Wall clock time and date at job start Tue Mar 31 2020 14:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99705 * 2 1 4 4 C 1.50704 * 109.47318 * 66.04609 * 3 2 1 5 5 C 1.38647 * 120.78787 * 269.71712 * 4 3 2 6 6 C 1.38199 * 119.16162 * 179.79761 * 5 4 3 7 7 N 1.31873 * 120.76634 * 0.48412 * 6 5 4 8 8 C 1.31871 * 121.72174 * 359.74751 * 7 6 5 9 9 C 1.38200 * 120.76529 * 0.02562 * 8 7 6 10 10 C 1.46896 * 110.99967 * 236.04480 * 2 1 3 11 11 C 1.50697 * 109.47382 * 293.95299 * 10 2 1 12 12 C 1.38280 * 119.97205 * 270.02476 * 11 10 2 13 13 C 1.38250 * 120.10833 * 180.02562 * 12 11 10 14 14 C 1.38159 * 120.05742 * 359.68104 * 13 12 11 15 15 C 1.38710 * 119.94311 * 0.57011 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.72143 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 2 28 28 H 1.09003 * 109.47381 * 183.95359 * 1 2 3 29 29 H 1.08999 * 109.47080 * 303.95581 * 1 2 3 30 30 H 1.09004 * 109.46886 * 63.95499 * 1 2 3 31 31 H 1.09004 * 109.47083 * 186.04445 * 3 2 1 32 32 H 1.08994 * 109.47556 * 306.04385 * 3 2 1 33 33 H 1.07999 * 120.42072 * 0.02562 * 5 4 3 34 34 H 1.08003 * 119.62102 * 180.25599 * 6 5 4 35 35 H 1.08003 * 119.61554 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.42098 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.46944 * 173.95312 * 10 2 1 38 38 H 1.09002 * 109.47398 * 53.95754 * 10 2 1 39 39 H 1.08000 * 119.95034 * 0.02562 * 12 11 10 40 40 H 1.08006 * 119.97154 * 179.97438 * 13 12 11 41 41 H 1.08006 * 120.03137 * 180.29323 * 14 13 12 42 42 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 43 43 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 44 44 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 45 45 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 46 46 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 47 47 H 1.07998 * 120.02418 * 0.02613 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 6 0.4546 2.7603 1.4246 6 6 0.1573 3.3632 2.6321 7 7 0.9871 3.2738 3.6530 8 6 2.1222 2.6080 3.5677 9 6 2.4843 1.9755 2.3935 10 6 1.9955 -0.7660 -1.1375 11 6 1.6370 -2.2204 -0.9728 12 6 2.4944 -3.0713 -0.2998 13 6 2.1686 -4.4062 -0.1475 14 6 0.9819 -4.8919 -0.6619 15 6 0.1226 -4.0415 -1.3420 16 8 -1.0426 -4.5181 -1.8538 17 6 -1.3165 -5.9071 -1.6597 18 6 -2.6617 -6.2561 -2.2994 19 6 -2.9508 -7.7208 -2.0942 20 1 -2.2457 -8.3407 -1.5604 21 6 -4.1159 -8.2692 -2.5869 22 7 -4.9748 -7.5142 -3.2364 23 14 -4.4739 -10.0849 -2.3330 24 1 -4.5252 -10.3807 -0.8787 25 1 -5.7802 -10.4233 -2.9528 26 1 -3.4011 -10.8941 -2.9652 27 6 0.4520 -2.7023 -1.4938 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3445 -0.1082 32 1 1.5611 1.9274 -0.8309 33 1 -0.2272 2.8406 0.5908 34 1 -0.7637 3.9170 2.7398 35 1 2.7765 2.5565 4.4255 36 1 3.4150 1.4314 2.3300 37 1 3.0798 -0.6611 -1.1756 38 1 1.5612 -0.3873 -2.0628 39 1 3.4202 -2.6925 0.1075 40 1 2.8402 -5.0689 0.3782 41 1 0.7256 -5.9338 -0.5386 42 1 -0.5285 -6.5010 -2.1229 43 1 -1.3551 -6.1241 -0.5922 44 1 -3.4495 -5.6622 -1.8358 45 1 -2.6237 -6.0390 -3.3669 46 1 -5.7946 -7.8999 -3.5828 47 1 -0.2173 -2.0373 -2.0194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183747964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:14 Heat of formation + Delta-G solvation = 19.625994 kcal Electronic energy + Delta-G solvation = -25892.559885 eV Core-core repulsion = 22233.295212 eV Total energy + Delta-G solvation = -3659.264673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58305 -39.89360 -38.18859 -36.73726 -33.51302 -33.33721 -31.54885 -31.17353 -30.76740 -29.24841 -27.87292 -26.95460 -25.06148 -23.80114 -23.47807 -22.34312 -21.79702 -21.29784 -20.13305 -17.65881 -16.92465 -16.75439 -16.25763 -16.13400 -15.94676 -15.76421 -15.64116 -15.30043 -14.99351 -14.68720 -14.48148 -14.01996 -13.97642 -13.76139 -13.04271 -12.90822 -12.70881 -12.65860 -12.40551 -12.32182 -12.01017 -11.86810 -11.68744 -11.38540 -11.34926 -11.26902 -10.87027 -10.75414 -10.47045 -9.99389 -9.87306 -9.78450 -9.67902 -9.44329 -9.33327 -8.85105 -8.56381 -8.46331 -7.85584 -6.12019 -4.16817 0.82718 0.88592 1.41893 1.67744 3.27446 3.31851 3.33510 3.38210 3.71865 3.81611 4.10084 4.15778 4.25088 4.38688 4.40834 4.65614 4.75394 4.81340 4.90602 4.98815 5.05042 5.08397 5.22465 5.24279 5.29744 5.33435 5.33940 5.43094 5.46391 5.49992 5.63189 5.65280 5.78796 5.86955 5.99751 6.01324 6.04236 6.14892 6.38127 6.50079 6.54213 6.63292 6.66189 6.71552 6.74088 6.96966 7.48233 7.61649 7.66954 7.79298 8.04000 8.21864 8.88465 9.47491 10.99471 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.001951 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.581962 B =14346.126595 C =15002.950295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.529 5.529 3 C 0.090 3.910 4 C -0.031 4.031 5 C -0.167 4.167 6 C 0.097 3.903 7 N -0.488 5.488 8 C 0.096 3.904 9 C -0.152 4.152 10 C 0.098 3.902 11 C -0.047 4.047 12 C -0.149 4.149 13 C -0.081 4.081 14 C -0.210 4.210 15 C 0.145 3.855 16 O -0.317 6.317 17 C 0.065 3.935 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.156 4.156 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.264 0.736 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.408 20.475 7.979 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.253 5.253 3 C -0.038 4.038 4 C -0.039 4.039 5 C -0.188 4.188 6 C -0.060 4.060 7 N -0.198 5.198 8 C -0.061 4.061 9 C -0.172 4.172 10 C -0.029 4.029 11 C -0.047 4.047 12 C -0.168 4.168 13 C -0.099 4.099 14 C -0.229 4.229 15 C 0.098 3.902 16 O -0.230 6.230 17 C -0.009 4.009 18 C -0.011 4.011 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.175 4.175 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.150 0.850 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.002 20.746 8.969 28.283 hybrid contribution -0.320 -1.343 -1.312 1.905 sum 16.682 19.403 7.657 26.709 Atomic orbital electron populations 1.22607 0.86675 1.03688 1.00456 1.61995 1.08771 1.11447 1.43070 1.21092 1.00920 0.88680 0.93082 1.20145 0.93741 0.94335 0.95714 1.22098 0.97560 0.99383 0.99710 1.22741 0.98250 0.96492 0.88506 1.67673 1.03884 1.16638 1.31557 1.22779 0.93315 0.92875 0.97101 1.22032 1.01187 1.00419 0.93576 1.21035 1.00269 0.90091 0.91495 1.19286 0.93838 0.94264 0.97351 1.20733 1.00443 0.93348 1.02243 1.20893 0.95754 0.95376 0.97903 1.21400 0.96614 1.00691 1.04173 1.19143 0.86252 0.92859 0.91987 1.86167 1.34487 1.29579 1.72742 1.23328 1.01067 0.76239 1.00221 1.19116 0.88685 0.96556 0.96780 1.20929 1.05166 0.93509 1.36946 0.92416 1.24994 0.95961 0.98366 0.94883 1.69967 1.10363 1.35833 1.36587 0.86537 0.77595 0.84660 0.78530 1.20079 1.21104 1.20086 1.20272 0.98099 0.93325 1.05786 0.90095 0.91253 0.95301 0.89363 0.93334 0.85008 0.82827 0.82801 0.84678 0.89704 0.93574 0.86410 0.86172 0.85281 0.93137 0.93140 0.95429 0.95427 0.92639 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.83 60.07 0.53 0.67 16 2 N -0.53 -4.91 4.74 -245.82 -1.17 -6.08 16 3 C 0.09 0.64 5.16 -4.97 -0.03 0.62 16 4 C -0.03 -0.24 4.90 -104.32 -0.51 -0.76 16 5 C -0.17 -1.30 8.07 -39.44 -0.32 -1.61 16 6 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 7 N -0.49 -4.90 10.36 -13.25 -0.14 -5.04 16 8 C 0.10 0.80 11.18 -17.55 -0.20 0.61 16 9 C -0.15 -1.17 9.82 -39.44 -0.39 -1.56 16 10 C 0.10 0.91 5.12 -4.98 -0.03 0.88 16 11 C -0.05 -0.57 4.88 -104.65 -0.51 -1.08 16 12 C -0.15 -1.77 9.70 -39.56 -0.38 -2.16 16 13 C -0.08 -1.05 10.04 -39.61 -0.40 -1.44 16 14 C -0.21 -3.25 9.04 -39.44 -0.36 -3.61 16 15 C 0.14 2.48 6.69 -39.22 -0.26 2.22 16 16 O -0.32 -6.48 10.14 -19.43 -0.20 -6.67 16 17 C 0.07 1.40 4.68 37.16 0.17 1.57 16 18 C 0.03 0.67 5.34 -27.89 -0.15 0.53 16 19 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.16 -2.27 7.90 -39.43 -0.31 -2.58 16 28 H 0.08 0.98 6.17 -51.93 -0.32 0.66 16 29 H 0.07 0.68 5.94 -51.93 -0.31 0.37 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.81 8.03 -52.49 -0.42 0.39 16 34 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 38 H 0.05 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 41 H 0.13 1.98 6.30 -52.48 -0.33 1.65 16 42 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 43 H 0.05 1.03 7.65 -51.93 -0.40 0.64 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.12 1.72 8.03 -52.49 -0.42 1.30 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -31.72 388.95 -10.84 -42.56 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.18 Total: -0.71 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -3.74 Total: -20.46 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.57 Total: -36.78 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.20 Total: -6.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.72 -10.84 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183747964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.187 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds