Wall clock time and date at job start Tue Mar 31 2020 14:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99847 * 2 1 4 4 C 1.38729 * 120.05752 * 179.97438 * 3 2 1 5 5 C 1.38134 * 119.94581 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05878 * 0.02666 * 5 4 3 7 7 C 1.50698 * 119.94933 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47006 * 90.00010 * 7 6 5 9 9 N 1.46902 * 109.47164 * 179.30839 * 8 7 6 10 10 C 1.46904 * 110.99647 * 287.81977 * 9 8 7 11 11 C 1.50701 * 109.47048 * 298.76477 * 10 9 8 12 12 H 1.07995 * 120.00017 * 4.72314 * 11 10 9 13 13 C 1.37877 * 119.99917 * 184.71584 * 11 10 9 14 14 N 1.31515 * 119.99917 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99876 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47280 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47071 * 120.00737 * 15 13 11 18 18 H 1.48497 * 109.47023 * 240.00076 * 15 13 11 19 19 C 1.46898 * 111.00121 * 163.86808 * 9 8 7 20 20 C 1.50700 * 109.47143 * 189.99780 * 19 9 8 21 21 C 1.38225 * 119.61759 * 95.02131 * 20 19 9 22 22 C 1.38625 * 119.16052 * 179.74720 * 21 20 19 23 23 C 1.38679 * 118.41874 * 0.47373 * 22 21 20 24 24 C 1.38179 * 119.16301 * 359.50165 * 23 22 21 25 25 N 1.31857 * 119.61765 * 275.00177 * 20 19 9 26 26 C 1.38269 * 120.10880 * 0.25021 * 6 5 4 27 27 C 1.38149 * 120.05261 * 359.45081 * 26 6 5 28 28 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46796 * 299.99773 * 1 2 3 30 30 H 1.08999 * 109.47236 * 59.99438 * 1 2 3 31 31 H 1.08005 * 120.02272 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.97367 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.46884 * 330.00328 * 7 6 5 34 34 H 1.08999 * 109.47744 * 210.00114 * 7 6 5 35 35 H 1.08995 * 109.47016 * 59.30671 * 8 7 6 36 36 H 1.08998 * 109.46903 * 299.30250 * 8 7 6 37 37 H 1.09002 * 109.47119 * 58.76453 * 10 9 8 38 38 H 1.09003 * 109.47184 * 178.76710 * 10 9 8 39 39 H 0.97000 * 120.00299 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47148 * 69.99736 * 19 9 8 41 41 H 1.08999 * 109.47052 * 309.99784 * 19 9 8 42 42 H 1.08003 * 120.42155 * 359.95256 * 21 20 19 43 43 H 1.08005 * 120.79201 * 180.23155 * 22 21 20 44 44 H 1.08004 * 120.41672 * 179.78421 * 23 22 21 45 45 H 1.08003 * 119.61724 * 180.25380 * 24 23 22 46 46 H 1.08002 * 119.97045 * 179.70637 * 26 6 5 47 47 H 1.08001 * 120.02583 * 180.25046 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3019 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.2179 5.4740 -1.4394 9 7 4.8698 6.7905 -1.4383 10 6 3.9317 7.8421 -1.0235 11 6 2.7814 7.9010 -1.9953 12 1 2.7105 7.1761 -2.7926 13 6 1.8195 8.8804 -1.8664 14 7 1.9061 9.7634 -0.8956 15 14 0.3933 8.9530 -3.0706 16 1 0.5258 7.8550 -4.0615 17 1 -0.8862 8.8013 -2.3322 18 1 0.4063 10.2603 -3.7749 19 6 5.4501 7.0917 -2.7538 20 6 6.3135 8.3226 -2.6520 21 6 7.6739 8.1878 -2.4478 22 6 8.4600 9.3263 -2.3610 23 6 7.8441 10.5638 -2.4734 24 6 6.4786 10.6202 -2.6772 25 7 5.7625 9.5158 -2.7592 26 6 1.9210 3.6048 0.0069 27 6 1.2915 2.3751 0.0001 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0209 0.3800 0.0005 32 1 5.1345 2.5752 0.0011 33 1 4.9438 4.9380 0.5169 34 1 3.3578 5.7461 0.5169 35 1 3.2612 5.5428 -1.9570 36 1 4.8563 4.7530 -1.9498 37 1 3.5534 7.6187 -0.0259 38 1 4.4458 8.8032 -1.0103 39 1 1.2296 10.4527 -0.8051 40 1 4.6496 7.2678 -3.4723 41 1 6.0566 6.2488 -3.0850 42 1 8.1193 7.2078 -2.3604 43 1 9.5262 9.2515 -2.2055 44 1 8.4251 11.4718 -2.4070 45 1 5.9920 11.5799 -2.7698 46 1 1.3342 4.5114 0.0121 47 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178382199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:05 Heat of formation + Delta-G solvation = 29.993239 kcal Electronic energy + Delta-G solvation = -26938.277281 eV Core-core repulsion = 23279.462165 eV Total energy + Delta-G solvation = -3658.815116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03341 -39.68410 -37.82493 -36.57106 -32.68222 -32.39437 -31.84360 -30.95278 -30.73485 -28.22466 -27.10845 -26.85801 -24.66121 -23.29160 -22.91401 -22.48881 -21.71601 -20.54807 -19.50439 -18.07019 -16.56243 -16.21131 -16.09663 -15.75832 -15.67796 -15.44118 -15.03507 -14.74969 -14.51560 -14.03029 -13.96189 -13.59615 -13.35456 -13.12903 -12.96923 -12.72525 -12.58916 -12.24572 -12.19170 -11.93100 -11.79933 -11.24940 -11.17395 -10.99422 -10.84324 -10.71880 -10.66446 -10.61659 -10.21531 -10.03846 -9.88251 -9.50984 -9.31529 -8.83257 -8.67865 -8.52092 -8.26691 -7.88815 -7.13938 -5.89164 -3.93813 1.50925 1.57748 1.63067 1.78921 3.27750 3.32842 3.41214 3.43952 3.92563 4.28795 4.51459 4.86683 4.87094 4.99219 5.04398 5.06872 5.10094 5.18010 5.29006 5.33520 5.43724 5.44974 5.52174 5.54030 5.60245 5.62894 5.78384 5.85169 5.96117 6.03861 6.14897 6.17799 6.21650 6.32977 6.45673 6.47272 6.57308 6.57974 6.62239 6.76067 6.82661 6.96450 7.04451 7.18845 7.35075 7.45917 7.69284 8.02801 8.10457 8.33898 8.41008 8.70514 9.12322 9.70079 11.17382 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.003375 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.990625 B = 8294.874463 C =10298.173568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.110 3.890 4 C -0.153 4.153 5 C -0.081 4.081 6 C -0.100 4.100 7 C -0.070 4.070 8 C 0.068 3.932 9 N -0.539 5.539 10 C 0.184 3.816 11 C -0.529 4.529 12 H 0.053 0.947 13 C 0.071 3.929 14 N -0.889 5.889 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.285 1.285 19 C 0.105 3.895 20 C 0.156 3.844 21 C -0.166 4.166 22 C -0.086 4.086 23 C -0.190 4.190 24 C 0.099 3.901 25 N -0.442 5.442 26 C -0.072 4.072 27 C -0.206 4.206 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.024 0.976 38 H 0.048 0.952 39 H 0.258 0.742 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.148 0.852 46 H 0.130 0.870 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -11.514 0.417 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.237 6.237 3 C 0.065 3.935 4 C -0.172 4.172 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.108 4.108 8 C -0.061 4.061 9 N -0.263 5.263 10 C 0.058 3.942 11 C -0.568 4.568 12 H 0.071 0.929 13 C -0.131 4.131 14 N -0.529 5.529 15 Si 0.709 3.291 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.023 4.023 20 C 0.018 3.982 21 C -0.186 4.186 22 C -0.112 4.112 23 C -0.210 4.210 24 C -0.059 4.059 25 N -0.151 5.151 26 C -0.090 4.090 27 C -0.224 4.224 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.165 0.835 46 H 0.148 0.852 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.685 -11.510 0.699 12.856 hybrid contribution -0.967 0.419 -1.057 1.493 sum 4.718 -11.091 -0.358 12.058 Atomic orbital electron populations 1.23002 0.78763 1.03487 1.01419 1.86025 1.21103 1.27349 1.89218 1.18996 0.92392 0.83905 0.98164 1.20342 0.91212 0.98467 1.07192 1.20884 0.99779 0.90951 0.98273 1.19984 0.93507 0.95683 1.00918 1.20505 1.00053 0.92000 0.98201 1.21882 0.98425 0.90537 0.95216 1.62573 1.36256 1.03443 1.23993 1.19869 0.89123 0.90032 0.95152 1.21553 1.08474 1.13209 1.13566 0.92939 1.24812 0.97724 0.95441 0.95123 1.69949 1.34792 1.16641 1.31489 0.86731 0.82859 0.77876 0.81624 1.20074 1.21346 1.21112 1.20813 0.96476 0.91519 0.93519 1.21262 0.91083 0.93429 0.92447 1.21909 0.95020 0.99238 1.02468 1.21427 0.99739 0.92637 0.97440 1.22040 0.96717 0.98205 1.04036 1.22803 0.90627 0.97402 0.95028 1.67792 1.39141 0.97919 1.10217 1.21037 0.94449 0.97171 0.96384 1.21220 0.99789 0.92426 1.08995 0.88592 0.92766 0.92720 0.85712 0.85460 0.91277 0.90254 0.93113 0.93202 0.95829 0.93391 0.93268 0.91874 0.91639 0.85444 0.85737 0.85737 0.83472 0.85225 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.08 10.50 -19.44 -0.20 -4.29 16 3 C 0.11 1.52 6.69 -39.22 -0.26 1.25 16 4 C -0.15 -2.03 9.99 -39.44 -0.39 -2.43 16 5 C -0.08 -1.09 9.69 -39.61 -0.38 -1.47 16 6 C -0.10 -1.54 5.13 -104.60 -0.54 -2.07 16 7 C -0.07 -1.18 5.41 -27.88 -0.15 -1.33 16 8 C 0.07 1.25 4.79 -3.82 -0.02 1.24 16 9 N -0.54 -11.16 4.66 -237.51 -1.11 -12.27 16 10 C 0.18 4.63 4.71 -4.97 -0.02 4.61 16 11 C -0.53 -14.25 7.33 -34.44 -0.25 -14.51 16 12 H 0.05 1.42 5.95 -52.49 -0.31 1.11 16 13 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.88 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 C 0.11 2.04 5.09 -4.98 -0.03 2.01 16 20 C 0.16 2.99 5.70 -82.59 -0.47 2.52 16 21 C -0.17 -2.59 9.72 -39.44 -0.38 -2.97 16 22 C -0.09 -1.19 10.18 -39.28 -0.40 -1.59 16 23 C -0.19 -2.71 10.11 -39.44 -0.40 -3.10 16 24 C 0.10 1.74 11.18 -17.55 -0.20 1.54 16 25 N -0.44 -9.31 8.78 -9.47 -0.08 -9.40 16 26 C -0.07 -1.12 9.69 -39.60 -0.38 -1.50 16 27 C -0.21 -2.85 9.04 -39.43 -0.36 -3.21 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.07 1.09 8.08 -51.92 -0.42 0.67 16 34 H 0.08 1.52 6.67 -51.93 -0.35 1.17 16 35 H 0.05 1.07 6.17 -51.93 -0.32 0.75 16 36 H 0.05 0.82 7.81 -51.93 -0.41 0.42 16 37 H 0.02 0.64 6.65 -51.93 -0.35 0.30 16 38 H 0.05 1.34 6.19 -51.93 -0.32 1.02 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.06 1.39 6.57 -51.93 -0.34 1.04 16 41 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 42 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 44 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 45 H 0.15 2.32 8.06 -52.48 -0.42 1.89 16 46 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 47 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -31.80 384.13 -10.49 -42.29 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.86 Total: 4.49 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -3.74 Total: -17.88 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.45 Total: -47.10 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.80 -10.49 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178382199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.284 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds