Wall clock time and date at job start Tue Mar 31 2020 14:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99709 * 2 1 4 4 C 1.50702 * 109.47281 * 293.95192 * 3 2 1 5 5 O 1.21405 * 119.99591 * 0.02562 * 4 3 2 6 6 C 1.41722 * 120.00392 * 179.97438 * 4 3 2 7 7 C 1.37869 * 126.90768 * 0.03363 * 6 4 3 8 8 N 1.34673 * 109.61748 * 179.97438 * 7 6 4 9 9 C 1.46493 * 124.64441 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47466 * 265.02480 * 9 8 7 11 11 H 1.08005 * 119.99907 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00249 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99825 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00143 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46845 * 90.00379 * 14 12 10 16 16 H 1.48498 * 109.47424 * 210.00359 * 14 12 10 17 17 H 1.48499 * 109.47399 * 330.00796 * 14 12 10 18 18 C 1.38021 * 110.70793 * 359.97438 * 8 7 6 19 19 C 1.39150 * 133.03542 * 180.02562 * 18 8 7 20 20 C 1.37769 * 119.94394 * 179.97438 * 19 18 8 21 21 C 1.38720 * 120.64166 * 359.97438 * 20 19 18 22 22 C 1.37798 * 120.26637 * 0.02562 * 21 20 19 23 23 C 1.39193 * 119.67525 * 359.64599 * 22 21 20 24 24 C 1.46898 * 110.99912 * 123.95268 * 2 1 3 25 25 C 1.53786 * 113.61243 * 170.82845 * 24 2 1 26 26 C 1.53775 * 87.17357 * 220.06176 * 25 24 2 27 27 C 1.53781 * 87.08111 * 25.38832 * 26 25 24 28 28 H 1.09000 * 109.47492 * 302.11552 * 1 2 3 29 29 H 1.08996 * 109.47067 * 62.12000 * 1 2 3 30 30 H 1.09003 * 109.46479 * 182.11316 * 1 2 3 31 31 H 1.08999 * 109.47306 * 53.95231 * 3 2 1 32 32 H 1.09000 * 109.47019 * 173.95340 * 3 2 1 33 33 H 1.07996 * 125.19011 * 359.95327 * 7 6 4 34 34 H 1.09001 * 109.47363 * 25.02335 * 9 8 7 35 35 H 1.09007 * 109.47352 * 145.01896 * 9 8 7 36 36 H 0.97002 * 120.00254 * 179.97438 * 13 12 10 37 37 H 1.07996 * 120.02538 * 0.02562 * 19 18 8 38 38 H 1.08001 * 119.67970 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.87062 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.16360 * 179.97438 * 22 21 20 41 41 H 1.08996 * 112.90726 * 302.07669 * 24 2 1 42 42 H 1.09005 * 113.60991 * 105.46760 * 25 24 2 43 43 H 1.09000 * 113.61690 * 334.65500 * 25 24 2 44 44 H 1.08993 * 113.61660 * 139.94519 * 26 25 24 45 45 H 1.09004 * 113.61077 * 270.84441 * 26 25 24 46 46 H 1.08997 * 113.60934 * 89.11691 * 27 26 25 47 47 H 1.08997 * 113.61855 * 219.93285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0040 1.4450 -2.1416 6 6 2.0375 3.3859 -1.5350 7 6 2.7549 4.1982 -0.6828 8 7 2.9434 5.4017 -1.2572 9 6 3.6651 6.5161 -0.6381 10 6 2.6837 7.4306 0.0486 11 1 1.6278 7.2045 0.0258 12 6 3.1336 8.5564 0.7051 13 7 2.2770 9.3548 1.3040 14 14 4.9596 8.9479 0.7441 15 1 5.3097 9.7933 -0.4256 16 1 5.2830 9.6773 1.9965 17 1 5.7380 7.6843 0.6921 18 6 2.3634 5.4412 -2.5090 19 6 2.2785 6.4289 -3.4855 20 6 1.6187 6.1724 -4.6674 21 6 1.0354 4.9350 -4.8974 22 6 1.1089 3.9443 -3.9425 23 6 1.7784 4.1880 -2.7468 24 6 1.9954 -0.7659 1.1376 25 6 3.5149 -0.9950 1.0757 26 6 3.2449 -2.4171 1.5947 27 6 1.8404 -2.2896 0.9814 28 1 -0.3634 0.5463 0.8704 29 1 -0.3633 0.4805 -0.9084 30 1 -0.3632 -1.0270 0.0379 31 1 1.5610 1.9274 0.8309 32 1 3.0797 1.3445 0.1083 33 1 3.1110 3.9132 0.2961 34 1 4.3737 6.1283 0.0938 35 1 4.2035 7.0717 -1.4060 36 1 2.5935 10.1467 1.7662 37 1 2.7302 7.3953 -3.3173 38 1 1.5551 6.9422 -5.4223 39 1 0.5208 4.7476 -5.8283 40 1 0.6537 2.9816 -4.1232 41 1 1.6497 -0.3882 2.0998 42 1 4.0786 -0.3753 1.7731 43 1 3.9195 -0.9689 0.0639 44 1 3.8614 -3.1799 1.1193 45 1 3.2413 -2.4916 2.6822 46 1 1.7859 -2.6175 -0.0566 47 1 1.0525 -2.7165 1.6020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174877015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:53 Heat of formation + Delta-G solvation = 51.194803 kcal Electronic energy + Delta-G solvation = -27228.316444 eV Core-core repulsion = 23570.420697 eV Total energy + Delta-G solvation = -3657.895747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08501 -39.61570 -38.23201 -36.72424 -34.79632 -33.58663 -32.06719 -29.93963 -29.65097 -28.21957 -27.27647 -26.07819 -25.41418 -23.58792 -22.80311 -22.30583 -21.27047 -20.33083 -19.43850 -18.51691 -17.32071 -16.83110 -16.24387 -16.05338 -15.57133 -15.19042 -15.10294 -14.81427 -14.62303 -14.39746 -13.91831 -13.60633 -13.53103 -13.33629 -13.12129 -12.80784 -12.69785 -12.53310 -12.19360 -12.10814 -11.88902 -11.76414 -11.64373 -11.53308 -11.23794 -11.06063 -10.97752 -10.86540 -10.65828 -10.45380 -10.35510 -10.24948 -9.81928 -9.12930 -9.07926 -8.95385 -8.29303 -7.80734 -7.18006 -6.43367 -4.49735 1.30345 1.93239 2.31288 3.01577 3.07251 3.10709 3.40854 3.64334 3.81104 4.05410 4.37988 4.40346 4.54108 4.66098 4.71241 4.79674 4.84196 5.07650 5.16243 5.25408 5.37793 5.42489 5.45199 5.49973 5.53681 5.59865 5.64258 5.65403 5.69195 5.73772 5.79272 5.94064 6.02001 6.05997 6.07513 6.15014 6.21612 6.24084 6.26429 6.33952 6.53012 6.86210 6.97730 7.01003 7.07130 7.12808 7.14503 7.25134 7.64558 7.67209 8.09971 8.24226 8.60552 9.10665 10.68564 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.003537 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.688495 B = 7914.091074 C = 9824.258361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.515 5.515 3 C 0.008 3.992 4 C 0.432 3.568 5 O -0.469 6.469 6 C -0.306 4.306 7 C 0.153 3.847 8 N -0.422 5.422 9 C 0.199 3.801 10 C -0.553 4.553 11 H 0.083 0.917 12 C 0.082 3.918 13 N -0.880 5.880 14 Si 0.873 3.127 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.086 3.914 19 C -0.102 4.102 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.081 4.081 23 C -0.057 4.057 24 C 0.049 3.951 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.019 0.981 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.174 0.826 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.271 0.729 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -16.182 -1.988 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.120 4.120 4 C 0.313 3.687 5 O -0.348 6.348 6 C -0.315 4.315 7 C 0.013 3.987 8 N -0.095 5.095 9 C 0.080 3.920 10 C -0.590 4.590 11 H 0.101 0.899 12 C -0.123 4.123 13 N -0.516 5.516 14 Si 0.699 3.301 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.018 4.018 19 C -0.122 4.122 20 C -0.139 4.139 21 C -0.161 4.161 22 C -0.099 4.099 23 C -0.060 4.060 24 C -0.059 4.059 25 C -0.169 4.169 26 C -0.180 4.180 27 C -0.163 4.163 28 H 0.038 0.962 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.191 0.809 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.272 -16.220 -2.607 16.584 hybrid contribution 0.677 1.111 1.229 1.789 sum 2.950 -15.109 -1.378 15.456 Atomic orbital electron populations 1.22504 0.86916 1.01719 1.01745 1.62058 1.08448 1.12246 1.41146 1.22462 1.02049 0.89654 0.97860 1.19774 0.76822 0.85154 0.86956 1.90441 1.32834 1.65821 1.45660 1.19633 1.16890 0.97427 0.97597 1.22510 0.94758 0.84343 0.97134 1.44154 1.41376 1.11639 1.12374 1.20272 0.93167 0.84334 0.94226 1.21141 0.95177 1.07711 1.34994 0.89889 1.24826 0.97948 0.95324 0.94238 1.69867 1.34509 1.13815 1.33431 0.86901 0.85097 0.79441 0.78662 1.19542 1.20382 1.18894 1.18296 1.00345 0.96035 0.87166 1.20179 1.01755 0.97833 0.92427 1.20709 0.99418 0.97165 0.96597 1.20868 1.02267 0.93725 0.99266 1.20497 0.98288 0.99298 0.91860 1.18824 1.00379 0.92431 0.94415 1.23259 0.96050 0.94292 0.92295 1.22991 0.95183 0.96626 1.02133 1.22711 0.97487 0.97480 1.00329 1.22961 0.96825 0.94706 1.01841 0.96243 0.89413 0.91783 0.91898 0.88006 0.80909 0.93215 0.93897 0.91898 0.85865 0.86181 0.86475 0.85708 0.91932 0.91638 0.89122 0.91198 0.90404 0.89173 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.15 60.06 0.55 0.79 16 2 N -0.52 -6.55 4.44 -235.24 -1.05 -7.60 16 3 C 0.01 0.11 4.65 -4.97 -0.02 0.08 16 4 C 0.43 7.07 6.69 -32.98 -0.22 6.85 16 5 O -0.47 -8.73 13.94 5.45 0.08 -8.65 16 6 C -0.31 -5.42 6.11 -104.88 -0.64 -6.07 16 7 C 0.15 2.61 10.71 -16.44 -0.18 2.43 16 8 N -0.42 -8.33 2.70 -115.28 -0.31 -8.64 16 9 C 0.20 4.20 4.75 -5.20 -0.02 4.17 16 10 C -0.55 -14.16 9.94 -34.44 -0.34 -14.51 16 11 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 12 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 13 N -0.88 -24.83 13.96 55.43 0.77 -24.05 16 14 Si 0.87 18.81 27.47 -169.99 -4.67 14.14 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 18 C 0.09 1.71 6.78 -83.95 -0.57 1.14 16 19 C -0.10 -1.88 9.96 -39.41 -0.39 -2.27 16 20 C -0.12 -1.90 10.01 -39.57 -0.40 -2.30 16 21 C -0.14 -2.22 10.03 -39.56 -0.40 -2.62 16 22 C -0.08 -1.43 9.80 -39.39 -0.39 -1.81 16 23 C -0.06 -1.10 6.24 -104.93 -0.65 -1.75 16 24 C 0.05 0.51 3.18 -66.81 -0.21 0.30 16 25 C -0.13 -1.21 6.77 -25.92 -0.18 -1.38 16 26 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 27 C -0.13 -1.14 7.26 -25.83 -0.19 -1.32 16 28 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 29 H 0.09 1.30 5.92 -51.93 -0.31 0.99 16 30 H 0.06 0.71 7.62 -51.93 -0.40 0.32 16 31 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 32 H 0.10 1.15 7.20 -51.93 -0.37 0.78 16 33 H 0.17 2.29 7.91 -52.49 -0.42 1.88 16 34 H 0.05 0.98 7.16 -51.93 -0.37 0.60 16 35 H 0.04 0.88 7.57 -51.93 -0.39 0.49 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.12 2.14 7.38 -52.48 -0.39 1.75 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -29.89 383.37 -11.26 -41.15 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.30 Total: 5.44 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -4.56 Total: -17.56 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.58 Total: -40.29 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.67 Total: 14.14 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.89 -11.26 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174877015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.346 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds