Delta-G solvation = -3622.142271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78300 -39.36353 -38.64532 -35.42327 -33.71106 -32.47710 -31.63010 -30.87791 -30.43948 -29.57635 -28.32250 -26.05345 -24.03752 -23.58021 -23.15647 -22.53588 -21.06532 -20.91609 -20.03636 -19.16159 -18.31069 -16.78116 -16.50302 -15.98570 -15.57480 -15.32242 -15.11337 -14.73897 -14.38691 -14.32528 -14.27675 -14.13390 -13.90137 -13.59100 -13.39423 -13.05475 -12.97860 -12.64991 -12.34546 -12.05597 -11.93642 -11.77470 -11.57075 -11.41127 -10.93241 -10.85293 -10.74503 -10.53794 -10.49418 -10.32485 -10.03673 -9.80754 -9.42950 -9.25075 -9.18623 -8.55143 -8.29372 -8.05001 -7.33024 -6.03548 -4.00654 0.53671 0.92506 1.95564 2.16627 2.54250 3.29773 3.37158 3.39783 3.41998 4.15099 4.25391 4.43300 4.43756 4.57398 4.60580 4.75128 4.81507 4.95159 5.01895 5.08406 5.13655 5.28835 5.31856 5.33420 5.41579 5.55239 5.59013 5.60000 5.72834 5.84917 5.89025 5.93347 5.93720 5.99430 6.06215 6.08238 6.16340 6.34019 6.35394 6.44697 6.54866 6.68409 6.87105 6.94661 7.00368 7.24746 7.31067 7.44463 7.62277 7.94357 8.08581 8.68221 9.04640 9.58428 11.09563 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002354 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.027361 B =11891.702909 C =12340.195874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.062 3.938 13 N -0.538 5.538 14 C 0.131 3.869 15 C -0.210 4.210 16 C 0.069 3.931 17 N -0.291 5.291 18 N -0.328 5.328 19 C 0.168 3.832 20 C -0.123 4.123 21 C -0.095 4.095 22 C -0.135 4.135 23 C -0.092 4.092 24 C -0.144 4.144 25 C 0.070 3.930 26 C 0.060 3.940 27 C 0.068 3.932 28 H 0.263 0.737 29 H -0.012 1.012 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.188 0.812 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.176 0.824 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.027 0.973 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.622 -17.771 11.248 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.066 4.066 13 N -0.263 5.263 14 C 0.002 3.998 15 C -0.220 4.220 16 C -0.119 4.119 17 N -0.109 5.109 18 N -0.103 5.103 19 C 0.076 3.924 20 C -0.143 4.143 21 C -0.114 4.114 22 C -0.154 4.154 23 C -0.111 4.111 24 C -0.165 4.165 25 C -0.072 4.072 26 C -0.068 4.068 27 C -0.061 4.061 28 H 0.073 0.927 29 H 0.006 0.994 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.205 0.795 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.193 0.807 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.028 -18.236 12.310 29.089 hybrid contribution 0.632 1.517 -0.763 1.813 sum 19.661 -16.718 11.547 28.273 Atomic orbital electron populations 1.69894 1.06114 1.26805 1.51185 1.24904 0.94738 0.98856 0.94884 0.86861 0.80328 0.84032 0.78551 1.20165 1.21237 1.19275 1.21032 0.88748 0.94677 1.50183 0.90183 1.20149 0.97036 0.84179 0.95018 1.62118 1.10351 1.18988 1.33915 1.22109 0.90238 0.94848 1.00319 1.22127 0.99395 0.94974 0.90135 1.62216 1.15188 1.14195 1.34673 1.20283 1.00382 0.88353 0.90766 1.20028 0.95189 1.08444 0.98370 1.24040 0.99268 0.96553 0.92019 1.77430 0.94992 1.22803 1.15692 1.45757 1.12611 1.42756 1.09194 1.17589 0.92163 0.99384 0.83311 1.20932 1.01157 0.99982 0.92212 1.21085 0.94990 0.98882 0.96439 1.21227 0.95395 0.99254 0.99498 1.20977 0.99956 0.98005 0.92164 1.20849 0.93418 1.02980 0.99226 1.22318 1.00615 0.97723 0.86575 1.22235 0.86342 0.97906 1.00343 1.22017 1.01674 0.91860 0.90543 0.92694 0.99398 0.95859 0.95211 0.91035 0.91149 0.94097 0.90407 0.93810 0.79510 0.84474 0.85136 0.85503 0.85051 0.85193 0.80694 0.94178 0.90985 0.95503 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.56 9.03 -34.44 -0.31 -14.87 16 8 H 0.08 2.49 7.37 -52.48 -0.39 2.10 16 9 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 10 N -0.53 -11.24 4.70 -235.91 -1.11 -12.35 16 11 C 0.05 0.93 5.61 -3.77 -0.02 0.91 16 12 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 13 N -0.54 -7.55 4.70 -235.92 -1.11 -8.66 16 14 C 0.13 1.45 5.45 -4.98 -0.03 1.42 16 15 C -0.21 -2.41 4.96 -105.03 -0.52 -2.93 16 16 C 0.07 0.83 10.55 -17.33 -0.18 0.64 16 17 N -0.29 -3.89 11.87 30.64 0.36 -3.52 16 18 N -0.33 -3.99 3.80 -10.70 -0.04 -4.03 16 19 C 0.17 1.81 6.69 -83.59 -0.56 1.25 16 20 C -0.12 -1.22 9.66 -39.41 -0.38 -1.61 16 21 C -0.10 -0.73 10.04 -39.61 -0.40 -1.12 16 22 C -0.14 -0.90 10.04 -39.55 -0.40 -1.30 16 23 C -0.09 -0.64 10.04 -39.61 -0.40 -1.03 16 24 C -0.14 -1.22 9.46 -39.40 -0.37 -1.59 16 25 C 0.07 0.77 10.71 -17.10 -0.18 0.59 16 26 C 0.06 0.95 5.38 -3.77 -0.02 0.93 16 27 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 30 H 0.02 0.57 7.45 -51.93 -0.39 0.19 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.17 8.07 -51.93 -0.42 0.76 16 33 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.73 8.03 -51.93 -0.42 0.32 16 36 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.14 1.42 7.70 -52.49 -0.40 1.02 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.88 6.74 -52.49 -0.35 0.53 16 43 H 0.18 1.43 7.04 -52.49 -0.37 1.06 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.09 6.15 -51.93 -0.32 0.77 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 2.00 6.79 -51.93 -0.35 1.64 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.33 376.97 -11.21 -44.54 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.17 Total: -1.02 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.93 Total: -10.68 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -1.12 Total: -55.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.33 -11.21 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105903361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.547 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds