Wall clock time and date at job start Tue Mar 31 2020 14:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99705 * 2 1 4 4 C 1.50704 * 109.47318 * 66.04609 * 3 2 1 5 5 C 1.38647 * 120.78787 * 269.71712 * 4 3 2 6 6 C 1.38199 * 119.16162 * 179.79761 * 5 4 3 7 7 N 1.31873 * 120.76634 * 0.48412 * 6 5 4 8 8 C 1.31871 * 121.72174 * 359.74751 * 7 6 5 9 9 C 1.38200 * 120.76529 * 0.02562 * 8 7 6 10 10 C 1.46896 * 110.99967 * 236.04480 * 2 1 3 11 11 C 1.50697 * 109.47382 * 293.95299 * 10 2 1 12 12 C 1.38280 * 119.97205 * 270.02476 * 11 10 2 13 13 C 1.38250 * 120.10833 * 180.02562 * 12 11 10 14 14 C 1.38159 * 120.05742 * 359.68104 * 13 12 11 15 15 C 1.38710 * 119.94311 * 0.57011 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.72143 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 2 28 28 H 1.09003 * 109.47381 * 183.95359 * 1 2 3 29 29 H 1.08999 * 109.47080 * 303.95581 * 1 2 3 30 30 H 1.09004 * 109.46886 * 63.95499 * 1 2 3 31 31 H 1.09004 * 109.47083 * 186.04445 * 3 2 1 32 32 H 1.08994 * 109.47556 * 306.04385 * 3 2 1 33 33 H 1.07999 * 120.42072 * 0.02562 * 5 4 3 34 34 H 1.08003 * 119.62102 * 180.25599 * 6 5 4 35 35 H 1.08003 * 119.61554 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.42098 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.46944 * 173.95312 * 10 2 1 38 38 H 1.09002 * 109.47398 * 53.95754 * 10 2 1 39 39 H 1.08000 * 119.95034 * 0.02562 * 12 11 10 40 40 H 1.08006 * 119.97154 * 179.97438 * 13 12 11 41 41 H 1.08006 * 120.03137 * 180.29323 * 14 13 12 42 42 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 43 43 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 44 44 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 45 45 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 46 46 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 47 47 H 1.07998 * 120.02418 * 0.02613 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 6 0.4546 2.7603 1.4246 6 6 0.1573 3.3632 2.6321 7 7 0.9871 3.2738 3.6530 8 6 2.1222 2.6080 3.5677 9 6 2.4843 1.9755 2.3935 10 6 1.9955 -0.7660 -1.1375 11 6 1.6370 -2.2204 -0.9728 12 6 2.4944 -3.0713 -0.2998 13 6 2.1686 -4.4062 -0.1475 14 6 0.9819 -4.8919 -0.6619 15 6 0.1226 -4.0415 -1.3420 16 8 -1.0426 -4.5181 -1.8538 17 6 -1.3165 -5.9071 -1.6597 18 6 -2.6617 -6.2561 -2.2994 19 6 -2.9508 -7.7208 -2.0942 20 1 -2.2457 -8.3407 -1.5604 21 6 -4.1159 -8.2692 -2.5869 22 7 -4.9748 -7.5142 -3.2364 23 14 -4.4739 -10.0849 -2.3330 24 1 -4.5252 -10.3807 -0.8787 25 1 -5.7802 -10.4233 -2.9528 26 1 -3.4011 -10.8941 -2.9652 27 6 0.4520 -2.7023 -1.4938 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3445 -0.1082 32 1 1.5611 1.9274 -0.8309 33 1 -0.2272 2.8406 0.5908 34 1 -0.7637 3.9170 2.7398 35 1 2.7765 2.5565 4.4255 36 1 3.4150 1.4314 2.3300 37 1 3.0798 -0.6611 -1.1756 38 1 1.5612 -0.3873 -2.0628 39 1 3.4202 -2.6925 0.1075 40 1 2.8402 -5.0689 0.3782 41 1 0.7256 -5.9338 -0.5386 42 1 -0.5285 -6.5010 -2.1229 43 1 -1.3551 -6.1241 -0.5922 44 1 -3.4495 -5.6622 -1.8358 45 1 -2.6237 -6.0390 -3.3669 46 1 -5.7946 -7.8999 -3.5828 47 1 -0.2173 -2.0373 -2.0194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183747964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:13 Heat of formation + Delta-G solvation = 1.339421 kcal Electronic energy + Delta-G solvation = -25893.352850 eV Core-core repulsion = 22233.295212 eV Total energy + Delta-G solvation = -3660.057638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26309 -41.00120 -39.22928 -37.75162 -35.48708 -34.14438 -32.59485 -32.15816 -31.98991 -30.65319 -28.57512 -27.80856 -26.93907 -24.54991 -24.24526 -23.47121 -23.17989 -22.15962 -21.40912 -19.09807 -18.14983 -17.51981 -17.37272 -17.06542 -16.96748 -16.85640 -16.63990 -16.51543 -16.41878 -15.83264 -15.49058 -14.77247 -14.63950 -14.49921 -14.33849 -14.32849 -14.25997 -13.86040 -13.41820 -13.13184 -13.05731 -12.96611 -12.79272 -12.66877 -12.56623 -12.47045 -12.30085 -12.22318 -11.83752 -11.59340 -11.58390 -11.40116 -10.62973 -10.61244 -10.39845 -10.01957 -9.83021 -9.32007 -9.07961 -8.28051 -6.41977 0.21893 0.26647 0.42143 0.56155 1.39811 1.43834 1.51866 2.26248 2.50180 2.65654 2.92453 3.06117 3.28877 3.61837 3.69294 3.79388 3.88921 3.91957 4.12986 4.19736 4.22241 4.24685 4.27854 4.32113 4.37856 4.41591 4.45658 4.57253 4.61414 4.64823 4.71451 4.74127 4.79153 4.83042 4.94747 5.03860 5.08423 5.12236 5.29877 5.41389 5.44560 5.44671 5.53938 5.64371 5.66973 5.82559 5.89860 5.96481 6.03324 6.07148 6.57003 6.72435 7.07777 7.28091 8.84801 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.001951 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.581962 B =14346.126595 C =15002.950295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.535 5.535 3 C 0.093 3.907 4 C -0.040 4.040 5 C -0.171 4.171 6 C 0.082 3.918 7 N -0.519 5.519 8 C 0.082 3.918 9 C -0.153 4.153 10 C 0.100 3.900 11 C -0.042 4.042 12 C -0.138 4.138 13 C -0.080 4.080 14 C -0.224 4.224 15 C 0.104 3.896 16 O -0.343 6.343 17 C 0.086 3.914 18 C 0.029 3.971 19 C -0.547 4.547 20 H 0.070 0.930 21 C 0.001 3.999 22 N -0.930 5.930 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.263 1.263 27 C -0.162 4.162 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.124 0.876 42 H 0.059 0.941 43 H 0.057 0.943 44 H -0.003 1.003 45 H -0.002 1.002 46 H 0.267 0.733 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.187 20.416 8.840 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.259 5.259 3 C -0.034 4.034 4 C -0.049 4.049 5 C -0.191 4.191 6 C -0.075 4.075 7 N -0.229 5.229 8 C -0.074 4.074 9 C -0.173 4.173 10 C -0.026 4.026 11 C -0.042 4.042 12 C -0.157 4.157 13 C -0.098 4.098 14 C -0.243 4.243 15 C 0.059 3.941 16 O -0.258 6.258 17 C 0.012 3.988 18 C -0.008 4.008 19 C -0.585 4.585 20 H 0.088 0.912 21 C -0.198 4.198 22 N -0.569 5.569 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.181 4.181 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.190 0.810 36 H 0.173 0.827 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.076 0.924 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.809 20.707 9.840 30.299 hybrid contribution -1.091 -1.163 -1.546 2.221 sum 18.718 19.544 8.294 28.305 Atomic orbital electron populations 1.22496 0.87682 1.02033 1.00813 1.61952 1.07963 1.12900 1.43063 1.21146 1.02088 0.87303 0.92837 1.20348 0.93832 0.94430 0.96255 1.22275 0.97897 0.99099 0.99814 1.23053 0.98767 0.96959 0.88677 1.67672 1.04897 1.17758 1.32523 1.23166 0.93230 0.92761 0.98232 1.22271 1.01823 1.00070 0.93118 1.21092 1.01927 0.87964 0.91667 1.19641 0.92506 0.96141 0.95924 1.21183 1.01161 0.92746 1.00563 1.21248 0.94918 0.96476 0.97189 1.21495 0.97644 1.00369 1.04769 1.19499 0.85968 0.94300 0.94379 1.86073 1.36910 1.28544 1.74242 1.22829 0.98485 0.77558 0.99957 1.18955 0.90713 0.96106 0.95060 1.21362 1.05758 0.94300 1.37085 0.91151 1.26059 0.95636 1.03798 0.94278 1.70117 1.10955 1.38265 1.37611 0.85329 0.77633 0.78071 0.78998 1.18863 1.20727 1.18782 1.20428 0.99224 0.92290 1.06146 0.92671 0.91233 0.94694 0.87273 0.92511 0.83803 0.81496 0.81036 0.82703 0.86875 0.93204 0.83014 0.83303 0.85824 0.92266 0.92450 0.98437 0.98324 0.92421 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.83 127.69 1.13 1.47 16 2 N -0.53 -8.47 4.74 -931.64 -4.42 -12.89 16 3 C 0.09 1.04 5.16 85.56 0.44 1.48 16 4 C -0.04 -0.55 4.90 -19.67 -0.10 -0.65 16 5 C -0.17 -2.43 8.07 22.36 0.18 -2.25 16 6 C 0.08 1.33 11.18 84.68 0.95 2.28 16 7 N -0.52 -10.10 10.36 -195.84 -2.03 -12.13 16 8 C 0.08 1.27 11.18 84.68 0.95 2.21 16 9 C -0.15 -2.00 9.82 22.36 0.22 -1.78 16 10 C 0.10 1.53 5.12 85.56 0.44 1.97 16 11 C -0.04 -0.92 4.88 -19.88 -0.10 -1.02 16 12 C -0.14 -2.81 9.70 22.28 0.22 -2.59 16 13 C -0.08 -1.87 10.04 22.25 0.22 -1.65 16 14 C -0.22 -6.86 9.04 22.36 0.20 -6.66 16 15 C 0.10 3.66 6.69 22.50 0.15 3.81 16 16 O -0.34 -14.82 10.14 -92.43 -0.94 -15.76 16 17 C 0.09 3.84 4.68 71.98 0.34 4.18 16 18 C 0.03 1.60 5.34 29.85 0.16 1.76 16 19 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 20 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 21 C 0.00 0.05 5.46 84.65 0.46 0.52 16 22 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 23 Si 0.98 43.63 29.54 68.60 2.03 45.65 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 27 C -0.16 -4.73 7.90 22.37 0.18 -4.55 16 28 H 0.05 1.34 6.17 -2.39 -0.01 1.32 16 29 H 0.07 1.30 5.94 -2.39 -0.01 1.29 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.11 0.79 7.89 -2.39 -0.02 0.77 16 32 H 0.06 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.14 1.59 8.03 -2.91 -0.02 1.56 16 34 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.11 1.14 7.87 -2.38 -0.02 1.13 16 38 H 0.05 0.75 8.06 -2.39 -0.02 0.73 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.12 3.82 6.30 -2.91 -0.02 3.80 16 42 H 0.06 2.49 7.67 -2.39 -0.02 2.47 16 43 H 0.06 2.43 7.65 -2.39 -0.02 2.41 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.12 3.47 8.03 -2.91 -0.02 3.44 16 Total: -1.00 -71.29 388.95 2.14 -69.15 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.95 Total: 14.96 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 6.27 Total: -32.39 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -6.16 Total: -81.62 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.94 Total: -15.76 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -71.29 2.14 -69.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183747964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.493 kcal (2) G-P(sol) polarization free energy of solvation -71.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds