Wall clock time and date at job start Tue Mar 31 2020 14:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99854 * 2 1 4 4 C 1.50699 * 109.47163 * 270.00375 * 3 2 1 5 5 H 1.07999 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99831 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00082 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99891 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47435 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47161 * 120.00281 * 8 6 4 11 11 H 1.48502 * 109.47490 * 240.00320 * 8 6 4 12 12 C 1.39675 * 119.99984 * 180.02562 * 2 1 3 13 13 C 1.38904 * 120.07476 * 359.97438 * 12 2 1 14 14 C 1.38111 * 119.92334 * 180.02562 * 13 12 2 15 15 C 1.38288 * 120.07162 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.92072 * 179.97438 * 15 14 13 17 17 N 1.46895 * 109.47359 * 89.99575 * 16 15 14 18 18 C 1.46897 * 111.00059 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47055 * 180.02562 * 18 17 16 20 20 C 1.38289 * 119.96926 * 270.02209 * 19 18 17 21 21 C 1.38240 * 120.11036 * 180.02562 * 20 19 18 22 22 C 1.38173 * 120.05812 * 359.67646 * 21 20 19 23 23 C 1.38709 * 119.93675 * 0.57760 * 22 21 20 24 24 O 1.35905 * 120.05346 * 179.72475 * 23 22 21 25 25 C 1.38116 * 119.97322 * 90.00238 * 19 18 17 26 26 C 1.38277 * 120.15410 * 0.26688 * 15 14 13 27 27 C 1.38112 * 120.07394 * 359.45791 * 26 15 14 28 28 H 1.09008 * 109.46963 * 269.99938 * 1 2 3 29 29 H 1.09004 * 109.47423 * 29.99446 * 1 2 3 30 30 H 1.08996 * 109.47563 * 150.00094 * 1 2 3 31 31 H 1.09000 * 109.46933 * 30.00766 * 3 2 1 32 32 H 1.09000 * 109.47008 * 150.00448 * 3 2 1 33 33 H 0.97004 * 119.99521 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.03772 * 0.02562 * 13 12 2 35 35 H 1.07994 * 119.96064 * 179.97438 * 14 13 12 36 36 H 1.09000 * 109.47234 * 329.99658 * 16 15 14 37 37 H 1.08998 * 109.47346 * 209.99933 * 16 15 14 38 38 H 1.00904 * 110.99759 * 56.04972 * 17 16 15 39 39 H 1.09002 * 109.47307 * 60.00138 * 18 17 16 40 40 H 1.09000 * 109.47236 * 299.99834 * 18 17 16 41 41 H 1.08001 * 119.94341 * 0.02562 * 20 19 18 42 42 H 1.08006 * 119.97312 * 179.97438 * 21 20 19 43 43 H 1.07996 * 120.03009 * 180.29712 * 22 21 20 44 44 H 0.96705 * 113.99576 * 269.72355 * 24 23 22 45 45 H 1.08003 * 120.03068 * 0.02562 * 25 19 18 46 46 H 1.07994 * 119.96363 * 179.70496 * 26 15 14 47 47 H 1.08002 * 120.03962 * 180.27389 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6731 8 14 3.4364 3.4178 -3.4338 9 1 2.8585 2.4179 -4.3673 10 1 2.7984 4.7384 -3.6667 11 1 4.8989 3.5266 -3.6677 12 6 2.1633 -1.2096 -0.0005 13 6 1.4704 -2.4135 -0.0005 14 6 2.1641 -3.6077 -0.0005 15 6 3.5470 -3.6058 0.0000 16 6 4.3005 -4.9109 0.0006 17 7 4.5458 -5.3353 -1.3842 18 6 5.2806 -6.6068 -1.4227 19 6 5.5137 -7.0089 -2.8563 20 6 4.5831 -7.7923 -3.5141 21 6 4.7943 -8.1633 -4.8289 22 6 5.9330 -7.7465 -5.4913 23 6 6.8704 -6.9651 -4.8320 24 8 7.9940 -6.5585 -5.4795 25 6 6.6564 -6.5944 -3.5121 26 6 4.2399 -2.4092 0.0061 27 6 3.5525 -1.2113 0.0004 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6084 2.0284 0.5140 32 1 3.1499 1.1385 0.5138 33 1 4.0293 4.4445 -0.8504 34 1 0.3904 -2.4156 -0.0005 35 1 1.6259 -4.5440 -0.0001 36 1 3.7112 -5.6704 0.5144 37 1 5.2527 -4.7805 0.5147 38 1 5.0350 -4.6196 -1.9005 39 1 4.6985 -7.3783 -0.9186 40 1 6.2396 -6.4876 -0.9187 41 1 3.6899 -8.1148 -2.9997 42 1 4.0662 -8.7755 -5.3404 43 1 6.0952 -8.0327 -6.5200 44 1 8.7395 -7.1685 -5.3944 45 1 7.3829 -5.9827 -2.9980 46 1 5.3198 -2.4113 0.0113 47 1 4.0943 -0.2770 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171134321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:28 Heat of formation + Delta-G solvation = 14.486542 kcal Electronic energy + Delta-G solvation = -25930.220825 eV Core-core repulsion = 22270.733288 eV Total energy + Delta-G solvation = -3659.487536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.01685 -39.02742 -37.41385 -36.35881 -35.00009 -32.74881 -31.82864 -30.42876 -30.12965 -29.40936 -27.79339 -26.40832 -24.85818 -23.60584 -22.80226 -22.11533 -21.52061 -21.43974 -19.58621 -18.34555 -16.74920 -16.59434 -16.46665 -16.17820 -15.63581 -15.33187 -14.94697 -14.89578 -14.68602 -14.19592 -14.07781 -13.74869 -13.65542 -13.15674 -12.97512 -12.85173 -12.55186 -12.33977 -12.29224 -12.12726 -11.81948 -11.67226 -11.59488 -11.38940 -11.24597 -10.93098 -10.81571 -10.68379 -10.59152 -10.26447 -9.87105 -9.74903 -9.17808 -8.88226 -8.77127 -8.50768 -8.40635 -8.24819 -6.46164 -6.01482 -4.17210 1.00940 1.07525 2.12461 2.23552 3.26106 3.34337 3.37006 3.39993 3.90105 4.15489 4.32037 4.42129 4.56153 4.61939 4.74215 4.87961 5.04706 5.15232 5.21780 5.23987 5.29148 5.38605 5.42037 5.60439 5.63540 5.64804 5.75067 5.76759 5.83946 6.02300 6.08756 6.14525 6.17291 6.29375 6.36210 6.40240 6.44348 6.56677 6.65694 6.89433 6.99539 7.07340 7.21079 7.24672 7.32721 7.38760 7.41552 7.61409 7.81677 8.15829 8.27271 8.49451 8.92477 9.49875 10.95687 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002590 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.366845 B =10809.715456 C =12451.401106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.248 3.752 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.242 3.758 13 C -0.223 4.223 14 C -0.050 4.050 15 C -0.175 4.175 16 C 0.116 3.884 17 N -0.680 5.680 18 C 0.096 3.904 19 C -0.063 4.063 20 C -0.106 4.106 21 C -0.106 4.106 22 C -0.147 4.147 23 C 0.102 3.898 24 O -0.499 6.499 25 C -0.139 4.139 26 C -0.067 4.067 27 C -0.188 4.188 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.345 0.655 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.388 0.612 45 H 0.126 0.874 46 H 0.107 0.893 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 -23.950 -2.004 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.321 5.321 3 C 0.129 3.871 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.070 4.070 15 C -0.178 4.178 16 C -0.012 4.012 17 N -0.312 5.312 18 C -0.033 4.033 19 C -0.064 4.064 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.166 4.166 23 C 0.058 3.942 24 O -0.309 6.309 25 C -0.158 4.158 26 C -0.086 4.086 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.164 0.836 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.244 0.756 45 H 0.144 0.856 46 H 0.125 0.875 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.001 -23.356 -2.161 23.647 hybrid contribution 1.391 0.494 -0.771 1.665 sum 4.391 -22.862 -2.932 23.464 Atomic orbital electron populations 1.21475 0.81493 1.01955 0.99673 1.47107 1.04399 1.04625 1.75967 1.19291 0.92071 0.78767 0.96999 1.21625 1.36244 1.06354 0.92686 0.92179 1.24963 0.95420 0.96295 0.97419 1.69943 1.38474 1.14345 1.30702 0.86474 0.78063 0.78467 0.84685 1.19678 1.20941 1.20831 1.17965 0.91500 0.86015 0.91033 1.20573 0.99036 0.91417 1.13563 1.20483 0.93188 0.96504 0.96783 1.19141 0.93673 0.93238 1.11717 1.20662 0.97589 0.94603 0.88340 1.60629 1.51522 1.04696 1.14317 1.20909 0.96893 0.93643 0.91854 1.19706 0.93679 0.96880 0.96098 1.21079 0.98676 0.98004 0.94652 1.21050 0.96938 0.99694 0.94709 1.21419 0.95667 0.98996 1.00534 1.18442 0.88823 0.96507 0.90456 1.84864 1.21606 1.50113 1.74323 1.21344 0.99000 1.01473 0.93995 1.20653 0.98420 0.91747 0.97805 1.20847 0.92706 0.98669 1.08786 0.94614 0.91463 0.92647 0.95198 0.94644 0.92712 0.86895 0.87305 0.91035 0.95211 0.83615 0.90071 0.94495 0.85537 0.85590 0.85622 0.75648 0.85637 0.87485 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.75 10.19 59.85 0.61 2.36 16 2 N -0.62 -13.33 2.99 -180.99 -0.54 -13.87 16 3 C 0.25 6.28 4.91 -5.19 -0.03 6.25 16 4 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.24 4.96 6.55 -83.79 -0.55 4.41 16 13 C -0.22 -3.94 9.21 -39.38 -0.36 -4.30 16 14 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 15 C -0.17 -2.69 5.39 -104.59 -0.56 -3.26 16 16 C 0.12 1.41 5.81 -4.98 -0.03 1.38 16 17 N -0.68 -8.13 6.48 -116.34 -0.75 -8.89 16 18 C 0.10 0.92 5.81 -4.97 -0.03 0.89 16 19 C -0.06 -0.63 5.39 -104.64 -0.56 -1.20 16 20 C -0.11 -1.00 9.70 -39.56 -0.38 -1.38 16 21 C -0.11 -0.93 10.04 -39.60 -0.40 -1.33 16 22 C -0.15 -1.37 9.99 -39.43 -0.39 -1.77 16 23 C 0.10 1.04 6.70 -39.22 -0.26 0.78 16 24 O -0.50 -4.67 13.50 -19.44 -0.26 -4.93 16 25 C -0.14 -1.42 9.64 -39.43 -0.38 -1.80 16 26 C -0.07 -1.14 9.69 -39.61 -0.38 -1.53 16 27 C -0.19 -3.82 9.21 -39.38 -0.36 -4.18 16 28 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.05 0.88 6.20 -51.93 -0.32 0.56 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.11 1.81 6.14 -52.49 -0.32 1.48 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.35 4.46 8.71 -39.29 -0.34 4.11 16 39 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.39 1.61 9.06 45.56 0.41 2.02 16 45 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.13 2.94 6.14 -52.49 -0.32 2.61 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -31.34 393.43 -11.04 -42.38 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.24 Total: 7.12 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -4.88 Total: -19.19 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.56 Total: -47.84 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.26 Total: -4.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.34 -11.04 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171134321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.865 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds