Wall clock time and date at job start Tue Mar 31 2020 14:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46499 * 119.99864 * 2 1 4 4 C 1.50702 * 109.47096 * 274.33168 * 3 2 1 5 5 C 1.36127 * 120.17299 * 4.87551 * 4 3 2 6 6 C 1.39336 * 120.99050 * 179.77077 * 5 4 3 7 7 C 1.36120 * 120.98838 * 0.47872 * 6 5 4 8 8 C 1.40503 * 119.65178 * 359.77807 * 7 6 5 9 9 C 1.40544 * 121.28113 * 180.02562 * 8 7 6 10 10 C 1.36092 * 119.65352 * 179.97438 * 9 8 7 11 11 C 1.39381 * 120.99317 * 0.02562 * 10 9 8 12 12 C 1.36093 * 120.99347 * 359.94901 * 11 10 9 13 13 C 1.40505 * 120.17304 * 185.14586 * 4 3 2 14 14 C 1.34781 * 120.00006 * 179.72368 * 2 1 3 15 15 O 1.21587 * 119.99861 * 179.97438 * 14 2 1 16 16 N 1.34776 * 119.99732 * 0.02562 * 14 2 1 17 17 C 1.46499 * 119.99376 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.46931 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.47380 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46927 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99703 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00047 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47125 * 89.99925 * 24 22 20 26 26 H 1.48495 * 109.47091 * 209.99644 * 24 22 20 27 27 H 1.48496 * 109.47052 * 329.99866 * 24 22 20 28 28 H 1.09004 * 109.47334 * 264.89364 * 1 2 3 29 29 H 1.08999 * 109.47342 * 24.89191 * 1 2 3 30 30 H 1.08997 * 109.47467 * 144.89544 * 1 2 3 31 31 H 1.08999 * 109.47510 * 34.33893 * 3 2 1 32 32 H 1.09009 * 109.46957 * 154.33619 * 3 2 1 33 33 H 1.08000 * 119.50257 * 359.97438 * 5 4 3 34 34 H 1.08006 * 119.50167 * 180.24083 * 6 5 4 35 35 H 1.08001 * 120.17451 * 179.75781 * 7 6 5 36 36 H 1.08001 * 120.17397 * 359.95471 * 9 8 7 37 37 H 1.08003 * 119.50105 * 180.02562 * 10 9 8 38 38 H 1.07989 * 119.50336 * 179.97438 * 11 10 9 39 39 H 1.07995 * 120.17552 * 180.02562 * 12 11 10 40 40 H 0.96994 * 120.00188 * 359.97438 * 16 14 2 41 41 H 1.08997 * 109.48117 * 300.00096 * 17 16 14 42 42 H 1.09006 * 109.47165 * 60.00441 * 17 16 14 43 43 H 1.09001 * 109.46804 * 300.00142 * 18 17 16 44 44 H 1.08998 * 109.46981 * 59.99974 * 18 17 16 45 45 H 1.08997 * 109.46991 * 300.00462 * 19 18 17 46 46 H 1.09002 * 109.46719 * 60.00249 * 19 18 17 47 47 H 0.96999 * 119.99747 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3556 1.7574 -1.4168 5 6 1.7628 1.0865 -2.4422 6 6 1.8939 1.5259 -3.7579 7 6 2.6266 2.6333 -4.0572 8 6 3.2576 3.3490 -3.0259 9 6 4.0218 4.4972 -3.2960 10 6 4.6183 5.1654 -2.2714 11 6 4.4838 4.7283 -0.9547 12 6 3.7513 3.6211 -0.6552 13 6 3.1205 2.9047 -1.6868 14 6 2.1388 -1.1672 0.0056 15 8 3.3547 -1.1672 0.0052 16 7 1.4649 -2.3344 0.0107 17 6 2.1975 -3.6030 0.0163 18 6 1.2032 -4.7660 0.0220 19 6 1.9682 -6.0910 0.0285 20 6 0.9889 -7.2364 0.0347 21 1 -0.0729 -7.0390 0.0338 22 6 1.4485 -8.5363 0.0417 23 7 2.7415 -8.7767 0.0424 24 14 0.2346 -9.9561 0.0488 25 1 -0.0866 -10.3397 -1.3494 26 1 0.8344 -11.1166 0.7550 27 1 -1.0088 -9.5408 0.7463 28 1 -0.3634 -0.0915 1.0236 29 1 -0.3634 0.9322 -0.4325 30 1 -0.3634 -0.8407 -0.5910 31 1 1.6442 2.0077 0.5797 32 1 3.1813 1.1202 0.4451 33 1 1.1793 0.2022 -2.2323 34 1 1.4100 0.9774 -4.5526 35 1 2.7227 2.9600 -5.0822 36 1 4.1354 4.8472 -4.3113 37 1 5.2046 6.0477 -2.4817 38 1 4.9679 5.2767 -0.1603 39 1 3.6556 3.2944 0.3697 40 1 0.4949 -2.3344 0.0107 41 1 2.8242 -3.6648 -0.8733 42 1 2.8241 -3.6569 0.9066 43 1 0.5769 -4.7041 0.9120 44 1 0.5762 -4.7124 -0.8680 45 1 2.5949 -6.1531 -0.8612 46 1 2.5949 -6.1444 0.9187 47 1 3.0648 -9.6912 0.0469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170885910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:38 Heat of formation + Delta-G solvation = -9.485890 kcal Electronic energy + Delta-G solvation = -26332.187983 eV Core-core repulsion = 22671.660924 eV Total energy + Delta-G solvation = -3660.527059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74604 -40.91601 -37.88434 -37.00121 -36.46005 -35.25485 -34.07090 -32.82166 -31.21531 -30.50251 -28.71742 -28.29255 -26.66374 -24.77714 -24.13632 -23.84516 -22.30753 -22.05531 -20.71230 -19.09252 -18.47931 -18.40796 -18.04091 -17.53682 -16.97716 -16.78737 -16.47227 -15.94365 -15.52228 -15.38058 -15.11390 -14.96857 -14.64093 -14.45841 -14.28462 -14.22766 -13.99025 -13.74955 -13.55832 -13.46922 -13.38597 -13.07452 -12.76350 -12.73696 -12.51871 -12.35890 -12.14538 -11.85096 -11.73509 -11.66894 -11.61560 -11.29175 -11.13113 -10.69947 -10.54998 -10.25200 -9.62952 -9.52516 -8.74753 -8.18872 -6.30441 -0.38644 0.09572 1.11833 1.41957 1.43576 1.54253 1.58277 2.07605 2.11057 2.42235 2.98106 3.14773 3.17907 3.61894 3.88867 3.95384 4.05313 4.13373 4.15345 4.22364 4.22760 4.29474 4.34972 4.41159 4.49991 4.55230 4.55893 4.63929 4.70333 4.86404 4.87820 4.95427 4.97819 5.01940 5.16538 5.19970 5.31814 5.35835 5.39492 5.46146 5.53824 5.54973 5.64622 5.71137 5.72785 5.84529 5.89221 5.92675 6.12437 6.22757 6.86485 6.94044 7.39000 7.51963 8.93280 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.001971 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.336985 B =14204.697393 C =14344.222898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.626 5.626 3 C 0.174 3.826 4 C -0.097 4.097 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.116 4.116 8 C -0.072 4.072 9 C -0.115 4.115 10 C -0.122 4.122 11 C -0.119 4.119 12 C -0.123 4.123 13 C -0.064 4.064 14 C 0.698 3.302 15 O -0.636 6.636 16 N -0.728 5.728 17 C 0.149 3.851 18 C -0.099 4.099 19 C 0.024 3.976 20 C -0.539 4.539 21 H 0.068 0.932 22 C -0.006 4.006 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.259 1.259 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.411 0.589 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.068 0.932 45 H -0.009 1.009 46 H -0.008 1.008 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 31.998 -4.334 32.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.362 5.362 3 C 0.050 3.950 4 C -0.099 4.099 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.134 4.134 8 C -0.072 4.072 9 C -0.133 4.133 10 C -0.139 4.139 11 C -0.136 4.136 12 C -0.140 4.140 13 C -0.064 4.064 14 C 0.399 3.601 15 O -0.517 6.517 16 N -0.385 5.385 17 C 0.025 3.975 18 C -0.137 4.137 19 C -0.014 4.014 20 C -0.577 4.577 21 H 0.086 0.914 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.183 1.183 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.249 0.751 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.241 31.850 -4.312 32.419 hybrid contribution -0.417 -1.297 -0.082 1.365 sum -4.658 30.553 -4.394 31.217 Atomic orbital electron populations 1.22065 0.77043 1.04714 1.03419 1.46947 1.07872 1.03629 1.77760 1.20242 0.98159 0.83750 0.92801 1.20277 0.97655 0.95063 0.96868 1.20840 1.00481 0.99704 0.92870 1.21098 0.99394 0.97118 0.96654 1.21306 0.97173 0.95550 0.99382 1.18406 0.99091 0.96887 0.92855 1.21325 0.96877 0.94198 1.00857 1.21229 0.99473 1.00669 0.92572 1.21212 0.98250 0.96473 0.97699 1.21270 0.97900 0.95937 0.98933 1.18085 0.98766 0.95669 0.93911 1.16121 0.84888 0.81390 0.77715 1.90892 1.13968 1.86959 1.59924 1.45146 1.10489 1.03895 1.79004 1.21074 0.94611 0.81520 1.00321 1.21581 0.97429 0.92541 1.02147 1.18942 0.95185 0.92257 0.95039 1.21675 0.93889 0.91801 1.50377 0.91402 1.26054 0.97055 1.02357 0.94838 1.70122 1.14803 1.20940 1.51706 0.85393 0.78936 0.77953 0.78423 1.19851 1.21105 1.18325 0.90660 0.88635 0.90594 0.86115 0.90145 0.86291 0.84553 0.83474 0.83576 0.83437 0.83657 0.84490 0.75113 0.93801 0.93572 0.91250 0.91329 0.99067 0.98973 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.92 127.77 1.14 2.03 16 2 N -0.63 -13.69 1.73 -869.32 -1.50 -15.19 16 3 C 0.17 3.57 4.56 85.63 0.39 3.96 16 4 C -0.10 -2.20 5.88 -19.80 -0.12 -2.32 16 5 C -0.12 -2.75 9.11 22.04 0.20 -2.55 16 6 C -0.12 -2.53 9.95 22.04 0.22 -2.31 16 7 C -0.12 -2.20 9.77 22.33 0.22 -1.98 16 8 C -0.07 -1.49 5.74 -21.30 -0.12 -1.61 16 9 C -0.11 -1.82 9.77 22.33 0.22 -1.60 16 10 C -0.12 -1.68 9.95 22.05 0.22 -1.46 16 11 C -0.12 -1.74 9.95 22.05 0.22 -1.52 16 12 C -0.12 -2.22 9.37 22.33 0.21 -2.01 16 13 C -0.06 -1.40 5.74 -21.30 -0.12 -1.53 16 14 C 0.70 21.91 8.19 179.05 1.47 23.38 16 15 O -0.64 -26.42 15.85 -3.99 -0.06 -26.48 16 16 N -0.73 -21.19 5.42 -478.52 -2.59 -23.79 16 17 C 0.15 5.51 5.67 86.38 0.49 6.00 16 18 C -0.10 -3.85 5.27 30.60 0.16 -3.69 16 19 C 0.02 1.24 4.97 29.85 0.15 1.38 16 20 C -0.54 -30.17 9.11 25.60 0.23 -29.93 16 21 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 22 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 23 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 24 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.90 8.03 -2.39 -0.02 0.88 16 30 H 0.08 0.88 6.66 -2.39 -0.02 0.86 16 31 H 0.12 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.08 2.03 6.99 -2.38 -0.02 2.01 16 33 H 0.12 2.68 6.02 -2.91 -0.02 2.66 16 34 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.15 1.36 8.06 -2.92 -0.02 1.34 16 39 H 0.14 2.03 6.97 -2.91 -0.02 2.01 16 40 H 0.41 9.01 6.32 -92.71 -0.59 8.42 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.48 386.97 4.17 -73.31 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.38 Total: 19.13 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 5.63 Total: -15.62 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -3.81 Total: -96.25 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.48 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -77.48 4.17 -73.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.827 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds