Wall clock time and date at job start Tue Mar 31 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00018 * 2 1 4 4 C 1.50704 * 109.47054 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00214 * 274.34503 * 4 3 2 6 6 C 1.38218 * 119.99926 * 179.97438 * 5 4 3 7 7 C 1.38248 * 120.00094 * 359.81492 * 6 5 4 8 8 C 1.38220 * 119.99834 * 0.41619 * 7 6 5 9 9 C 1.50702 * 119.99950 * 179.81520 * 8 7 6 10 10 N 1.46906 * 109.46704 * 264.51679 * 9 8 7 11 11 C 1.46902 * 110.99672 * 199.00041 * 10 9 8 12 12 C 1.50694 * 109.47567 * 71.02766 * 11 10 9 13 13 H 1.08001 * 120.00011 * 3.37477 * 12 11 10 14 14 C 1.37880 * 120.00165 * 183.37446 * 12 11 10 15 15 N 1.31517 * 119.99903 * 354.07741 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 174.07821 * 14 12 11 17 17 H 1.48500 * 109.47347 * 65.00037 * 16 14 12 18 18 H 1.48505 * 109.46961 * 185.00304 * 16 14 12 19 19 H 1.48501 * 109.47065 * 304.99832 * 16 14 12 20 20 C 1.46894 * 111.00236 * 75.04255 * 10 9 8 21 21 C 1.50704 * 109.46929 * 189.99759 * 20 10 9 22 22 C 1.38678 * 120.41461 * 89.99978 * 21 20 10 23 23 C 1.38632 * 118.41544 * 179.97438 * 22 21 20 24 24 C 1.38224 * 119.16224 * 0.25894 * 23 22 21 25 25 N 1.31856 * 120.76508 * 359.49150 * 24 23 22 26 26 C 1.31888 * 121.72322 * 0.49709 * 25 24 23 27 27 C 1.38213 * 119.99913 * 94.32225 * 4 3 2 28 28 H 1.09007 * 109.47044 * 59.99729 * 1 2 3 29 29 H 1.08990 * 109.47416 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46714 * 299.99975 * 1 2 3 31 31 H 1.09002 * 109.47150 * 60.00108 * 3 2 1 32 32 H 1.09001 * 109.47321 * 300.00011 * 3 2 1 33 33 H 1.07998 * 119.99775 * 0.02562 * 5 4 3 34 34 H 1.07997 * 119.99473 * 180.02562 * 6 5 4 35 35 H 1.07993 * 120.00280 * 180.23382 * 7 6 5 36 36 H 1.08998 * 109.47712 * 144.51467 * 9 8 7 37 37 H 1.09003 * 109.47220 * 24.50702 * 9 8 7 38 38 H 1.08995 * 109.47138 * 191.03456 * 11 10 9 39 39 H 1.09007 * 109.46774 * 311.02518 * 11 10 9 40 40 H 0.96996 * 120.00092 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.47150 * 70.00333 * 20 10 9 42 42 H 1.08999 * 109.47333 * 309.99405 * 20 10 9 43 43 H 1.07989 * 120.79168 * 359.95397 * 22 21 20 44 44 H 1.07998 * 120.41743 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.61624 * 179.74644 * 24 23 22 46 46 H 1.07995 * 119.61394 * 179.74903 * 26 25 24 47 47 H 1.08006 * 120.00030 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1941 1.0416 1.1948 6 6 5.5719 0.9320 1.1953 7 6 6.2682 0.9632 0.0014 8 6 5.5873 1.1128 -1.1921 9 6 6.3467 1.1510 -2.4932 10 7 6.5934 2.5479 -2.8752 11 6 6.9122 2.6541 -4.3053 12 6 5.6716 2.3869 -5.1178 13 1 4.7278 2.2147 -4.6217 14 6 5.7412 2.3624 -6.4946 15 7 6.8617 2.6862 -7.1023 16 14 4.2439 1.8691 -7.4969 17 1 3.1666 2.8728 -7.3040 18 1 4.6098 1.8057 -8.9347 19 1 3.7653 0.5367 -7.0487 20 6 7.6581 3.1383 -2.0532 21 6 7.7164 4.6241 -2.2982 22 6 6.9607 5.4932 -1.5256 23 6 7.0464 6.8521 -1.7863 24 6 7.8719 7.2920 -2.8039 25 7 8.5799 6.4368 -3.5154 26 6 8.5236 5.1377 -3.2951 27 6 4.2091 1.2216 -1.1926 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.6498 1.0134 2.1272 34 1 6.1041 0.8184 2.1281 35 1 7.3444 0.8737 0.0014 36 1 5.7611 0.6598 -3.2704 37 1 7.2986 0.6335 -2.3737 38 1 7.2796 3.6571 -4.5221 39 1 7.6791 1.9231 -4.5618 40 1 6.9106 2.6693 -8.0709 41 1 8.6145 2.6884 -2.3195 42 1 7.4495 2.9517 -0.9997 43 1 6.3207 5.1203 -0.7398 44 1 6.4717 7.5578 -1.2047 45 1 7.9411 8.3487 -3.0161 46 1 9.1151 4.4676 -3.9011 47 1 3.6767 1.3348 -2.1255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179230476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:34 Heat of formation + Delta-G solvation = 1.653676 kcal Electronic energy + Delta-G solvation = -27267.300023 eV Core-core repulsion = 23607.256012 eV Total energy + Delta-G solvation = -3660.044011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16772 -40.49060 -38.76757 -37.93080 -34.83175 -33.86855 -33.03823 -32.59145 -31.81384 -29.32971 -28.15729 -27.51263 -26.20179 -25.77533 -24.47534 -23.53291 -23.00380 -21.87779 -21.17304 -18.57414 -17.92546 -17.56327 -17.26955 -17.21735 -16.99068 -16.76048 -16.56701 -16.24324 -16.03805 -15.59405 -15.42549 -14.88244 -14.76843 -14.42464 -14.16045 -13.96126 -13.82963 -13.61691 -13.42835 -13.29533 -13.18398 -13.10342 -12.82824 -12.60014 -12.55712 -12.36181 -12.24661 -12.03370 -11.74780 -11.63383 -11.33501 -10.66306 -10.64091 -10.56652 -10.31891 -9.87322 -9.68984 -9.55295 -9.01463 -8.19737 -6.27223 0.23003 0.40194 0.45116 0.57232 1.37113 1.39080 1.47135 2.38077 2.65192 2.89687 3.12842 3.21818 3.57849 3.61221 3.85144 3.90485 3.94711 3.99684 4.12653 4.17605 4.21188 4.28632 4.32076 4.38421 4.46608 4.54394 4.56483 4.57685 4.60640 4.66090 4.79865 4.85778 4.86398 4.87583 4.92804 5.15672 5.18486 5.21579 5.24441 5.31036 5.45583 5.59460 5.66391 5.69822 5.82451 5.87064 6.08725 6.14505 6.22574 6.32157 6.60121 6.87187 7.10663 7.40749 8.90406 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.007699 B = 0.004568 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.839155 B = 6127.660257 C = 8391.533612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.104 3.896 4 C -0.104 4.104 5 C -0.104 4.104 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.076 4.076 9 C 0.102 3.898 10 N -0.526 5.526 11 C 0.204 3.796 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.957 3.043 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.097 3.903 21 C -0.125 4.125 22 C -0.062 4.062 23 C -0.167 4.167 24 C 0.077 3.923 25 N -0.517 5.517 26 C 0.092 3.908 27 C -0.095 4.095 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.020 0.980 39 H -0.038 1.038 40 H 0.262 0.738 41 H 0.031 0.969 42 H 0.100 0.900 43 H 0.150 0.850 44 H 0.170 0.830 45 H 0.180 0.820 46 H 0.130 0.870 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 0.743 20.439 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.028 3.972 4 C -0.104 4.104 5 C -0.122 4.122 6 C -0.135 4.135 7 C -0.133 4.133 8 C -0.077 4.077 9 C -0.026 4.026 10 N -0.249 5.249 11 C 0.078 3.922 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.030 4.030 21 C -0.127 4.127 22 C -0.088 4.088 23 C -0.186 4.186 24 C -0.080 4.080 25 N -0.226 5.226 26 C -0.065 4.065 27 C -0.113 4.113 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.038 0.962 39 H -0.020 1.020 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.118 0.882 43 H 0.168 0.832 44 H 0.188 0.812 45 H 0.197 0.803 46 H 0.147 0.853 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.078 1.162 19.663 20.614 hybrid contribution -0.383 -0.875 -1.114 1.468 sum -6.460 0.287 18.549 19.644 Atomic orbital electron populations 1.22941 0.79473 1.03798 1.00955 1.87929 1.21436 1.28227 1.95598 1.21387 0.89295 0.84844 1.01665 1.19730 0.94677 1.02458 0.93504 1.21249 0.94726 0.98733 0.97484 1.21370 0.94110 0.99685 0.98366 1.21267 1.00403 0.99824 0.91773 1.19787 0.93683 0.99551 0.94665 1.20883 0.97894 0.89386 0.94411 1.62051 1.41707 1.16486 1.04702 1.19500 0.94451 0.95014 0.83266 1.21362 0.95553 1.47584 0.91128 0.92429 1.25790 0.98929 0.95447 0.99066 1.70079 1.28178 1.49221 1.09487 0.85620 0.79592 0.79130 0.77434 1.19742 1.20860 1.19240 1.21018 0.93152 0.89726 0.99152 1.20804 0.97769 0.97026 0.97101 1.21692 0.95526 0.93293 0.98314 1.22461 1.00214 0.96466 0.99495 1.23279 0.92435 1.00414 0.91832 1.67612 1.23471 1.03922 1.27634 1.22519 0.97373 0.91741 0.94860 1.20909 0.94088 0.98874 0.97474 0.93804 0.88630 0.92299 0.90189 0.92932 0.83859 0.82985 0.84998 0.91720 0.94346 0.96208 1.02007 0.92871 0.95039 0.88161 0.83222 0.81213 0.80275 0.85259 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.65 16 2 O -0.41 -10.27 10.69 -148.98 -1.59 -11.86 16 3 C 0.10 2.39 6.06 71.24 0.43 2.82 16 4 C -0.10 -2.75 5.51 -19.86 -0.11 -2.86 16 5 C -0.10 -2.25 9.72 22.27 0.22 -2.03 16 6 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 7 C -0.11 -2.86 8.37 22.27 0.19 -2.67 16 8 C -0.08 -2.42 5.02 -19.86 -0.10 -2.52 16 9 C 0.10 3.88 4.97 85.56 0.42 4.30 16 10 N -0.53 -21.99 4.37 -909.94 -3.98 -25.97 16 11 C 0.20 10.71 4.57 85.55 0.39 11.10 16 12 C -0.52 -29.50 8.27 25.60 0.21 -29.29 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 14 C 0.01 0.35 5.45 84.65 0.46 0.81 16 15 N -0.93 -56.74 13.30 21.45 0.29 -56.46 16 16 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 C 0.10 3.38 4.97 85.56 0.43 3.81 16 21 C -0.12 -4.40 4.94 -19.77 -0.10 -4.50 16 22 C -0.06 -1.81 9.86 22.47 0.22 -1.59 16 23 C -0.17 -4.25 10.11 22.36 0.23 -4.02 16 24 C 0.08 2.28 11.18 84.69 0.95 3.22 16 25 N -0.52 -19.63 10.36 -195.85 -2.03 -21.66 16 26 C 0.09 3.62 9.03 84.67 0.76 4.39 16 27 C -0.09 -3.06 9.36 22.27 0.21 -2.85 16 28 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.39 8.11 -2.39 -0.02 1.37 16 32 H 0.05 1.24 8.06 -2.39 -0.02 1.22 16 33 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.13 2.86 7.99 -2.91 -0.02 2.84 16 36 H 0.06 2.84 7.01 -2.39 -0.02 2.82 16 37 H 0.04 1.38 7.92 -2.39 -0.02 1.36 16 38 H 0.02 1.13 5.19 -2.39 -0.01 1.12 16 39 H -0.04 -2.16 8.07 -2.38 -0.02 -2.18 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.03 1.10 8.07 -2.39 -0.02 1.09 16 42 H 0.10 2.92 6.24 -2.39 -0.01 2.90 16 43 H 0.15 3.68 8.06 -2.92 -0.02 3.66 16 44 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 45 H 0.18 3.91 8.06 -2.91 -0.02 3.88 16 46 H 0.13 5.47 7.75 -2.91 -0.02 5.45 16 47 H 0.10 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -71.96 391.26 1.94 -70.02 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.94 Total: 21.06 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 6.28 Total: -22.43 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.72 Total: -104.09 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.59 Total: -11.86 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.96 1.94 -70.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179230476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.675 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds