Wall clock time and date at job start Tue Mar 31 2020 14:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99847 * 2 1 4 4 C 1.38729 * 120.05752 * 179.97438 * 3 2 1 5 5 C 1.38134 * 119.94581 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05878 * 0.02666 * 5 4 3 7 7 C 1.50698 * 119.94933 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47006 * 90.00010 * 7 6 5 9 9 N 1.46902 * 109.47164 * 179.30839 * 8 7 6 10 10 C 1.46904 * 110.99647 * 287.81977 * 9 8 7 11 11 C 1.50701 * 109.47048 * 298.76477 * 10 9 8 12 12 H 1.07995 * 120.00017 * 4.72314 * 11 10 9 13 13 C 1.37877 * 119.99917 * 184.71584 * 11 10 9 14 14 N 1.31515 * 119.99917 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99876 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47280 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47071 * 120.00737 * 15 13 11 18 18 H 1.48497 * 109.47023 * 240.00076 * 15 13 11 19 19 C 1.46898 * 111.00121 * 163.86808 * 9 8 7 20 20 C 1.50700 * 109.47143 * 189.99780 * 19 9 8 21 21 C 1.38225 * 119.61759 * 95.02131 * 20 19 9 22 22 C 1.38625 * 119.16052 * 179.74720 * 21 20 19 23 23 C 1.38679 * 118.41874 * 0.47373 * 22 21 20 24 24 C 1.38179 * 119.16301 * 359.50165 * 23 22 21 25 25 N 1.31857 * 119.61765 * 275.00177 * 20 19 9 26 26 C 1.38269 * 120.10880 * 0.25021 * 6 5 4 27 27 C 1.38149 * 120.05261 * 359.45081 * 26 6 5 28 28 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46796 * 299.99773 * 1 2 3 30 30 H 1.08999 * 109.47236 * 59.99438 * 1 2 3 31 31 H 1.08005 * 120.02272 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.97367 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.46884 * 330.00328 * 7 6 5 34 34 H 1.08999 * 109.47744 * 210.00114 * 7 6 5 35 35 H 1.08995 * 109.47016 * 59.30671 * 8 7 6 36 36 H 1.08998 * 109.46903 * 299.30250 * 8 7 6 37 37 H 1.09002 * 109.47119 * 58.76453 * 10 9 8 38 38 H 1.09003 * 109.47184 * 178.76710 * 10 9 8 39 39 H 0.97000 * 120.00299 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47148 * 69.99736 * 19 9 8 41 41 H 1.08999 * 109.47052 * 309.99784 * 19 9 8 42 42 H 1.08003 * 120.42155 * 359.95256 * 21 20 19 43 43 H 1.08005 * 120.79201 * 180.23155 * 22 21 20 44 44 H 1.08004 * 120.41672 * 179.78421 * 23 22 21 45 45 H 1.08003 * 119.61724 * 180.25380 * 24 23 22 46 46 H 1.08002 * 119.97045 * 179.70637 * 26 6 5 47 47 H 1.08001 * 120.02583 * 180.25046 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3019 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.2179 5.4740 -1.4394 9 7 4.8698 6.7905 -1.4383 10 6 3.9317 7.8421 -1.0235 11 6 2.7814 7.9010 -1.9953 12 1 2.7105 7.1761 -2.7926 13 6 1.8195 8.8804 -1.8664 14 7 1.9061 9.7634 -0.8956 15 14 0.3933 8.9530 -3.0706 16 1 0.5258 7.8550 -4.0615 17 1 -0.8862 8.8013 -2.3322 18 1 0.4063 10.2603 -3.7749 19 6 5.4501 7.0917 -2.7538 20 6 6.3135 8.3226 -2.6520 21 6 7.6739 8.1878 -2.4478 22 6 8.4600 9.3263 -2.3610 23 6 7.8441 10.5638 -2.4734 24 6 6.4786 10.6202 -2.6772 25 7 5.7625 9.5158 -2.7592 26 6 1.9210 3.6048 0.0069 27 6 1.2915 2.3751 0.0001 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0209 0.3800 0.0005 32 1 5.1345 2.5752 0.0011 33 1 4.9438 4.9380 0.5169 34 1 3.3578 5.7461 0.5169 35 1 3.2612 5.5428 -1.9570 36 1 4.8563 4.7530 -1.9498 37 1 3.5534 7.6187 -0.0259 38 1 4.4458 8.8032 -1.0103 39 1 1.2296 10.4527 -0.8051 40 1 4.6496 7.2678 -3.4723 41 1 6.0566 6.2488 -3.0850 42 1 8.1193 7.2078 -2.3604 43 1 9.5262 9.2515 -2.2055 44 1 8.4251 11.4718 -2.4070 45 1 5.9920 11.5799 -2.7698 46 1 1.3342 4.5114 0.0121 47 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178382199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:04 Heat of formation + Delta-G solvation = 11.083233 kcal Electronic energy + Delta-G solvation = -26939.097280 eV Core-core repulsion = 23279.462165 eV Total energy + Delta-G solvation = -3659.635115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09459 -40.95207 -39.03918 -38.02821 -34.57174 -33.86698 -33.09521 -32.16205 -31.95582 -29.42915 -28.89282 -27.89017 -26.27655 -24.96901 -24.18701 -23.57002 -22.97937 -21.79263 -21.19229 -19.05314 -18.48534 -17.51396 -17.19975 -17.06391 -16.81725 -16.69278 -16.59757 -16.18883 -15.90266 -15.56551 -15.11725 -14.88207 -14.62328 -14.44386 -14.25737 -14.13397 -13.86829 -13.67694 -13.57870 -13.07495 -13.04024 -12.77965 -12.75531 -12.58158 -12.41473 -12.26908 -12.12875 -11.88830 -11.80402 -11.66795 -11.62316 -11.38302 -10.62565 -10.46112 -9.99311 -9.91394 -9.79097 -9.03153 -8.90992 -8.04714 -6.17241 0.34527 0.43040 0.48732 0.60739 1.32511 1.34988 1.44472 2.40624 2.41602 2.79759 2.97595 3.23203 3.51946 3.74076 3.87735 3.97962 3.98850 4.14402 4.17178 4.25804 4.36790 4.37777 4.38223 4.43165 4.50411 4.54907 4.61998 4.66747 4.71616 4.76193 4.84007 4.89313 4.96985 5.07874 5.08738 5.20299 5.31633 5.37691 5.37807 5.40479 5.42243 5.46782 5.53609 5.82399 5.84873 5.90358 6.00454 6.16751 6.31804 6.47071 6.58675 6.99281 7.41479 7.49817 8.99370 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.003375 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.990625 B = 8294.874463 C =10298.173568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.108 3.892 4 C -0.155 4.155 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.057 4.057 8 C 0.072 3.928 9 N -0.532 5.532 10 C 0.205 3.795 11 C -0.524 4.524 12 H 0.046 0.954 13 C 0.019 3.981 14 N -0.924 5.924 15 Si 0.940 3.060 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.284 1.284 19 C 0.108 3.892 20 C 0.121 3.879 21 C -0.160 4.160 22 C -0.079 4.079 23 C -0.174 4.174 24 C 0.069 3.931 25 N -0.499 5.499 26 C -0.092 4.092 27 C -0.210 4.210 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.019 0.981 36 H 0.080 0.920 37 H -0.005 1.005 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.027 0.973 41 H 0.102 0.898 42 H 0.156 0.844 43 H 0.171 0.829 44 H 0.162 0.838 45 H 0.149 0.851 46 H 0.110 0.890 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.397 -13.582 -0.043 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.063 3.937 4 C -0.173 4.173 5 C -0.091 4.091 6 C -0.117 4.117 7 C -0.095 4.095 8 C -0.056 4.056 9 N -0.256 5.256 10 C 0.079 3.921 11 C -0.563 4.563 12 H 0.065 0.935 13 C -0.179 4.179 14 N -0.565 5.565 15 Si 0.767 3.233 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.210 1.210 19 C -0.020 4.020 20 C -0.017 4.017 21 C -0.181 4.181 22 C -0.105 4.105 23 C -0.194 4.194 24 C -0.088 4.088 25 N -0.209 5.209 26 C -0.111 4.111 27 C -0.228 4.228 28 H 0.141 0.859 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.098 0.902 37 H 0.013 0.987 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.120 0.880 42 H 0.174 0.826 43 H 0.188 0.812 44 H 0.180 0.820 45 H 0.166 0.834 46 H 0.128 0.872 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.859 -13.597 0.229 15.707 hybrid contribution -1.595 1.004 -0.913 2.095 sum 6.263 -12.593 -0.683 14.081 Atomic orbital electron populations 1.23300 0.76875 1.05495 1.01882 1.86021 1.23088 1.26588 1.88910 1.19187 0.92929 0.84211 0.97414 1.20661 0.91313 0.99181 1.06169 1.21084 1.00889 0.90138 0.97030 1.19873 0.93508 0.95487 1.02791 1.20317 1.00172 0.92228 0.96784 1.21923 0.97292 0.90040 0.96354 1.62506 1.34757 1.03056 1.25255 1.19388 0.89051 0.90261 0.93433 1.21741 1.08809 1.12513 1.13217 0.93542 1.25540 1.00279 0.95361 0.96746 1.70069 1.35824 1.17444 1.33209 0.85783 0.80115 0.77742 0.79660 1.19591 1.20555 1.21030 1.20877 0.96037 0.93631 0.91504 1.21304 0.92749 0.92568 0.95043 1.22185 0.93487 1.01459 1.00924 1.21958 1.01730 0.91456 0.95336 1.22403 0.95319 1.00290 1.01400 1.23030 0.92515 0.96704 0.96579 1.67606 1.41574 0.99506 1.12215 1.21011 0.94820 0.97301 0.97930 1.21340 1.00754 0.91923 1.08797 0.85910 0.92151 0.92404 0.83399 0.82968 0.89818 0.93767 0.96235 0.90153 0.98661 0.96163 0.93301 0.95507 0.87954 0.82626 0.81199 0.81997 0.83413 0.87169 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.70 10.50 -92.48 -0.97 -8.67 16 3 C 0.11 2.80 6.69 22.50 0.15 2.95 16 4 C -0.15 -3.74 9.99 22.36 0.22 -3.51 16 5 C -0.07 -1.84 9.69 22.25 0.22 -1.63 16 6 C -0.12 -3.56 5.13 -19.85 -0.10 -3.66 16 7 C -0.06 -1.98 5.41 29.85 0.16 -1.82 16 8 C 0.07 2.71 4.79 86.30 0.41 3.12 16 9 N -0.53 -22.67 4.66 -905.35 -4.22 -26.88 16 10 C 0.21 10.98 4.71 85.56 0.40 11.39 16 11 C -0.52 -29.75 7.33 25.60 0.19 -29.56 16 12 H 0.05 2.65 5.95 -2.91 -0.02 2.63 16 13 C 0.02 1.12 5.46 84.65 0.46 1.59 16 14 N -0.92 -56.97 13.29 21.45 0.28 -56.69 16 15 Si 0.94 46.26 29.54 68.60 2.03 48.29 16 16 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 19 C 0.11 4.24 5.09 85.56 0.44 4.67 16 20 C 0.12 4.66 5.70 42.55 0.24 4.90 16 21 C -0.16 -4.62 9.72 22.36 0.22 -4.40 16 22 C -0.08 -1.89 10.18 22.47 0.23 -1.66 16 23 C -0.17 -4.56 10.11 22.36 0.23 -4.34 16 24 C 0.07 2.45 11.18 84.67 0.95 3.40 16 25 N -0.50 -21.86 8.78 -183.89 -1.61 -23.48 16 26 C -0.09 -2.95 9.69 22.26 0.22 -2.74 16 27 C -0.21 -5.75 9.04 22.37 0.20 -5.55 16 28 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 30 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.08 2.61 8.08 -2.38 -0.02 2.59 16 34 H 0.04 1.82 6.67 -2.39 -0.02 1.80 16 35 H 0.02 0.85 6.17 -2.39 -0.01 0.84 16 36 H 0.08 2.53 7.81 -2.39 -0.02 2.51 16 37 H 0.00 -0.27 6.65 -2.39 -0.02 -0.28 16 38 H 0.02 1.21 6.19 -2.39 -0.01 1.19 16 39 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.03 1.23 6.57 -2.39 -0.02 1.22 16 41 H 0.10 3.16 7.76 -2.39 -0.02 3.14 16 42 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.11 3.84 8.06 -2.91 -0.02 3.81 16 47 H 0.14 3.22 6.30 -2.91 -0.02 3.20 16 Total: -1.00 -73.90 384.13 2.41 -71.49 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.96 Total: 21.38 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 5.94 Total: -25.44 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -5.55 Total: -107.05 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.97 Total: -8.67 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.90 2.41 -71.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178382199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.572 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds