Wall clock time and date at job start Tue Mar 31 2020 14:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99882 * 2 1 4 4 C 1.50706 * 109.46782 * 179.97438 * 3 2 1 5 5 C 1.38226 * 120.00188 * 269.72427 * 4 3 2 6 6 C 1.38234 * 120.00204 * 179.76525 * 5 4 3 7 7 C 1.38238 * 119.99589 * 0.51828 * 6 5 4 8 8 C 1.50699 * 120.00285 * 179.72542 * 7 6 5 9 9 N 1.46908 * 109.46612 * 270.02057 * 8 7 6 10 10 C 1.46895 * 111.00236 * 66.04336 * 9 8 7 11 11 C 1.50702 * 109.47326 * 63.57686 * 10 9 8 12 12 H 1.08003 * 119.99602 * 4.48330 * 11 10 9 13 13 C 1.37873 * 120.00378 * 184.48577 * 11 10 9 14 14 N 1.31514 * 120.00257 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99842 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46607 * 90.00313 * 15 13 11 17 17 H 1.48498 * 109.47235 * 210.00165 * 15 13 11 18 18 H 1.48496 * 109.46972 * 330.00522 * 15 13 11 19 19 C 1.46907 * 110.99686 * 189.99836 * 9 8 7 20 20 C 1.50696 * 109.46783 * 164.01273 * 19 9 8 21 21 C 1.38676 * 120.41869 * 275.76758 * 20 19 9 22 22 C 1.38632 * 118.41900 * 179.78326 * 21 20 19 23 23 C 1.38226 * 119.16067 * 0.51910 * 22 21 20 24 24 N 1.31852 * 120.76313 * 359.72141 * 23 22 21 25 25 C 1.31883 * 121.73127 * 359.97438 * 24 23 22 26 26 C 1.38239 * 120.00015 * 359.73992 * 7 6 5 27 27 C 1.38229 * 119.99527 * 90.00674 * 4 3 2 28 28 H 1.09003 * 109.47407 * 59.99734 * 1 2 3 29 29 H 1.08996 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47442 * 299.99845 * 1 2 3 31 31 H 1.09006 * 109.46877 * 60.00621 * 3 2 1 32 32 H 1.08991 * 109.47461 * 299.99999 * 3 2 1 33 33 H 1.08003 * 120.00465 * 0.02562 * 5 4 3 34 34 H 1.07993 * 120.00859 * 180.23486 * 6 5 4 35 35 H 1.09002 * 109.47359 * 30.01087 * 8 7 6 36 36 H 1.08992 * 109.47579 * 150.01952 * 8 7 6 37 37 H 1.08996 * 109.47062 * 183.57393 * 10 9 8 38 38 H 1.09002 * 109.47366 * 303.57716 * 10 9 8 39 39 H 0.96996 * 119.99791 * 179.97438 * 14 13 11 40 40 H 1.09001 * 109.46705 * 284.01037 * 19 9 8 41 41 H 1.08997 * 109.47395 * 44.01344 * 19 9 8 42 42 H 1.08000 * 120.79073 * 0.02562 * 21 20 19 43 43 H 1.07999 * 120.41836 * 180.21811 * 22 21 20 44 44 H 1.08003 * 119.62141 * 179.75042 * 23 22 21 45 45 H 1.07996 * 119.62203 * 180.02562 * 25 24 23 46 46 H 1.07999 * 120.00198 * 179.97438 * 26 7 6 47 47 H 1.08005 * 120.00476 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2015 1.1378 1.1980 6 6 5.5791 1.0237 1.1986 7 6 6.2686 0.9691 0.0017 8 6 7.7710 0.8509 0.0022 9 7 8.3676 2.1934 0.0023 10 6 8.0722 2.9007 1.2554 11 6 8.7097 2.1683 2.4080 12 1 9.3372 1.3094 2.2212 13 6 8.4918 2.5948 3.7009 14 7 9.0477 1.9553 4.7067 15 14 7.4070 4.0808 4.0240 16 1 6.0000 3.6383 4.1968 17 1 7.8646 4.7689 5.2578 18 1 7.4939 5.0165 2.8741 19 6 9.8157 2.1258 -0.2353 20 6 10.3263 3.4913 -0.6170 21 6 10.2532 3.9260 -1.9319 22 6 10.7310 5.1913 -2.2360 23 6 11.2705 5.9679 -1.2277 24 7 11.3283 5.5198 0.0110 25 6 10.8780 4.3241 0.3378 26 6 5.5800 1.0231 -1.1958 27 6 4.2019 1.1318 -1.1962 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.6632 1.1847 2.1331 34 1 6.1172 0.9819 2.1340 35 1 8.0927 0.3104 0.8923 36 1 8.0932 0.3102 -0.8876 37 1 8.4710 3.9137 1.2035 38 1 6.9931 2.9421 1.4036 39 1 8.8947 2.2556 5.6163 40 1 10.3176 1.7909 0.6725 41 1 10.0190 1.4230 -1.0433 42 1 9.8306 3.2953 -2.7000 43 1 10.6868 5.5637 -3.2488 44 1 11.6486 6.9532 -1.4570 45 1 10.9420 3.9915 1.3633 46 1 6.1186 0.9808 -2.1309 47 1 3.6639 1.1740 -2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159039006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:32 Heat of formation + Delta-G solvation = 22.962265 kcal Electronic energy + Delta-G solvation = -27290.089617 eV Core-core repulsion = 23630.969615 eV Total energy + Delta-G solvation = -3659.120001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.84047 -39.31473 -37.78630 -36.63697 -32.84573 -32.61986 -31.74278 -30.86316 -30.52639 -28.31311 -27.53273 -26.22331 -24.79930 -23.53342 -23.10268 -22.35093 -21.93390 -20.53600 -19.53384 -17.19879 -16.61321 -16.48795 -16.19460 -15.99437 -15.89695 -15.28357 -15.02930 -14.68601 -14.57396 -14.23605 -14.02870 -13.90405 -13.24666 -13.05277 -13.01123 -12.67343 -12.49495 -12.34577 -12.21642 -12.19219 -11.60883 -11.53667 -11.38315 -11.18180 -11.11836 -10.81524 -10.57284 -10.52552 -10.26310 -9.99046 -9.79308 -9.62627 -9.39994 -9.02747 -8.66700 -8.60837 -8.46570 -8.26643 -7.29761 -6.17483 -4.17613 1.47120 1.61663 1.69535 1.83782 3.23745 3.33168 3.39142 3.70765 4.15835 4.33103 4.35119 4.83389 4.92851 4.97926 5.05526 5.13133 5.16818 5.17618 5.21521 5.28416 5.33330 5.34947 5.37728 5.44222 5.47954 5.50344 5.57190 5.83152 5.85029 5.93238 5.96538 6.12634 6.23666 6.26929 6.42714 6.45558 6.47461 6.58690 6.75186 6.78221 6.86481 6.92830 7.04809 7.08035 7.14254 7.16802 7.41529 7.48654 7.92016 7.94446 8.35743 8.38721 8.83540 9.46066 10.94555 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003798 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.076377 B = 7370.552912 C = 8879.649945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.105 4.105 5 C -0.105 4.105 6 C -0.099 4.099 7 C -0.050 4.050 8 C 0.093 3.907 9 N -0.524 5.524 10 C 0.148 3.852 11 C -0.551 4.551 12 H 0.077 0.923 13 C 0.081 3.919 14 N -0.893 5.893 15 Si 0.866 3.134 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.094 3.906 20 C -0.107 4.107 21 C -0.063 4.063 22 C -0.184 4.184 23 C 0.082 3.918 24 N -0.490 5.490 25 C 0.116 3.884 26 C -0.109 4.109 27 C -0.108 4.108 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.031 0.969 39 H 0.264 0.736 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.163 0.837 46 H 0.119 0.881 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 -0.147 -13.422 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.030 3.970 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.051 4.051 8 C -0.034 4.034 9 N -0.246 5.246 10 C 0.022 3.978 11 C -0.589 4.589 12 H 0.095 0.905 13 C -0.123 4.123 14 N -0.531 5.531 15 Si 0.693 3.307 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.034 4.034 20 C -0.109 4.109 21 C -0.090 4.090 22 C -0.204 4.204 23 C -0.075 4.075 24 N -0.199 5.199 25 C -0.041 4.041 26 C -0.128 4.128 27 C -0.126 4.126 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.164 0.836 45 H 0.180 0.820 46 H 0.137 0.863 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.906 0.485 -12.956 15.185 hybrid contribution -0.929 0.189 0.401 1.030 sum -8.835 0.674 -12.554 15.367 Atomic orbital electron populations 1.22733 0.81485 1.02617 0.99807 1.88000 1.19173 1.27871 1.95349 1.21334 0.90527 0.84680 1.00425 1.19416 0.93236 1.04051 0.93867 1.21000 0.94525 0.99760 0.96996 1.21400 0.93621 0.97600 0.99165 1.19864 0.95657 0.96906 0.92667 1.20963 0.89789 0.91480 1.01212 1.62527 1.09097 1.15844 1.37172 1.20278 0.96963 0.94589 0.85990 1.21575 1.31577 1.15415 0.90374 0.90502 1.24856 0.95161 0.96074 0.96181 1.69906 1.43794 1.40203 0.99199 0.86982 0.81328 0.84100 0.78285 1.20050 1.21228 1.18869 1.20911 0.90019 0.91633 1.00855 1.20869 0.98065 0.98256 0.93753 1.21421 0.95810 0.95398 0.96376 1.22020 1.01997 0.95832 1.00563 1.22642 0.96800 0.99422 0.88634 1.67720 1.16683 1.15236 1.20232 1.22996 0.92221 0.88514 1.00335 1.20946 0.93575 1.00573 0.97697 1.20852 0.94294 1.00696 0.96801 0.94253 0.89730 0.94163 0.92711 0.92792 0.86574 0.84481 0.91942 0.91754 0.95479 0.95059 0.92592 0.91276 0.91596 0.85344 0.85604 0.83647 0.81978 0.86323 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.09 10.69 -35.23 -0.38 -5.47 16 3 C 0.11 1.33 6.06 36.01 0.22 1.55 16 4 C -0.11 -1.59 5.51 -104.63 -0.58 -2.17 16 5 C -0.10 -1.75 9.70 -39.59 -0.38 -2.13 16 6 C -0.10 -1.84 7.91 -39.58 -0.31 -2.15 16 7 C -0.05 -0.88 4.89 -104.62 -0.51 -1.39 16 8 C 0.09 1.64 4.94 -4.97 -0.02 1.61 16 9 N -0.52 -9.92 4.65 -238.96 -1.11 -11.03 16 10 C 0.15 3.33 3.63 -4.98 -0.02 3.31 16 11 C -0.55 -13.88 7.74 -34.44 -0.27 -14.15 16 12 H 0.08 2.08 6.19 -52.48 -0.32 1.76 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 14 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 15 Si 0.87 20.98 27.38 -169.99 -4.65 16.33 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.26 -6.39 6.67 56.52 0.38 -6.02 16 19 C 0.09 1.63 4.97 -4.97 -0.02 1.61 16 20 C -0.11 -1.82 4.91 -104.48 -0.51 -2.34 16 21 C -0.06 -0.92 9.88 -39.27 -0.39 -1.31 16 22 C -0.18 -2.45 10.11 -39.44 -0.40 -2.84 16 23 C 0.08 1.21 11.18 -17.55 -0.20 1.01 16 24 N -0.49 -8.86 10.36 -13.25 -0.14 -9.00 16 25 C 0.12 2.18 9.72 -17.55 -0.17 2.01 16 26 C -0.11 -1.67 9.70 -39.58 -0.38 -2.06 16 27 C -0.11 -1.57 9.70 -39.59 -0.38 -1.95 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.14 2.83 7.83 -52.49 -0.41 2.42 16 35 H 0.06 1.24 6.57 -51.93 -0.34 0.90 16 36 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 37 H 0.03 0.66 6.02 -51.93 -0.31 0.34 16 38 H 0.03 0.73 5.09 -51.93 -0.26 0.47 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.07 1.35 6.02 -51.93 -0.31 1.04 16 41 H 0.07 0.98 7.80 -51.93 -0.40 0.57 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.15 1.68 8.06 -52.48 -0.42 1.25 16 45 H 0.16 3.28 8.06 -52.49 -0.42 2.86 16 46 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -29.98 383.59 -10.05 -40.03 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.00 Total: 6.22 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.32 Total: -17.92 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.47 Total: -44.97 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.38 Total: -5.47 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.65 Total: 16.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.98 -10.05 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159039006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.991 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds