Wall clock time and date at job start Tue Mar 31 2020 14:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00006 * 2 1 4 4 H 1.48497 * 109.46849 * 269.99958 * 3 2 1 5 5 H 1.48495 * 109.47105 * 29.99863 * 3 2 1 6 6 H 1.48497 * 109.47124 * 150.00199 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99541 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99988 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46893 * 180.02562 * 9 7 2 11 11 C 1.46958 * 111.00154 * 169.99973 * 10 9 7 12 12 C 1.53046 * 109.36888 * 183.18142 * 11 10 9 13 13 N 1.46956 * 109.36628 * 301.60227 * 12 11 10 14 14 C 1.46895 * 111.00144 * 183.18742 * 13 12 11 15 15 C 1.50697 * 109.47351 * 169.99866 * 14 13 12 16 16 C 1.39919 * 126.03837 * 90.02113 * 15 14 13 17 17 N 1.30871 * 108.24846 * 180.02562 * 16 15 14 18 18 N 1.40086 * 108.21544 * 359.97438 * 17 16 15 19 19 C 1.40186 * 126.05195 * 179.97438 * 18 17 16 20 20 C 1.38840 * 120.06677 * 0.02833 * 19 18 17 21 21 C 1.38111 * 119.93312 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.06839 * 359.97364 * 21 20 19 23 23 C 1.38285 * 120.13065 * 0.02562 * 22 21 20 24 24 C 1.38118 * 120.06851 * 359.97438 * 23 22 21 25 25 C 1.35224 * 107.89536 * 0.24431 * 18 17 16 26 26 C 1.46958 * 110.88007 * 59.31412 * 13 12 11 27 27 C 1.46962 * 110.99787 * 293.79316 * 10 9 7 28 28 H 0.97001 * 119.99901 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47543 * 59.99901 * 9 7 2 30 30 H 1.09004 * 109.47177 * 299.99567 * 9 7 2 31 31 H 1.09003 * 109.49206 * 63.21099 * 11 10 9 32 32 H 1.09000 * 109.48732 * 303.15421 * 11 10 9 33 33 H 1.08991 * 109.49227 * 181.62913 * 12 11 10 34 34 H 1.09006 * 109.48375 * 61.56153 * 12 11 10 35 35 H 1.09002 * 109.47574 * 49.99027 * 14 13 12 36 36 H 1.09006 * 109.46817 * 289.99582 * 14 13 12 37 37 H 1.08005 * 125.87223 * 359.96310 * 16 15 14 38 38 H 1.08001 * 120.02977 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.96908 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.93476 * 179.74802 * 22 21 20 41 41 H 1.07997 * 119.95989 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.03188 * 180.02562 * 24 23 22 43 43 H 1.08001 * 126.14318 * 179.74067 * 25 18 17 44 44 H 1.08996 * 109.48852 * 60.65363 * 26 13 12 45 45 H 1.08998 * 109.48291 * 180.71425 * 26 13 12 46 46 H 1.08999 * 109.49116 * 296.78234 * 27 10 9 47 47 H 1.09005 * 109.48592 * 56.84474 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4506 -2.6252 -0.2367 12 6 5.9070 -4.0843 -0.3083 13 7 5.5600 -4.7656 0.9467 14 6 6.0497 -6.1505 0.9467 15 6 5.8971 -6.7373 2.3263 16 6 4.7781 -7.4245 2.8095 17 7 5.0177 -7.7797 4.0461 18 7 6.2990 -7.3300 4.3904 19 6 6.9307 -7.5083 5.6291 20 6 6.2792 -8.1856 6.6511 21 6 6.9043 -8.3601 7.8702 22 6 8.1781 -7.8616 8.0733 23 6 8.8295 -7.1866 7.0573 24 6 8.2095 -7.0089 5.8360 25 6 6.8162 -6.6883 3.3184 26 6 4.1105 -4.7194 1.1844 27 6 3.6543 -3.2603 1.2561 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 5.9692 -2.1217 0.5792 32 1 5.6809 -2.1255 -1.1776 33 1 6.9863 -4.1210 -0.4557 34 1 5.4088 -4.5806 -1.1412 35 1 7.1013 -6.1642 0.6603 36 1 5.4717 -6.7402 0.2351 37 1 3.8721 -7.6261 2.2572 38 1 5.2845 -8.5755 6.4929 39 1 6.3979 -8.8865 8.6657 40 1 8.6633 -7.9957 9.0287 41 1 9.8244 -6.7988 7.2188 42 1 8.7190 -6.4820 5.0427 43 1 7.7888 -6.2221 3.2632 44 1 3.5920 -5.2230 0.3685 45 1 3.8804 -5.2191 2.1253 46 1 4.1524 -2.7641 2.0890 47 1 2.5749 -3.2236 1.4035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105903361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:41 Heat of formation + Delta-G solvation = 108.807459 kcal Electronic energy + Delta-G solvation = -26667.000831 eV Core-core repulsion = 23043.896107 eV Total energy + Delta-G solvation = -3623.104723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.60731 -40.20485 -39.77780 -36.83203 -34.77385 -34.30243 -32.43350 -31.87778 -31.71536 -30.50412 -29.79068 -27.41168 -25.16647 -24.72498 -24.11120 -23.46436 -22.79242 -21.72864 -20.87631 -20.55015 -19.04389 -18.95173 -17.27565 -17.08836 -16.48068 -16.27466 -16.15835 -16.04742 -15.82567 -15.66427 -15.34889 -15.11966 -15.00640 -14.80750 -14.51840 -14.40795 -13.94503 -13.71333 -13.63526 -13.50986 -13.08620 -12.83685 -12.71649 -12.55933 -12.34606 -12.18479 -12.12861 -11.99368 -11.83454 -11.61164 -11.41463 -11.35976 -11.24458 -10.78696 -10.03543 -10.01151 -9.28531 -9.04061 -8.92788 -8.29235 -6.32704 -0.14718 0.33301 1.20493 1.33634 1.35543 1.40848 1.46346 1.65968 2.33670 2.80375 3.03438 3.15352 3.24347 3.42547 3.79827 3.93782 3.96284 4.04047 4.16126 4.21128 4.24239 4.31421 4.34029 4.39102 4.43396 4.52381 4.55617 4.68055 4.71698 4.73426 4.81549 4.84206 4.92634 4.98813 5.01821 5.03210 5.08442 5.16596 5.21155 5.28694 5.38243 5.50428 5.52330 5.60319 5.80436 5.94648 6.10103 6.20804 6.22525 6.38067 6.59486 6.66482 6.73208 7.30929 8.87398 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002354 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.027361 B =11891.702909 C =12340.195874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.036 0.964 9 C 0.173 3.827 10 N -0.543 5.543 11 C 0.050 3.950 12 C 0.068 3.932 13 N -0.542 5.542 14 C 0.137 3.863 15 C -0.223 4.223 16 C 0.058 3.942 17 N -0.327 5.327 18 N -0.332 5.332 19 C 0.134 3.866 20 C -0.145 4.145 21 C -0.100 4.100 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.147 4.147 25 C 0.072 3.928 26 C 0.076 3.924 27 C 0.072 3.928 28 H 0.267 0.733 29 H -0.018 1.018 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.198 0.802 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.147 0.853 43 H 0.205 0.795 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.798 -17.460 11.687 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.045 3.955 10 N -0.268 5.268 11 C -0.078 4.078 12 C -0.060 4.060 13 N -0.267 5.267 14 C 0.010 3.990 15 C -0.234 4.234 16 C -0.129 4.129 17 N -0.146 5.146 18 N -0.108 5.108 19 C 0.042 3.958 20 C -0.165 4.165 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.110 4.110 24 C -0.168 4.168 25 C -0.070 4.070 26 C -0.052 4.052 27 C -0.057 4.057 28 H 0.076 0.924 29 H 0.000 1.000 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.214 0.786 38 H 0.138 0.862 39 H 0.167 0.833 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.222 0.778 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.035 0.965 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 23.227 -17.960 12.754 32.012 hybrid contribution -0.654 1.307 -0.788 1.661 sum 22.573 -16.653 11.966 30.497 Atomic orbital electron populations 1.70053 1.08118 1.28120 1.52593 1.25872 0.95645 1.03217 0.94351 0.85686 0.79179 0.78507 0.79394 1.18614 1.20744 1.17798 1.21253 0.91096 0.93217 1.49887 0.94538 1.19909 0.94239 0.86493 0.94826 1.62042 1.13507 1.16861 1.34407 1.22274 0.87206 0.97639 1.00664 1.22130 1.01488 0.92452 0.89886 1.62196 1.13192 1.16424 1.34904 1.20327 1.01809 0.86289 0.90607 1.20123 0.95205 1.09111 0.98922 1.24327 1.00044 0.96599 0.91895 1.77374 0.96406 1.24265 1.16537 1.45934 1.12251 1.42611 1.09984 1.17988 0.93448 1.01218 0.83170 1.20998 1.00949 1.01044 0.93492 1.21365 0.95666 0.98840 0.95941 1.21639 0.94755 0.97824 1.00680 1.21404 1.01050 0.97170 0.91360 1.21143 0.92509 1.02642 1.00480 1.22825 1.01496 0.96809 0.85916 1.21958 0.88131 0.94615 1.00523 1.21903 0.99433 0.94477 0.89839 0.92416 1.00008 0.95038 0.95370 0.89956 0.87344 0.94303 0.87653 0.93302 0.78569 0.86221 0.83279 0.82599 0.82057 0.83549 0.77842 0.94660 0.90499 0.96547 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 2 C 0.01 0.38 5.47 84.66 0.46 0.84 16 3 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 7 C -0.52 -30.69 9.03 25.60 0.23 -30.46 16 8 H 0.04 2.42 7.37 -2.91 -0.02 2.40 16 9 C 0.17 8.55 3.79 85.56 0.32 8.87 16 10 N -0.54 -23.19 4.70 -900.28 -4.23 -27.43 16 11 C 0.05 1.64 5.61 86.31 0.48 2.13 16 12 C 0.07 1.71 5.61 86.31 0.48 2.19 16 13 N -0.54 -14.06 4.70 -900.33 -4.23 -18.29 16 14 C 0.14 2.68 5.45 85.56 0.47 3.14 16 15 C -0.22 -4.83 4.96 -20.13 -0.10 -4.93 16 16 C 0.06 1.41 10.55 85.24 0.90 2.31 16 17 N -0.33 -9.04 11.87 -56.97 -0.68 -9.71 16 18 N -0.33 -8.05 3.80 -187.75 -0.71 -8.76 16 19 C 0.13 2.83 6.69 38.09 0.25 3.09 16 20 C -0.14 -2.95 9.66 22.38 0.22 -2.74 16 21 C -0.10 -1.41 10.04 22.25 0.22 -1.18 16 22 C -0.13 -1.39 10.04 22.29 0.22 -1.16 16 23 C -0.09 -0.98 10.04 22.25 0.22 -0.76 16 24 C -0.15 -2.20 9.46 22.39 0.21 -1.99 16 25 C 0.07 1.47 10.71 83.50 0.89 2.37 16 26 C 0.08 2.43 5.38 86.31 0.46 2.89 16 27 C 0.07 2.97 5.43 86.31 0.47 3.43 16 28 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 29 H -0.02 -0.89 7.18 -2.39 -0.02 -0.91 16 30 H 0.03 1.51 7.45 -2.38 -0.02 1.49 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 33 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 34 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.11 1.52 8.03 -2.39 -0.02 1.50 16 36 H 0.05 0.93 8.12 -2.38 -0.02 0.91 16 37 H 0.20 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.12 2.74 7.70 -2.91 -0.02 2.71 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 42 H 0.15 1.57 6.74 -2.91 -0.02 1.55 16 43 H 0.20 2.68 7.04 -2.91 -0.02 2.66 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 2.37 6.15 -2.39 -0.01 2.36 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 2.54 6.79 -2.38 -0.02 2.52 16 Total: -1.00 -76.00 376.97 -0.34 -76.35 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.90 Total: 13.08 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 6.43 Total: -11.96 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -9.55 Total: -124.26 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -76.00 -0.34 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105903361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.155 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds