Wall clock time and date at job start Tue Mar 31 2020 14:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46499 * 119.99864 * 2 1 4 4 C 1.50702 * 109.47096 * 274.33168 * 3 2 1 5 5 C 1.36127 * 120.17299 * 4.87551 * 4 3 2 6 6 C 1.39336 * 120.99050 * 179.77077 * 5 4 3 7 7 C 1.36120 * 120.98838 * 0.47872 * 6 5 4 8 8 C 1.40503 * 119.65178 * 359.77807 * 7 6 5 9 9 C 1.40544 * 121.28113 * 180.02562 * 8 7 6 10 10 C 1.36092 * 119.65352 * 179.97438 * 9 8 7 11 11 C 1.39381 * 120.99317 * 0.02562 * 10 9 8 12 12 C 1.36093 * 120.99347 * 359.94901 * 11 10 9 13 13 C 1.40505 * 120.17304 * 185.14586 * 4 3 2 14 14 C 1.34781 * 120.00006 * 179.72368 * 2 1 3 15 15 O 1.21587 * 119.99861 * 179.97438 * 14 2 1 16 16 N 1.34776 * 119.99732 * 0.02562 * 14 2 1 17 17 C 1.46499 * 119.99376 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.46931 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.47380 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46927 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99703 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00047 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47125 * 89.99925 * 24 22 20 26 26 H 1.48495 * 109.47091 * 209.99644 * 24 22 20 27 27 H 1.48496 * 109.47052 * 329.99866 * 24 22 20 28 28 H 1.09004 * 109.47334 * 264.89364 * 1 2 3 29 29 H 1.08999 * 109.47342 * 24.89191 * 1 2 3 30 30 H 1.08997 * 109.47467 * 144.89544 * 1 2 3 31 31 H 1.08999 * 109.47510 * 34.33893 * 3 2 1 32 32 H 1.09009 * 109.46957 * 154.33619 * 3 2 1 33 33 H 1.08000 * 119.50257 * 359.97438 * 5 4 3 34 34 H 1.08006 * 119.50167 * 180.24083 * 6 5 4 35 35 H 1.08001 * 120.17451 * 179.75781 * 7 6 5 36 36 H 1.08001 * 120.17397 * 359.95471 * 9 8 7 37 37 H 1.08003 * 119.50105 * 180.02562 * 10 9 8 38 38 H 1.07989 * 119.50336 * 179.97438 * 11 10 9 39 39 H 1.07995 * 120.17552 * 180.02562 * 12 11 10 40 40 H 0.96994 * 120.00188 * 359.97438 * 16 14 2 41 41 H 1.08997 * 109.48117 * 300.00096 * 17 16 14 42 42 H 1.09006 * 109.47165 * 60.00441 * 17 16 14 43 43 H 1.09001 * 109.46804 * 300.00142 * 18 17 16 44 44 H 1.08998 * 109.46981 * 59.99974 * 18 17 16 45 45 H 1.08997 * 109.46991 * 300.00462 * 19 18 17 46 46 H 1.09002 * 109.46719 * 60.00249 * 19 18 17 47 47 H 0.96999 * 119.99747 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3556 1.7574 -1.4168 5 6 1.7628 1.0865 -2.4422 6 6 1.8939 1.5259 -3.7579 7 6 2.6266 2.6333 -4.0572 8 6 3.2576 3.3490 -3.0259 9 6 4.0218 4.4972 -3.2960 10 6 4.6183 5.1654 -2.2714 11 6 4.4838 4.7283 -0.9547 12 6 3.7513 3.6211 -0.6552 13 6 3.1205 2.9047 -1.6868 14 6 2.1388 -1.1672 0.0056 15 8 3.3547 -1.1672 0.0052 16 7 1.4649 -2.3344 0.0107 17 6 2.1975 -3.6030 0.0163 18 6 1.2032 -4.7660 0.0220 19 6 1.9682 -6.0910 0.0285 20 6 0.9889 -7.2364 0.0347 21 1 -0.0729 -7.0390 0.0338 22 6 1.4485 -8.5363 0.0417 23 7 2.7415 -8.7767 0.0424 24 14 0.2346 -9.9561 0.0488 25 1 -0.0866 -10.3397 -1.3494 26 1 0.8344 -11.1166 0.7550 27 1 -1.0088 -9.5408 0.7463 28 1 -0.3634 -0.0915 1.0236 29 1 -0.3634 0.9322 -0.4325 30 1 -0.3634 -0.8407 -0.5910 31 1 1.6442 2.0077 0.5797 32 1 3.1813 1.1202 0.4451 33 1 1.1793 0.2022 -2.2323 34 1 1.4100 0.9774 -4.5526 35 1 2.7227 2.9600 -5.0822 36 1 4.1354 4.8472 -4.3113 37 1 5.2046 6.0477 -2.4817 38 1 4.9679 5.2767 -0.1603 39 1 3.6556 3.2944 0.3697 40 1 0.4949 -2.3344 0.0107 41 1 2.8242 -3.6648 -0.8733 42 1 2.8241 -3.6569 0.9066 43 1 0.5769 -4.7041 0.9120 44 1 0.5762 -4.7124 -0.8680 45 1 2.5949 -6.1531 -0.8612 46 1 2.5949 -6.1444 0.9187 47 1 3.0648 -9.6912 0.0469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:39 Heat of formation + Delta-G solvation = 8.868889 kcal Electronic energy + Delta-G solvation = -26331.392060 eV Core-core repulsion = 22671.660924 eV Total energy + Delta-G solvation = -3659.731136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89611 -39.89647 -37.02265 -35.81612 -35.22333 -33.59442 -32.98057 -31.13755 -30.51544 -29.71802 -27.62777 -26.98516 -25.48473 -23.52540 -23.22987 -22.85944 -21.17614 -20.62289 -19.55088 -18.00649 -17.66329 -17.31849 -16.69766 -16.37153 -15.90916 -15.70211 -14.74068 -14.65231 -14.44649 -14.37003 -14.20535 -14.00801 -13.70794 -13.54265 -13.48067 -13.21669 -12.84873 -12.73060 -12.40745 -12.21153 -12.08773 -11.79002 -11.70190 -11.43311 -11.15665 -11.04934 -10.90121 -10.70630 -10.59031 -10.07129 -9.97883 -9.85663 -9.43904 -9.12114 -8.99881 -8.80541 -8.57042 -8.36740 -8.03521 -6.01316 -4.04427 0.31779 0.82134 1.83826 2.63068 2.80109 3.30785 3.30931 3.37202 3.39868 3.89093 4.05457 4.32916 4.44696 4.57524 4.63362 4.73998 4.77515 4.86733 4.94678 5.00739 5.14263 5.18068 5.21781 5.28510 5.34338 5.38405 5.44537 5.55840 5.70596 5.72883 5.82062 5.88212 6.01093 6.04949 6.18340 6.20600 6.22431 6.36085 6.48786 6.55242 6.61224 6.62769 6.78839 6.81374 6.99121 7.02695 7.64423 7.77318 7.97593 8.04338 8.38395 8.71471 9.02260 9.59589 11.09937 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.001971 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.336985 B =14204.697393 C =14344.222898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.637 5.637 3 C 0.172 3.828 4 C -0.085 4.085 5 C -0.104 4.104 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.050 4.050 9 C -0.106 4.106 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.105 4.105 13 C -0.043 4.043 14 C 0.701 3.299 15 O -0.585 6.585 16 N -0.740 5.740 17 C 0.134 3.866 18 C -0.120 4.120 19 C 0.024 3.976 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.394 0.606 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 30.326 -4.121 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.375 5.375 3 C 0.049 3.951 4 C -0.086 4.086 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.132 4.132 8 C -0.050 4.050 9 C -0.124 4.124 10 C -0.137 4.137 11 C -0.136 4.136 12 C -0.123 4.123 13 C -0.044 4.044 14 C 0.403 3.597 15 O -0.463 6.463 16 N -0.395 5.395 17 C 0.011 3.989 18 C -0.158 4.158 19 C -0.014 4.014 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.145 4.145 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.229 0.771 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.114 30.128 -4.099 30.479 hybrid contribution -1.118 -0.905 -0.137 1.445 sum -3.232 29.223 -4.236 29.705 Atomic orbital electron populations 1.21777 0.79775 1.03213 1.01948 1.46948 1.06277 1.04833 1.79408 1.20148 0.98661 0.83711 0.92604 1.20179 0.97160 0.94602 0.96708 1.20740 0.99790 0.99590 0.92125 1.20883 0.98726 0.96494 0.96617 1.20997 0.97937 0.95955 0.98339 1.18062 0.98330 0.95884 0.92754 1.21016 0.97281 0.94752 0.99390 1.20843 0.99907 1.00094 0.92893 1.20842 0.99126 0.96990 0.96675 1.21055 0.97298 0.95327 0.98639 1.17826 0.98232 0.95311 0.92998 1.15951 0.85416 0.80380 0.77991 1.90927 1.11549 1.86103 1.57698 1.45513 1.09843 1.05129 1.79031 1.21527 0.95159 0.80337 1.01921 1.21887 0.97846 0.95277 1.00767 1.19027 0.95480 0.89162 0.97703 1.21199 0.92973 0.90937 1.50921 0.92661 1.25039 0.95139 0.99038 0.95318 1.69970 1.12510 1.20207 1.50535 0.86578 0.81231 0.82002 0.78069 1.20678 1.21213 1.19917 0.92375 0.90610 0.91350 0.89322 0.87983 0.85895 0.85977 0.85713 0.85713 0.86108 0.85999 0.85492 0.77143 0.91951 0.91926 0.92785 0.92821 0.96250 0.96231 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 8.92 59.84 0.53 1.11 16 2 N -0.64 -7.20 1.73 -188.74 -0.33 -7.53 16 3 C 0.17 1.80 4.56 -5.19 -0.02 1.78 16 4 C -0.09 -0.96 5.88 -104.53 -0.61 -1.58 16 5 C -0.10 -1.19 9.11 -39.93 -0.36 -1.55 16 6 C -0.11 -1.12 9.95 -39.93 -0.40 -1.52 16 7 C -0.11 -1.12 9.77 -39.49 -0.39 -1.50 16 8 C -0.05 -0.53 5.74 -106.83 -0.61 -1.15 16 9 C -0.11 -0.93 9.77 -39.48 -0.39 -1.31 16 10 C -0.12 -0.95 9.95 -39.93 -0.40 -1.35 16 11 C -0.12 -0.97 9.95 -39.93 -0.40 -1.37 16 12 C -0.11 -0.99 9.37 -39.48 -0.37 -1.36 16 13 C -0.04 -0.48 5.74 -106.83 -0.61 -1.09 16 14 C 0.70 10.94 8.19 -86.92 -0.71 10.23 16 15 O -0.59 -11.69 15.85 5.29 0.08 -11.60 16 16 N -0.74 -10.93 5.42 -65.22 -0.35 -11.29 16 17 C 0.13 2.41 5.67 -4.04 -0.02 2.39 16 18 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 24 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.45 8.03 -51.93 -0.42 0.04 16 30 H 0.07 0.48 6.66 -51.93 -0.35 0.13 16 31 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.10 1.24 6.99 -51.92 -0.36 0.88 16 33 H 0.12 1.39 6.02 -52.49 -0.32 1.07 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.97 6.97 -52.49 -0.37 0.60 16 40 H 0.39 4.67 6.32 -40.82 -0.26 4.41 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -34.61 386.97 -11.60 -46.22 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.10 Total: 1.71 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -5.45 Total: -13.67 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.06 Total: -44.96 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.61 -11.60 -46.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.086 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds