Wall clock time and date at job start Tue Mar 31 2020 14:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00018 * 2 1 4 4 C 1.50704 * 109.47054 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00214 * 274.34503 * 4 3 2 6 6 C 1.38218 * 119.99926 * 179.97438 * 5 4 3 7 7 C 1.38248 * 120.00094 * 359.81492 * 6 5 4 8 8 C 1.38220 * 119.99834 * 0.41619 * 7 6 5 9 9 C 1.50702 * 119.99950 * 179.81520 * 8 7 6 10 10 N 1.46906 * 109.46704 * 264.51679 * 9 8 7 11 11 C 1.46902 * 110.99672 * 199.00041 * 10 9 8 12 12 C 1.50694 * 109.47567 * 71.02766 * 11 10 9 13 13 H 1.08001 * 120.00011 * 3.37477 * 12 11 10 14 14 C 1.37880 * 120.00165 * 183.37446 * 12 11 10 15 15 N 1.31517 * 119.99903 * 354.07741 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 174.07821 * 14 12 11 17 17 H 1.48500 * 109.47347 * 65.00037 * 16 14 12 18 18 H 1.48505 * 109.46961 * 185.00304 * 16 14 12 19 19 H 1.48501 * 109.47065 * 304.99832 * 16 14 12 20 20 C 1.46894 * 111.00236 * 75.04255 * 10 9 8 21 21 C 1.50704 * 109.46929 * 189.99759 * 20 10 9 22 22 C 1.38678 * 120.41461 * 89.99978 * 21 20 10 23 23 C 1.38632 * 118.41544 * 179.97438 * 22 21 20 24 24 C 1.38224 * 119.16224 * 0.25894 * 23 22 21 25 25 N 1.31856 * 120.76508 * 359.49150 * 24 23 22 26 26 C 1.31888 * 121.72322 * 0.49709 * 25 24 23 27 27 C 1.38213 * 119.99913 * 94.32225 * 4 3 2 28 28 H 1.09007 * 109.47044 * 59.99729 * 1 2 3 29 29 H 1.08990 * 109.47416 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46714 * 299.99975 * 1 2 3 31 31 H 1.09002 * 109.47150 * 60.00108 * 3 2 1 32 32 H 1.09001 * 109.47321 * 300.00011 * 3 2 1 33 33 H 1.07998 * 119.99775 * 0.02562 * 5 4 3 34 34 H 1.07997 * 119.99473 * 180.02562 * 6 5 4 35 35 H 1.07993 * 120.00280 * 180.23382 * 7 6 5 36 36 H 1.08998 * 109.47712 * 144.51467 * 9 8 7 37 37 H 1.09003 * 109.47220 * 24.50702 * 9 8 7 38 38 H 1.08995 * 109.47138 * 191.03456 * 11 10 9 39 39 H 1.09007 * 109.46774 * 311.02518 * 11 10 9 40 40 H 0.96996 * 120.00092 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.47150 * 70.00333 * 20 10 9 42 42 H 1.08999 * 109.47333 * 309.99405 * 20 10 9 43 43 H 1.07989 * 120.79168 * 359.95397 * 22 21 20 44 44 H 1.07998 * 120.41743 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.61624 * 179.74644 * 24 23 22 46 46 H 1.07995 * 119.61394 * 179.74903 * 26 25 24 47 47 H 1.08006 * 120.00030 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1941 1.0416 1.1948 6 6 5.5719 0.9320 1.1953 7 6 6.2682 0.9632 0.0014 8 6 5.5873 1.1128 -1.1921 9 6 6.3467 1.1510 -2.4932 10 7 6.5934 2.5479 -2.8752 11 6 6.9122 2.6541 -4.3053 12 6 5.6716 2.3869 -5.1178 13 1 4.7278 2.2147 -4.6217 14 6 5.7412 2.3624 -6.4946 15 7 6.8617 2.6862 -7.1023 16 14 4.2439 1.8691 -7.4969 17 1 3.1666 2.8728 -7.3040 18 1 4.6098 1.8057 -8.9347 19 1 3.7653 0.5367 -7.0487 20 6 7.6581 3.1383 -2.0532 21 6 7.7164 4.6241 -2.2982 22 6 6.9607 5.4932 -1.5256 23 6 7.0464 6.8521 -1.7863 24 6 7.8719 7.2920 -2.8039 25 7 8.5799 6.4368 -3.5154 26 6 8.5236 5.1377 -3.2951 27 6 4.2091 1.2216 -1.1926 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.6498 1.0134 2.1272 34 1 6.1041 0.8184 2.1281 35 1 7.3444 0.8737 0.0014 36 1 5.7611 0.6598 -3.2704 37 1 7.2986 0.6335 -2.3737 38 1 7.2796 3.6571 -4.5221 39 1 7.6791 1.9231 -4.5618 40 1 6.9106 2.6693 -8.0709 41 1 8.6145 2.6884 -2.3195 42 1 7.4495 2.9517 -0.9997 43 1 6.3207 5.1203 -0.7398 44 1 6.4717 7.5578 -1.2047 45 1 7.9411 8.3487 -3.0161 46 1 9.1151 4.4676 -3.9011 47 1 3.6767 1.3348 -2.1255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179230476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:35 Heat of formation + Delta-G solvation = 20.375464 kcal Electronic energy + Delta-G solvation = -27266.488186 eV Core-core repulsion = 23607.256012 eV Total energy + Delta-G solvation = -3659.232174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.87211 -39.38950 -37.72050 -36.53758 -32.81751 -32.59705 -31.80636 -31.45915 -30.48412 -27.56959 -27.19741 -26.17955 -25.30035 -24.05657 -23.18339 -21.97204 -21.89834 -20.61671 -19.77536 -16.68012 -16.56738 -16.52591 -16.34135 -16.01082 -15.77630 -15.48190 -15.21664 -14.74333 -14.66104 -14.42847 -14.00334 -13.63572 -13.44369 -13.10064 -12.67347 -12.63085 -12.55459 -12.41336 -12.31732 -12.12430 -11.83694 -11.55212 -11.42063 -11.25279 -11.01591 -10.85169 -10.71520 -10.61377 -10.32339 -9.94858 -9.77876 -9.43158 -9.26711 -9.01624 -8.63992 -8.60571 -8.41494 -8.36275 -7.35298 -6.03806 -4.04100 1.44240 1.51692 1.65928 1.72242 3.32209 3.36966 3.39116 3.64143 4.14239 4.24468 4.42829 4.84496 4.88159 4.91373 5.04086 5.14651 5.17113 5.18418 5.20629 5.28118 5.29652 5.31537 5.35957 5.38569 5.46014 5.50688 5.52123 5.69001 5.72002 5.77411 5.90965 5.97027 6.10689 6.18832 6.20535 6.32331 6.46479 6.50919 6.62870 6.72913 6.74929 6.92994 7.04524 7.10387 7.19783 7.25668 7.26025 7.78469 8.02769 8.11808 8.39776 8.48577 9.01872 9.59347 11.06722 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.007699 B = 0.004568 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.839155 B = 6127.660257 C = 8391.533612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.104 3.896 4 C -0.097 4.097 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.113 4.113 8 C -0.061 4.061 9 C 0.096 3.904 10 N -0.523 5.523 11 C 0.186 3.814 12 C -0.508 4.508 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.092 3.908 21 C -0.110 4.110 22 C -0.058 4.058 23 C -0.181 4.181 24 C 0.086 3.914 25 N -0.486 5.486 26 C 0.118 3.882 27 C -0.072 4.072 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.040 0.960 39 H -0.007 1.007 40 H 0.262 0.738 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.148 0.852 46 H 0.153 0.847 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 0.084 17.085 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.028 3.972 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.146 4.146 7 C -0.132 4.132 8 C -0.062 4.062 9 C -0.032 4.032 10 N -0.248 5.248 11 C 0.062 3.938 12 C -0.547 4.547 13 H 0.080 0.920 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.036 4.036 21 C -0.113 4.113 22 C -0.085 4.085 23 C -0.201 4.201 24 C -0.071 4.071 25 N -0.195 5.195 26 C -0.039 4.039 27 C -0.091 4.091 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.165 0.835 46 H 0.170 0.830 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.216 0.518 16.288 16.832 hybrid contribution -0.932 -0.712 -0.178 1.186 sum -5.148 -0.193 16.110 16.913 Atomic orbital electron populations 1.22740 0.81304 1.02661 0.99919 1.87980 1.19341 1.27735 1.95385 1.21353 0.90272 0.84835 1.00748 1.19508 0.93569 1.02921 0.93748 1.20877 0.94294 1.00380 0.97106 1.20990 0.94103 1.01736 0.97744 1.21108 0.99545 1.00309 0.92208 1.20038 0.93795 0.97169 0.95190 1.21013 0.97770 0.90713 0.93670 1.62147 1.40566 1.15037 1.07018 1.19903 0.96364 0.97276 0.80279 1.21047 0.94945 1.48184 0.90480 0.92011 1.24954 0.96065 0.95475 0.97845 1.69946 1.26090 1.47957 1.09302 0.86637 0.83090 0.79159 0.79018 1.20371 1.21338 1.20148 1.20986 0.94272 0.89801 0.98560 1.20760 0.97130 0.96722 0.96666 1.21362 0.96034 0.92759 0.98347 1.22018 1.01379 0.96362 1.00365 1.22631 0.93059 0.99339 0.92040 1.67671 1.21863 1.03760 1.26174 1.22713 0.96028 0.91390 0.93813 1.20994 0.93870 0.96837 0.97358 0.93949 0.89717 0.94267 0.92770 0.92234 0.86703 0.86475 0.86510 0.88479 0.94959 0.94201 0.98943 0.92847 0.94694 0.90793 0.85375 0.85494 0.83507 0.83000 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.09 10.69 -35.23 -0.38 -5.46 16 3 C 0.10 1.28 6.06 36.01 0.22 1.50 16 4 C -0.10 -1.37 5.51 -104.62 -0.58 -1.94 16 5 C -0.11 -1.37 9.72 -39.58 -0.38 -1.75 16 6 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 7 C -0.11 -1.54 8.37 -39.58 -0.33 -1.87 16 8 C -0.06 -0.97 5.02 -104.62 -0.52 -1.50 16 9 C 0.10 1.75 4.97 -4.97 -0.02 1.72 16 10 N -0.52 -10.50 4.37 -238.96 -1.04 -11.55 16 11 C 0.19 4.60 4.57 -4.98 -0.02 4.58 16 12 C -0.51 -13.81 8.27 -34.44 -0.28 -14.09 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.63 5.45 -17.82 -0.10 1.53 16 15 N -0.89 -26.18 13.30 55.43 0.74 -25.44 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.09 1.57 4.97 -4.98 -0.02 1.55 16 21 C -0.11 -1.93 4.94 -104.48 -0.52 -2.44 16 22 C -0.06 -0.91 9.86 -39.27 -0.39 -1.30 16 23 C -0.18 -2.57 10.11 -39.44 -0.40 -2.97 16 24 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 25 N -0.49 -9.03 10.36 -13.26 -0.14 -9.17 16 26 C 0.12 2.21 9.03 -17.55 -0.16 2.05 16 27 C -0.07 -1.15 9.36 -39.59 -0.37 -1.52 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.42 7.99 -52.49 -0.42 1.00 16 36 H 0.10 1.97 7.01 -51.93 -0.36 1.61 16 37 H 0.03 0.55 7.92 -51.93 -0.41 0.14 16 38 H 0.04 1.06 5.19 -51.93 -0.27 0.79 16 39 H -0.01 -0.19 8.07 -51.92 -0.42 -0.61 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 42 H 0.07 1.12 6.24 -51.93 -0.32 0.80 16 43 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 46 H 0.15 2.88 7.75 -52.49 -0.41 2.48 16 47 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -31.43 391.26 -10.53 -41.96 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.22 Total: 3.16 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -3.37 Total: -15.88 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.45 Total: -46.16 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.38 Total: -5.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.43 -10.53 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179230476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.340 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds