Wall clock time and date at job start Tue Mar 31 2020 14:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99709 * 2 1 4 4 C 1.50702 * 109.47281 * 293.95192 * 3 2 1 5 5 O 1.21405 * 119.99591 * 0.02562 * 4 3 2 6 6 C 1.41722 * 120.00392 * 179.97438 * 4 3 2 7 7 C 1.37869 * 126.90768 * 0.03363 * 6 4 3 8 8 N 1.34673 * 109.61748 * 179.97438 * 7 6 4 9 9 C 1.46493 * 124.64441 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47466 * 265.02480 * 9 8 7 11 11 H 1.08005 * 119.99907 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00249 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99825 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00143 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46845 * 90.00379 * 14 12 10 16 16 H 1.48498 * 109.47424 * 210.00359 * 14 12 10 17 17 H 1.48499 * 109.47399 * 330.00796 * 14 12 10 18 18 C 1.38021 * 110.70793 * 359.97438 * 8 7 6 19 19 C 1.39150 * 133.03542 * 180.02562 * 18 8 7 20 20 C 1.37769 * 119.94394 * 179.97438 * 19 18 8 21 21 C 1.38720 * 120.64166 * 359.97438 * 20 19 18 22 22 C 1.37798 * 120.26637 * 0.02562 * 21 20 19 23 23 C 1.39193 * 119.67525 * 359.64599 * 22 21 20 24 24 C 1.46898 * 110.99912 * 123.95268 * 2 1 3 25 25 C 1.53786 * 113.61243 * 170.82845 * 24 2 1 26 26 C 1.53775 * 87.17357 * 220.06176 * 25 24 2 27 27 C 1.53781 * 87.08111 * 25.38832 * 26 25 24 28 28 H 1.09000 * 109.47492 * 302.11552 * 1 2 3 29 29 H 1.08996 * 109.47067 * 62.12000 * 1 2 3 30 30 H 1.09003 * 109.46479 * 182.11316 * 1 2 3 31 31 H 1.08999 * 109.47306 * 53.95231 * 3 2 1 32 32 H 1.09000 * 109.47019 * 173.95340 * 3 2 1 33 33 H 1.07996 * 125.19011 * 359.95327 * 7 6 4 34 34 H 1.09001 * 109.47363 * 25.02335 * 9 8 7 35 35 H 1.09007 * 109.47352 * 145.01896 * 9 8 7 36 36 H 0.97002 * 120.00254 * 179.97438 * 13 12 10 37 37 H 1.07996 * 120.02538 * 0.02562 * 19 18 8 38 38 H 1.08001 * 119.67970 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.87062 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.16360 * 179.97438 * 22 21 20 41 41 H 1.08996 * 112.90726 * 302.07669 * 24 2 1 42 42 H 1.09005 * 113.60991 * 105.46760 * 25 24 2 43 43 H 1.09000 * 113.61690 * 334.65500 * 25 24 2 44 44 H 1.08993 * 113.61660 * 139.94519 * 26 25 24 45 45 H 1.09004 * 113.61077 * 270.84441 * 26 25 24 46 46 H 1.08997 * 113.60934 * 89.11691 * 27 26 25 47 47 H 1.08997 * 113.61855 * 219.93285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0040 1.4450 -2.1416 6 6 2.0375 3.3859 -1.5350 7 6 2.7549 4.1982 -0.6828 8 7 2.9434 5.4017 -1.2572 9 6 3.6651 6.5161 -0.6381 10 6 2.6837 7.4306 0.0486 11 1 1.6278 7.2045 0.0258 12 6 3.1336 8.5564 0.7051 13 7 2.2770 9.3548 1.3040 14 14 4.9596 8.9479 0.7441 15 1 5.3097 9.7933 -0.4256 16 1 5.2830 9.6773 1.9965 17 1 5.7380 7.6843 0.6921 18 6 2.3634 5.4412 -2.5090 19 6 2.2785 6.4289 -3.4855 20 6 1.6187 6.1724 -4.6674 21 6 1.0354 4.9350 -4.8974 22 6 1.1089 3.9443 -3.9425 23 6 1.7784 4.1880 -2.7468 24 6 1.9954 -0.7659 1.1376 25 6 3.5149 -0.9950 1.0757 26 6 3.2449 -2.4171 1.5947 27 6 1.8404 -2.2896 0.9814 28 1 -0.3634 0.5463 0.8704 29 1 -0.3633 0.4805 -0.9084 30 1 -0.3632 -1.0270 0.0379 31 1 1.5610 1.9274 0.8309 32 1 3.0797 1.3445 0.1083 33 1 3.1110 3.9132 0.2961 34 1 4.3737 6.1283 0.0938 35 1 4.2035 7.0717 -1.4060 36 1 2.5935 10.1467 1.7662 37 1 2.7302 7.3953 -3.3173 38 1 1.5551 6.9422 -5.4223 39 1 0.5208 4.7476 -5.8283 40 1 0.6537 2.9816 -4.1232 41 1 1.6497 -0.3882 2.0998 42 1 4.0786 -0.3753 1.7731 43 1 3.9195 -0.9689 0.0639 44 1 3.8614 -3.1799 1.1193 45 1 3.2413 -2.4916 2.6822 46 1 1.7859 -2.6175 -0.0566 47 1 1.0525 -2.7165 1.6020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174877015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:52 Heat of formation + Delta-G solvation = 35.858956 kcal Electronic energy + Delta-G solvation = -27228.981456 eV Core-core repulsion = 23570.420697 eV Total energy + Delta-G solvation = -3658.560759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46671 -40.58663 -39.33687 -38.09370 -35.75202 -35.38175 -33.69483 -31.42597 -30.90173 -29.68912 -28.53287 -27.02368 -26.17886 -25.12418 -24.10189 -23.50264 -22.45519 -21.80372 -20.19046 -19.82781 -19.26215 -18.11059 -17.50782 -17.13544 -16.69321 -16.45058 -16.34701 -16.04846 -15.87924 -15.67700 -15.27349 -14.95434 -14.80107 -14.62019 -14.50139 -14.36242 -13.79998 -13.71433 -13.42733 -13.26060 -13.19693 -12.78564 -12.68538 -12.62648 -12.55838 -12.51292 -12.40594 -11.88202 -11.86574 -11.74053 -11.71557 -11.37225 -11.06412 -10.92803 -10.50682 -10.36726 -9.26608 -9.18664 -8.59046 -8.42285 -6.55070 -0.03654 0.57987 0.94140 1.35123 1.35930 1.45393 1.97023 2.24426 2.32516 2.84194 2.90669 3.01703 3.46008 3.69468 3.76076 3.80666 3.85602 4.00636 4.07988 4.09367 4.22261 4.30453 4.36391 4.38584 4.54707 4.56068 4.59808 4.62463 4.64264 4.71127 4.72633 4.85785 4.91248 4.98378 4.99002 5.07923 5.12251 5.12623 5.19439 5.21250 5.37275 5.53725 5.55209 5.66223 5.75459 5.87214 5.94326 6.01270 6.24819 6.27905 6.35669 6.52000 6.96675 7.10392 8.73702 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.003537 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.688495 B = 7914.091074 C = 9824.258361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.529 5.529 3 C 0.016 3.984 4 C 0.431 3.569 5 O -0.497 6.497 6 C -0.318 4.318 7 C 0.157 3.843 8 N -0.438 5.438 9 C 0.208 3.792 10 C -0.555 4.555 11 H 0.028 0.972 12 C 0.024 3.976 13 N -0.936 5.936 14 Si 0.948 3.052 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.232 1.232 18 C 0.058 3.942 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.096 4.096 23 C -0.083 4.083 24 C 0.044 3.956 25 C -0.131 4.131 26 C -0.133 4.133 27 C -0.125 4.125 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.210 0.790 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.273 0.727 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -17.365 -1.848 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.253 5.253 3 C -0.112 4.112 4 C 0.314 3.686 5 O -0.377 6.377 6 C -0.327 4.327 7 C 0.018 3.982 8 N -0.113 5.113 9 C 0.088 3.912 10 C -0.593 4.593 11 H 0.046 0.954 12 C -0.177 4.177 13 N -0.574 5.574 14 Si 0.769 3.231 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.154 1.154 18 C -0.046 4.046 19 C -0.146 4.146 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.115 4.115 23 C -0.087 4.087 24 C -0.064 4.064 25 C -0.169 4.169 26 C -0.170 4.170 27 C -0.163 4.163 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.227 0.773 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.385 -17.444 -2.478 18.156 hybrid contribution -0.147 1.441 1.094 1.815 sum 4.238 -16.003 -1.384 16.612 Atomic orbital electron populations 1.22405 0.87306 1.02233 1.00531 1.62047 1.08303 1.12176 1.42782 1.22390 1.03263 0.89815 0.95777 1.20191 0.75829 0.84638 0.87944 1.90429 1.34043 1.66292 1.46970 1.19938 1.17116 0.98225 0.97445 1.23083 0.93828 0.83204 0.98109 1.44128 1.42364 1.12087 1.12714 1.20076 0.92303 0.84259 0.94538 1.21259 0.93656 1.08965 1.35371 0.95401 1.25818 1.03567 0.94826 0.93462 1.70036 1.37431 1.14807 1.35148 0.85724 0.78389 0.80486 0.78505 1.18991 1.20547 1.15431 1.18651 1.01321 0.96833 0.87774 1.20417 1.03083 0.97621 0.93490 1.21113 0.97662 0.98034 0.96235 1.21271 1.01172 0.92860 0.99908 1.20689 0.98652 0.99989 0.92165 1.19229 1.01022 0.92820 0.95619 1.23405 0.96874 0.94558 0.91573 1.22982 0.94287 0.97727 1.01889 1.22697 0.96457 0.96800 1.01079 1.22946 0.98084 0.93802 1.01474 0.95823 0.92050 0.90550 0.90877 0.85966 0.77307 0.90603 0.93054 0.91786 0.86307 0.82835 0.82955 0.85844 0.91352 0.90563 0.90239 0.90562 0.89059 0.90386 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.15 127.69 1.17 1.75 16 2 N -0.53 -12.93 4.44 -898.17 -3.99 -16.92 16 3 C 0.02 0.39 4.65 85.56 0.40 0.79 16 4 C 0.43 14.14 6.69 26.55 0.18 14.32 16 5 O -0.50 -18.91 13.94 -3.42 -0.05 -18.96 16 6 C -0.32 -11.32 6.11 -20.03 -0.12 -11.45 16 7 C 0.16 5.23 10.71 84.17 0.90 6.13 16 8 N -0.44 -17.25 2.70 -518.65 -1.40 -18.66 16 9 C 0.21 8.56 4.75 85.63 0.41 8.97 16 10 C -0.55 -29.03 9.94 25.60 0.25 -28.78 16 11 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 12 C 0.02 1.23 5.47 84.65 0.46 1.70 16 13 N -0.94 -54.41 13.96 21.45 0.30 -54.11 16 14 Si 0.95 37.86 27.47 68.60 1.88 39.75 16 15 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 16 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.23 -7.98 6.54 99.48 0.65 -7.33 16 18 C 0.06 2.34 6.78 38.90 0.26 2.60 16 19 C -0.13 -4.67 9.96 22.38 0.22 -4.45 16 20 C -0.11 -3.40 10.01 22.27 0.22 -3.17 16 21 C -0.13 -3.99 10.03 22.28 0.22 -3.76 16 22 C -0.10 -3.41 9.80 22.40 0.22 -3.19 16 23 C -0.08 -3.26 6.24 -20.06 -0.13 -3.39 16 24 C 0.04 0.82 3.18 45.50 0.14 0.96 16 25 C -0.13 -2.11 6.77 31.12 0.21 -1.90 16 26 C -0.13 -1.77 8.08 31.12 0.25 -1.52 16 27 C -0.13 -2.04 7.26 31.18 0.23 -1.82 16 28 H 0.02 0.55 8.12 -2.39 -0.02 0.53 16 29 H 0.06 1.86 5.92 -2.39 -0.01 1.85 16 30 H 0.08 1.66 7.62 -2.39 -0.02 1.64 16 31 H 0.07 1.67 8.11 -2.39 -0.02 1.65 16 32 H 0.12 2.50 7.20 -2.39 -0.02 2.48 16 33 H 0.21 5.07 7.91 -2.91 -0.02 5.05 16 34 H 0.08 2.74 7.16 -2.39 -0.02 2.72 16 35 H 0.05 2.03 7.57 -2.38 -0.02 2.02 16 36 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.12 4.32 7.38 -2.91 -0.02 4.29 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.50 383.37 3.15 -65.35 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.90 Total: 29.75 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 5.51 Total: -26.22 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -5.09 Total: -89.69 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.88 Total: 39.75 kcal Total: -68.50 3.15 -65.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174877015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.212 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds