Wall clock time and date at job start Tue Mar 31 2020 14:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35841 * 116.99844 * 2 1 4 4 C 1.38882 * 119.93598 * 0.02562 * 3 2 1 5 5 C 1.37851 * 120.06997 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.93036 * 0.02562 * 5 4 3 7 7 C 1.48308 * 120.06451 * 179.97438 * 6 5 4 8 8 C 1.39798 * 120.90484 * 179.72040 * 7 6 5 9 9 C 1.37948 * 119.01471 * 179.77512 * 8 7 6 10 10 N 1.31937 * 120.88762 * 0.50657 * 9 8 7 11 11 C 1.31938 * 122.00747 * 359.74166 * 10 9 8 12 12 C 1.37955 * 120.88696 * 359.97438 * 11 10 9 13 13 C 1.39395 * 119.86565 * 359.70853 * 6 5 4 14 14 C 1.37895 * 119.93285 * 0.56278 * 13 6 5 15 15 C 1.50703 * 119.96475 * 179.73089 * 14 13 6 16 16 N 1.46899 * 109.47107 * 259.72709 * 15 14 13 17 17 C 1.46904 * 111.00029 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46950 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47071 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47153 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99780 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99793 * 180.02562 * 20 19 18 23 23 N 1.31521 * 120.00052 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47121 * 60.00049 * 24 22 20 26 26 H 1.48506 * 109.47165 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47240 * 300.00130 * 24 22 20 28 28 H 1.08998 * 109.47426 * 300.00080 * 1 2 3 29 29 H 1.09002 * 109.46819 * 60.00494 * 1 2 3 30 30 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.96352 * 0.02621 * 4 3 2 32 32 H 1.08000 * 120.03913 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.49571 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.55860 * 180.22496 * 9 8 7 35 35 H 1.08002 * 119.56324 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.49204 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.02552 * 180.31541 * 13 6 5 38 38 H 1.09002 * 109.47152 * 139.72796 * 15 14 13 39 39 H 1.09001 * 109.46980 * 19.72896 * 15 14 13 40 40 H 1.00908 * 110.99847 * 56.05051 * 16 15 14 41 41 H 1.08995 * 109.47167 * 300.00240 * 17 16 15 42 42 H 1.09003 * 109.46442 * 60.00214 * 17 16 15 43 43 H 1.09005 * 109.47424 * 300.00229 * 18 17 16 44 44 H 1.09004 * 109.47266 * 59.99979 * 18 17 16 45 45 H 1.08995 * 109.47051 * 300.00167 * 19 18 17 46 46 H 1.09003 * 109.46901 * 60.00330 * 19 18 17 47 47 H 0.97005 * 119.99618 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2880 2.3743 0.0005 5 6 1.9109 3.6040 0.0000 6 6 3.3033 3.6786 -0.0016 7 6 3.9766 5.0000 -0.0028 8 6 5.3713 5.0953 0.0015 9 6 5.9567 6.3444 -0.0045 10 7 5.2189 7.4382 -0.0041 11 6 3.9003 7.3922 -0.0030 12 6 3.2337 6.1844 -0.0029 13 6 4.0611 2.5086 0.0035 14 6 3.4322 1.2814 -0.0017 15 6 4.2508 0.0161 -0.0023 16 7 4.3137 -0.5257 -1.3663 17 6 5.1062 -1.7620 -1.4057 18 6 5.1493 -2.2947 -2.8393 19 6 5.9741 -3.5827 -2.8802 20 6 6.0160 -4.1078 -4.2921 21 1 5.5051 -3.5762 -5.0813 22 6 6.7058 -5.2673 -4.5762 23 7 7.3267 -5.9154 -3.6149 24 14 6.7572 -5.9185 -6.3262 25 1 7.3801 -4.9039 -7.2139 26 1 7.5579 -7.1686 -6.3659 27 1 5.3750 -6.2004 -6.7903 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2096 2.3158 0.0014 32 1 1.3212 4.5088 0.0000 33 1 5.9815 4.2042 0.0061 34 1 7.0334 6.4282 -0.0050 35 1 3.3350 8.3125 -0.0023 36 1 2.1542 6.1542 -0.0024 37 1 5.1397 2.5634 0.0074 38 1 3.7878 -0.7165 0.6586 39 1 5.2593 0.2357 0.3483 40 1 4.6801 0.1589 -2.0108 41 1 6.1205 -1.5544 -1.0649 42 1 4.6494 -2.5071 -0.7543 43 1 4.1350 -2.5022 -3.1805 44 1 5.6063 -1.5493 -3.4903 45 1 6.9883 -3.3756 -2.5388 46 1 5.5167 -4.3279 -2.2293 47 1 7.8122 -6.7310 -3.8149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187202116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:07 Heat of formation + Delta-G solvation = -10.323305 kcal Electronic energy + Delta-G solvation = -25818.437108 eV Core-core repulsion = 22157.873736 eV Total energy + Delta-G solvation = -3660.563372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54009 -40.71953 -38.56274 -37.70279 -35.64229 -34.28590 -33.50420 -32.38062 -31.68449 -30.23399 -28.55284 -28.01609 -26.16623 -24.78325 -24.50298 -23.77270 -22.52820 -22.07787 -21.49836 -19.08827 -18.48676 -18.05798 -17.68598 -16.94226 -16.72638 -16.69450 -16.52931 -16.28654 -15.75557 -15.46398 -15.28585 -15.03608 -14.91180 -14.68286 -14.55316 -14.33983 -14.18204 -13.71119 -13.52540 -13.33834 -13.18418 -12.92956 -12.72590 -12.54296 -12.46787 -12.37475 -12.28131 -12.22230 -11.65287 -11.52322 -11.38095 -11.11658 -10.83664 -10.54702 -10.43835 -10.09536 -9.96549 -9.32642 -8.82809 -8.19772 -6.30914 -0.34703 0.23324 0.29000 0.93454 1.39715 1.43198 1.51141 2.41103 2.42434 2.60045 3.04958 3.12904 3.35080 3.52273 3.60646 3.66182 3.74593 4.01611 4.08734 4.15998 4.18259 4.22741 4.29276 4.33421 4.42763 4.44018 4.53296 4.54362 4.69548 4.72945 4.75896 4.77343 4.86189 4.92458 4.98699 5.03388 5.10791 5.13505 5.24246 5.31019 5.38226 5.51760 5.60571 5.73839 5.75385 5.78867 5.85899 6.04421 6.27319 6.48160 6.48629 6.85546 7.05935 7.38002 8.91877 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.002162 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.960412 B =12949.234744 C =14462.998638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.149 3.851 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.110 4.110 7 C 0.003 3.997 8 C -0.180 4.180 9 C 0.092 3.908 10 N -0.521 5.521 11 C 0.093 3.907 12 C -0.172 4.172 13 C -0.058 4.058 14 C -0.132 4.132 15 C 0.112 3.888 16 N -0.683 5.683 17 C 0.075 3.925 18 C -0.091 4.091 19 C 0.026 3.974 20 C -0.544 4.544 21 H 0.059 0.941 22 C -0.003 4.003 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.282 1.282 27 H -0.267 1.267 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.160 0.840 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.341 0.659 41 H 0.026 0.974 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.050 0.950 45 H -0.008 1.008 46 H -0.009 1.009 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.952 25.858 11.464 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.102 3.898 4 C -0.231 4.231 5 C -0.074 4.074 6 C -0.110 4.110 7 C -0.005 4.005 8 C -0.199 4.199 9 C -0.063 4.063 10 N -0.231 5.231 11 C -0.063 4.063 12 C -0.192 4.192 13 C -0.077 4.077 14 C -0.133 4.133 15 C -0.017 4.017 16 N -0.314 5.314 17 C -0.054 4.054 18 C -0.129 4.129 19 C -0.012 4.012 20 C -0.582 4.582 21 H 0.077 0.923 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.191 1.191 26 H -0.207 1.207 27 H -0.192 1.192 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.190 0.810 35 H 0.196 0.804 36 H 0.178 0.822 37 H 0.158 0.842 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.159 0.841 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.010 0.990 46 H 0.009 0.991 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.958 25.981 11.564 31.679 hybrid contribution 0.627 -1.262 -0.599 1.532 sum -13.330 24.719 10.965 30.148 Atomic orbital electron populations 1.23334 0.76781 1.05211 1.02346 1.86183 1.23081 1.26869 1.87487 1.19210 0.91914 0.85032 0.93620 1.21435 1.01354 0.91389 1.08933 1.21300 0.93163 0.98161 0.94774 1.18605 0.93652 0.91280 1.07474 1.19267 0.93477 0.92712 0.95020 1.22429 0.94852 1.00156 1.02499 1.23017 1.01271 0.87463 0.94577 1.67681 1.08494 1.33429 1.13503 1.23135 0.90087 0.98742 0.94324 1.22460 1.02571 0.92071 1.02075 1.21101 1.00442 0.90073 0.96055 1.19123 0.91266 0.95085 1.07866 1.20613 0.97166 0.93194 0.90691 1.60471 1.56627 1.06837 1.07454 1.21814 0.94533 0.91735 0.97340 1.21356 0.99454 0.96884 0.95162 1.18965 0.93961 0.92742 0.95517 1.21664 1.32185 1.08910 0.95418 0.92319 1.26010 0.94966 0.97107 1.01931 1.70098 1.34709 1.18167 1.34366 0.85485 0.78541 0.77659 0.79268 1.19130 1.20724 1.19200 0.90999 0.91656 0.87453 0.82714 0.82668 0.83518 0.81021 0.80354 0.82213 0.84165 0.91099 0.93736 0.84113 0.95621 0.92227 0.93193 0.93154 0.98974 0.99080 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -7.63 9.71 -91.77 -0.89 -8.52 16 3 C 0.15 3.29 6.66 22.57 0.15 3.44 16 4 C -0.21 -3.45 9.02 22.33 0.20 -3.24 16 5 C -0.06 -0.81 9.44 22.47 0.21 -0.60 16 6 C -0.11 -1.91 5.88 -20.03 -0.12 -2.03 16 7 C 0.00 0.05 5.91 -19.84 -0.12 -0.06 16 8 C -0.18 -2.90 9.50 22.58 0.21 -2.69 16 9 C 0.09 1.54 11.17 84.61 0.95 2.48 16 10 N -0.52 -9.86 10.35 -196.15 -2.03 -11.89 16 11 C 0.09 1.35 11.17 84.61 0.95 2.30 16 12 C -0.17 -2.29 9.50 22.58 0.21 -2.08 16 13 C -0.06 -1.12 9.06 22.47 0.20 -0.92 16 14 C -0.13 -3.03 5.40 -19.80 -0.11 -3.13 16 15 C 0.11 2.89 5.47 85.56 0.47 3.35 16 16 N -0.68 -20.69 6.49 -517.92 -3.36 -24.05 16 17 C 0.07 2.68 5.68 86.30 0.49 3.17 16 18 C -0.09 -3.90 5.41 30.59 0.17 -3.73 16 19 C 0.03 1.40 4.97 29.85 0.15 1.55 16 20 C -0.54 -31.86 9.11 25.60 0.23 -31.62 16 21 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 22 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 23 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 24 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 29 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.16 1.67 6.28 -2.91 -0.02 1.65 16 32 H 0.16 1.29 6.29 -2.91 -0.02 1.27 16 33 H 0.15 1.92 6.34 -2.91 -0.02 1.91 16 34 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.16 1.18 6.34 -2.91 -0.02 1.16 16 37 H 0.14 2.30 6.26 -2.91 -0.02 2.28 16 38 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 39 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16 40 H 0.34 9.71 8.72 -89.69 -0.78 8.93 16 41 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -73.05 389.88 2.05 -71.00 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.20 Total: 16.07 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 5.82 Total: -32.16 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -5.11 Total: -93.45 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.89 Total: -8.52 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.05 2.05 -71.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187202116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.679 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds