Wall clock time and date at job start Tue Mar 31 2020 14:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35841 * 116.99844 * 2 1 4 4 C 1.38882 * 119.93598 * 0.02562 * 3 2 1 5 5 C 1.37851 * 120.06997 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.93036 * 0.02562 * 5 4 3 7 7 C 1.48308 * 120.06451 * 179.97438 * 6 5 4 8 8 C 1.39798 * 120.90484 * 179.72040 * 7 6 5 9 9 C 1.37948 * 119.01471 * 179.77512 * 8 7 6 10 10 N 1.31937 * 120.88762 * 0.50657 * 9 8 7 11 11 C 1.31938 * 122.00747 * 359.74166 * 10 9 8 12 12 C 1.37955 * 120.88696 * 359.97438 * 11 10 9 13 13 C 1.39395 * 119.86565 * 359.70853 * 6 5 4 14 14 C 1.37895 * 119.93285 * 0.56278 * 13 6 5 15 15 C 1.50703 * 119.96475 * 179.73089 * 14 13 6 16 16 N 1.46899 * 109.47107 * 259.72709 * 15 14 13 17 17 C 1.46904 * 111.00029 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46950 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47071 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47153 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99780 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99793 * 180.02562 * 20 19 18 23 23 N 1.31521 * 120.00052 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47121 * 60.00049 * 24 22 20 26 26 H 1.48506 * 109.47165 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47240 * 300.00130 * 24 22 20 28 28 H 1.08998 * 109.47426 * 300.00080 * 1 2 3 29 29 H 1.09002 * 109.46819 * 60.00494 * 1 2 3 30 30 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.96352 * 0.02621 * 4 3 2 32 32 H 1.08000 * 120.03913 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.49571 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.55860 * 180.22496 * 9 8 7 35 35 H 1.08002 * 119.56324 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.49204 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.02552 * 180.31541 * 13 6 5 38 38 H 1.09002 * 109.47152 * 139.72796 * 15 14 13 39 39 H 1.09001 * 109.46980 * 19.72896 * 15 14 13 40 40 H 1.00908 * 110.99847 * 56.05051 * 16 15 14 41 41 H 1.08995 * 109.47167 * 300.00240 * 17 16 15 42 42 H 1.09003 * 109.46442 * 60.00214 * 17 16 15 43 43 H 1.09005 * 109.47424 * 300.00229 * 18 17 16 44 44 H 1.09004 * 109.47266 * 59.99979 * 18 17 16 45 45 H 1.08995 * 109.47051 * 300.00167 * 19 18 17 46 46 H 1.09003 * 109.46901 * 60.00330 * 19 18 17 47 47 H 0.97005 * 119.99618 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2880 2.3743 0.0005 5 6 1.9109 3.6040 0.0000 6 6 3.3033 3.6786 -0.0016 7 6 3.9766 5.0000 -0.0028 8 6 5.3713 5.0953 0.0015 9 6 5.9567 6.3444 -0.0045 10 7 5.2189 7.4382 -0.0041 11 6 3.9003 7.3922 -0.0030 12 6 3.2337 6.1844 -0.0029 13 6 4.0611 2.5086 0.0035 14 6 3.4322 1.2814 -0.0017 15 6 4.2508 0.0161 -0.0023 16 7 4.3137 -0.5257 -1.3663 17 6 5.1062 -1.7620 -1.4057 18 6 5.1493 -2.2947 -2.8393 19 6 5.9741 -3.5827 -2.8802 20 6 6.0160 -4.1078 -4.2921 21 1 5.5051 -3.5762 -5.0813 22 6 6.7058 -5.2673 -4.5762 23 7 7.3267 -5.9154 -3.6149 24 14 6.7572 -5.9185 -6.3262 25 1 7.3801 -4.9039 -7.2139 26 1 7.5579 -7.1686 -6.3659 27 1 5.3750 -6.2004 -6.7903 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2096 2.3158 0.0014 32 1 1.3212 4.5088 0.0000 33 1 5.9815 4.2042 0.0061 34 1 7.0334 6.4282 -0.0050 35 1 3.3350 8.3125 -0.0023 36 1 2.1542 6.1542 -0.0024 37 1 5.1397 2.5634 0.0074 38 1 3.7878 -0.7165 0.6586 39 1 5.2593 0.2357 0.3483 40 1 4.6801 0.1589 -2.0108 41 1 6.1205 -1.5544 -1.0649 42 1 4.6494 -2.5071 -0.7543 43 1 4.1350 -2.5022 -3.1805 44 1 5.6063 -1.5493 -3.4903 45 1 6.9883 -3.3756 -2.5388 46 1 5.5167 -4.3279 -2.2293 47 1 7.8122 -6.7310 -3.8149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187202116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:08 Heat of formation + Delta-G solvation = 9.873163 kcal Electronic energy + Delta-G solvation = -25817.561324 eV Core-core repulsion = 22157.873736 eV Total energy + Delta-G solvation = -3659.687587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84907 -40.04610 -37.79429 -36.41419 -33.97389 -33.23359 -32.24751 -31.55021 -30.43050 -29.51357 -27.58255 -26.72642 -24.84410 -24.10823 -23.65754 -22.18320 -21.81048 -20.97907 -20.03105 -18.36215 -17.41050 -16.95371 -16.33896 -16.15683 -15.93139 -15.89909 -15.22906 -14.95406 -14.58862 -14.36517 -14.30687 -14.20179 -14.10522 -13.93609 -13.68095 -13.12195 -12.89961 -12.68505 -12.31902 -12.23115 -11.88711 -11.66812 -11.63457 -11.55043 -11.32156 -10.90441 -10.78432 -10.53820 -10.49642 -10.16744 -9.80556 -9.65042 -9.50300 -9.38937 -9.17333 -9.01438 -8.31050 -8.13515 -8.05559 -5.96459 -3.98373 0.33097 0.82694 1.02228 1.63910 3.09731 3.31457 3.35739 3.39627 3.42600 3.71716 4.12557 4.14330 4.26199 4.44008 4.48102 4.62114 4.64860 4.70831 4.80066 4.84520 4.88626 4.95348 5.10748 5.23206 5.29482 5.32679 5.37193 5.39113 5.40940 5.55426 5.58741 5.74753 5.80905 5.89216 5.94430 6.00116 6.18024 6.28871 6.36598 6.37036 6.45074 6.76312 6.80648 7.17460 7.18416 7.38565 7.66949 7.67367 7.72351 7.87990 8.04276 8.47694 9.08630 9.65254 11.14926 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.002162 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.960412 B =12949.234744 C =14462.998638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.294 6.294 3 C 0.167 3.833 4 C -0.214 4.214 5 C -0.059 4.059 6 C -0.105 4.105 7 C 0.019 3.981 8 C -0.173 4.173 9 C 0.104 3.896 10 N -0.495 5.495 11 C 0.102 3.898 12 C -0.175 4.175 13 C -0.055 4.055 14 C -0.112 4.112 15 C 0.106 3.894 16 N -0.681 5.681 17 C 0.061 3.939 18 C -0.106 4.106 19 C 0.022 3.978 20 C -0.518 4.518 21 H 0.054 0.946 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.336 0.664 41 H 0.023 0.977 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 24.118 12.152 29.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.205 6.205 3 C 0.120 3.880 4 C -0.233 4.233 5 C -0.078 4.078 6 C -0.106 4.106 7 C 0.011 3.989 8 C -0.192 4.192 9 C -0.052 4.052 10 N -0.204 5.204 11 C -0.054 4.054 12 C -0.195 4.195 13 C -0.073 4.073 14 C -0.113 4.113 15 C -0.022 4.022 16 N -0.312 5.312 17 C -0.068 4.068 18 C -0.144 4.144 19 C -0.015 4.015 20 C -0.557 4.557 21 H 0.072 0.928 22 C -0.146 4.146 23 N -0.536 5.536 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.153 0.847 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.032 0.968 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.576 24.219 12.246 29.911 hybrid contribution 0.238 -0.781 -0.869 1.193 sum -12.338 23.437 11.377 28.827 Atomic orbital electron populations 1.23109 0.78571 1.04306 1.01011 1.86233 1.21003 1.26081 1.87211 1.18975 0.91727 0.84393 0.92919 1.21174 1.00226 0.92039 1.09870 1.20943 0.93308 0.97244 0.96258 1.18456 0.93046 0.91340 1.07731 1.19121 0.93100 0.92470 0.94250 1.22249 0.94577 0.99738 1.02654 1.22702 1.00340 0.87557 0.94589 1.67661 1.07387 1.32704 1.12657 1.22671 0.90388 0.97462 0.94897 1.22187 1.01308 0.92760 1.03216 1.20983 0.99782 0.90267 0.96305 1.19177 0.90922 0.95410 1.05796 1.20688 0.96378 0.92689 0.92480 1.60566 1.57431 1.07465 1.05719 1.22129 0.93991 0.90604 1.00051 1.21614 1.01019 0.99146 0.92628 1.19063 0.94560 0.90946 0.96959 1.21225 1.31886 1.08273 0.94284 0.92751 1.25033 0.95591 0.96874 0.97077 1.69962 1.34074 1.17692 1.31903 0.86656 0.78058 0.78168 0.85094 1.20285 1.21331 1.20240 0.92893 0.92555 0.87977 0.85033 0.85513 0.84511 0.82606 0.82763 0.84717 0.85072 0.89897 0.94733 0.84703 0.95837 0.91404 0.92581 0.93740 0.96833 0.96573 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.29 -3.52 9.71 -19.24 -0.19 -3.71 16 3 C 0.17 1.91 6.66 -39.12 -0.26 1.65 16 4 C -0.21 -1.97 9.02 -39.48 -0.36 -2.33 16 5 C -0.06 -0.51 9.44 -39.28 -0.37 -0.88 16 6 C -0.11 -1.01 5.88 -104.88 -0.62 -1.63 16 7 C 0.02 0.17 5.91 -104.59 -0.62 -0.45 16 8 C -0.17 -1.49 9.50 -39.10 -0.37 -1.86 16 9 C 0.10 0.91 11.17 -17.61 -0.20 0.72 16 10 N -0.49 -4.97 10.35 -13.35 -0.14 -5.11 16 11 C 0.10 0.84 11.17 -17.61 -0.20 0.64 16 12 C -0.18 -1.38 9.50 -39.10 -0.37 -1.75 16 13 C -0.05 -0.55 9.06 -39.28 -0.36 -0.91 16 14 C -0.11 -1.31 5.40 -104.53 -0.56 -1.87 16 15 C 0.11 1.37 5.47 -4.98 -0.03 1.34 16 16 N -0.68 -10.33 6.49 -115.05 -0.75 -11.08 16 17 C 0.06 1.07 5.68 -3.82 -0.02 1.05 16 18 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 19 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 20 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 21 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 24 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 28 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.13 0.91 6.28 -52.49 -0.33 0.58 16 32 H 0.13 0.78 6.29 -52.49 -0.33 0.45 16 33 H 0.14 0.96 6.34 -52.49 -0.33 0.62 16 34 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 0.74 6.34 -52.49 -0.33 0.41 16 37 H 0.13 1.13 6.26 -52.49 -0.33 0.80 16 38 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 39 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 40 H 0.34 4.85 8.72 -39.29 -0.34 4.51 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -33.64 389.88 -10.47 -44.11 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.96 Total: 0.36 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -4.03 Total: -20.83 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.15 Total: -42.78 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.19 Total: -3.71 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.64 -10.47 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187202116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.981 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds