Wall clock time and date at job start Tue Mar 31 2020 14:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99854 * 2 1 4 4 C 1.50699 * 109.47163 * 270.00375 * 3 2 1 5 5 H 1.07999 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99831 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00082 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99891 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47435 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47161 * 120.00281 * 8 6 4 11 11 H 1.48502 * 109.47490 * 240.00320 * 8 6 4 12 12 C 1.39675 * 119.99984 * 180.02562 * 2 1 3 13 13 C 1.38904 * 120.07476 * 359.97438 * 12 2 1 14 14 C 1.38111 * 119.92334 * 180.02562 * 13 12 2 15 15 C 1.38288 * 120.07162 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.92072 * 179.97438 * 15 14 13 17 17 N 1.46895 * 109.47359 * 89.99575 * 16 15 14 18 18 C 1.46897 * 111.00059 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47055 * 180.02562 * 18 17 16 20 20 C 1.38289 * 119.96926 * 270.02209 * 19 18 17 21 21 C 1.38240 * 120.11036 * 180.02562 * 20 19 18 22 22 C 1.38173 * 120.05812 * 359.67646 * 21 20 19 23 23 C 1.38709 * 119.93675 * 0.57760 * 22 21 20 24 24 O 1.35905 * 120.05346 * 179.72475 * 23 22 21 25 25 C 1.38116 * 119.97322 * 90.00238 * 19 18 17 26 26 C 1.38277 * 120.15410 * 0.26688 * 15 14 13 27 27 C 1.38112 * 120.07394 * 359.45791 * 26 15 14 28 28 H 1.09008 * 109.46963 * 269.99938 * 1 2 3 29 29 H 1.09004 * 109.47423 * 29.99446 * 1 2 3 30 30 H 1.08996 * 109.47563 * 150.00094 * 1 2 3 31 31 H 1.09000 * 109.46933 * 30.00766 * 3 2 1 32 32 H 1.09000 * 109.47008 * 150.00448 * 3 2 1 33 33 H 0.97004 * 119.99521 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.03772 * 0.02562 * 13 12 2 35 35 H 1.07994 * 119.96064 * 179.97438 * 14 13 12 36 36 H 1.09000 * 109.47234 * 329.99658 * 16 15 14 37 37 H 1.08998 * 109.47346 * 209.99933 * 16 15 14 38 38 H 1.00904 * 110.99759 * 56.04972 * 17 16 15 39 39 H 1.09002 * 109.47307 * 60.00138 * 18 17 16 40 40 H 1.09000 * 109.47236 * 299.99834 * 18 17 16 41 41 H 1.08001 * 119.94341 * 0.02562 * 20 19 18 42 42 H 1.08006 * 119.97312 * 179.97438 * 21 20 19 43 43 H 1.07996 * 120.03009 * 180.29712 * 22 21 20 44 44 H 0.96705 * 113.99576 * 269.72355 * 24 23 22 45 45 H 1.08003 * 120.03068 * 0.02562 * 25 19 18 46 46 H 1.07994 * 119.96363 * 179.70496 * 26 15 14 47 47 H 1.08002 * 120.03962 * 180.27389 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6731 8 14 3.4364 3.4178 -3.4338 9 1 2.8585 2.4179 -4.3673 10 1 2.7984 4.7384 -3.6667 11 1 4.8989 3.5266 -3.6677 12 6 2.1633 -1.2096 -0.0005 13 6 1.4704 -2.4135 -0.0005 14 6 2.1641 -3.6077 -0.0005 15 6 3.5470 -3.6058 0.0000 16 6 4.3005 -4.9109 0.0006 17 7 4.5458 -5.3353 -1.3842 18 6 5.2806 -6.6068 -1.4227 19 6 5.5137 -7.0089 -2.8563 20 6 4.5831 -7.7923 -3.5141 21 6 4.7943 -8.1633 -4.8289 22 6 5.9330 -7.7465 -5.4913 23 6 6.8704 -6.9651 -4.8320 24 8 7.9940 -6.5585 -5.4795 25 6 6.6564 -6.5944 -3.5121 26 6 4.2399 -2.4092 0.0061 27 6 3.5525 -1.2113 0.0004 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6084 2.0284 0.5140 32 1 3.1499 1.1385 0.5138 33 1 4.0293 4.4445 -0.8504 34 1 0.3904 -2.4156 -0.0005 35 1 1.6259 -4.5440 -0.0001 36 1 3.7112 -5.6704 0.5144 37 1 5.2527 -4.7805 0.5147 38 1 5.0350 -4.6196 -1.9005 39 1 4.6985 -7.3783 -0.9186 40 1 6.2396 -6.4876 -0.9187 41 1 3.6899 -8.1148 -2.9997 42 1 4.0662 -8.7755 -5.3404 43 1 6.0952 -8.0327 -6.5200 44 1 8.7395 -7.1685 -5.3944 45 1 7.3829 -5.9827 -2.9980 46 1 5.3198 -2.4113 0.0113 47 1 4.0943 -0.2770 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171134321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:27 Heat of formation + Delta-G solvation = -4.808567 kcal Electronic energy + Delta-G solvation = -25931.057523 eV Core-core repulsion = 22270.733288 eV Total energy + Delta-G solvation = -3660.324235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.72554 -40.41091 -38.25641 -37.54581 -36.15756 -34.74895 -32.76705 -31.87680 -30.98318 -30.47278 -29.59807 -27.55922 -26.27533 -24.97231 -23.58642 -23.42407 -22.93677 -22.21783 -21.01974 -19.06890 -18.64947 -18.11466 -17.32756 -17.08847 -16.78201 -16.46462 -16.27028 -15.89602 -15.78919 -15.56274 -15.31595 -15.08120 -14.68044 -14.43002 -14.28118 -14.15862 -14.00523 -13.41885 -13.19867 -13.14252 -13.06836 -13.05418 -12.94086 -12.67825 -12.57633 -12.53696 -12.29399 -12.21279 -11.93680 -11.73148 -11.40247 -11.34859 -10.65949 -10.43777 -9.85682 -9.65653 -9.53024 -9.27631 -8.37478 -7.80157 -6.38793 0.30797 0.37914 0.72028 0.86401 1.34475 1.36417 1.48690 2.33207 2.63466 2.67610 3.04526 3.07463 3.28855 3.66812 3.85300 3.97377 4.07314 4.13719 4.23119 4.26525 4.39829 4.41498 4.46147 4.54831 4.64959 4.65943 4.71647 4.74492 4.77717 4.87550 4.93037 4.99407 5.02052 5.08807 5.13801 5.20080 5.34216 5.45505 5.49476 5.59145 5.65361 5.68470 5.70116 5.92426 5.94129 6.06236 6.11358 6.24234 6.40253 6.49870 6.82297 6.86162 6.94069 7.33259 8.81912 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002590 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.366845 B =10809.715456 C =12451.401106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.633 5.633 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.211 3.789 13 C -0.219 4.219 14 C -0.048 4.048 15 C -0.160 4.160 16 C 0.121 3.879 17 N -0.688 5.688 18 C 0.100 3.900 19 C -0.072 4.072 20 C -0.115 4.115 21 C -0.107 4.107 22 C -0.157 4.157 23 C 0.090 3.910 24 O -0.514 6.514 25 C -0.154 4.154 26 C -0.069 4.069 27 C -0.217 4.217 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.010 0.990 32 H 0.011 0.989 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.337 0.663 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.140 0.860 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.408 0.592 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 -26.848 -2.849 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.341 5.341 3 C 0.145 3.855 4 C -0.579 4.579 5 H 0.066 0.934 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.107 3.893 13 C -0.241 4.241 14 C -0.067 4.067 15 C -0.163 4.163 16 C -0.007 4.007 17 N -0.319 5.319 18 C -0.028 4.028 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.176 4.176 23 C 0.046 3.954 24 O -0.328 6.328 25 C -0.173 4.173 26 C -0.088 4.088 27 C -0.240 4.240 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.154 0.846 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.157 0.843 42 H 0.166 0.834 43 H 0.156 0.844 44 H 0.267 0.733 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.485 -26.307 -2.997 26.594 hybrid contribution 1.624 1.236 -0.504 2.102 sum 4.109 -25.072 -3.500 25.646 Atomic orbital electron populations 1.21602 0.79417 1.02499 1.00983 1.46969 1.05638 1.03731 1.77713 1.18770 0.91073 0.80298 0.95374 1.21803 1.36310 1.06443 0.93346 0.93421 1.25766 0.95092 0.96326 1.01445 1.70042 1.39077 1.14808 1.32707 0.85469 0.78060 0.78217 0.79707 1.19657 1.19800 1.20264 1.18246 0.91666 0.86542 0.92886 1.20825 1.00075 0.90763 1.12463 1.20897 0.93478 0.97091 0.95198 1.19532 0.93998 0.94014 1.08740 1.20658 0.97959 0.93145 0.88952 1.60615 1.52194 1.05293 1.13798 1.20931 0.97288 0.92696 0.91881 1.19814 0.93791 0.97204 0.96412 1.21320 0.99008 0.97947 0.95074 1.21357 0.97076 0.99424 0.94651 1.21658 0.95722 0.98925 1.01264 1.18639 0.89371 0.96783 0.90646 1.84801 1.22321 1.51329 1.74306 1.21463 0.99483 1.02022 0.94360 1.20840 0.99294 0.91389 0.97289 1.20755 0.93220 0.98506 1.11520 0.92841 0.92575 0.90376 0.97232 0.97119 0.92365 0.85004 0.83977 0.88996 0.94230 0.84552 0.88608 0.93733 0.84263 0.83355 0.84355 0.73315 0.85633 0.86029 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.47 10.19 127.77 1.30 4.78 16 2 N -0.63 -28.30 2.99 -726.54 -2.17 -30.47 16 3 C 0.27 14.27 4.91 85.63 0.42 14.69 16 4 C -0.54 -30.98 9.39 25.60 0.24 -30.74 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 8 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.21 8.80 6.55 38.21 0.25 9.05 16 13 C -0.22 -7.34 9.21 22.40 0.21 -7.13 16 14 C -0.05 -1.36 9.69 22.25 0.22 -1.15 16 15 C -0.16 -4.56 5.39 -19.84 -0.11 -4.67 16 16 C 0.12 2.53 5.81 85.56 0.50 3.03 16 17 N -0.69 -14.56 6.48 -521.99 -3.38 -17.95 16 18 C 0.10 1.64 5.81 85.56 0.50 2.14 16 19 C -0.07 -1.30 5.39 -19.88 -0.11 -1.41 16 20 C -0.12 -1.91 9.70 22.28 0.22 -1.69 16 21 C -0.11 -1.65 10.04 22.25 0.22 -1.43 16 22 C -0.16 -2.68 9.99 22.37 0.22 -2.46 16 23 C 0.09 1.74 6.70 22.51 0.15 1.89 16 24 O -0.51 -9.19 13.50 -92.48 -1.25 -10.44 16 25 C -0.15 -3.00 9.64 22.36 0.22 -2.79 16 26 C -0.07 -2.34 9.69 22.25 0.22 -2.13 16 27 C -0.22 -9.23 9.21 22.40 0.21 -9.02 16 28 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 30 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 31 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 32 H 0.01 0.62 6.20 -2.39 -0.01 0.61 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 35 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.04 0.78 8.08 -2.39 -0.02 0.76 16 38 H 0.34 8.10 8.71 -89.69 -0.78 7.32 16 39 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 40 H 0.04 0.67 8.08 -2.39 -0.02 0.65 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 44 H 0.41 3.00 9.06 -74.05 -0.67 2.33 16 45 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 46 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 47 H 0.09 4.60 6.14 -2.91 -0.02 4.59 16 Total: -1.00 -69.50 393.43 0.37 -69.13 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.47 Total: 25.31 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 5.33 Total: -27.83 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -5.27 Total: -103.18 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -1.25 Total: -10.44 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.50 0.37 -69.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171134321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.321 kcal (2) G-P(sol) polarization free energy of solvation -69.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds