Wall clock time and date at job start Tue Mar 31 2020 14:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99785 * 2 1 4 4 C 1.50691 * 109.47030 * 270.00207 * 3 2 1 5 5 H 1.07999 * 120.00454 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99929 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99888 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00091 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47070 * 59.99629 * 8 6 4 10 10 H 1.48500 * 109.47296 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47006 * 299.99971 * 8 6 4 12 12 C 1.39674 * 119.99985 * 179.97438 * 2 1 3 13 13 C 1.38909 * 120.07426 * 0.02562 * 12 2 1 14 14 C 1.38101 * 119.92147 * 179.97438 * 13 12 2 15 15 C 1.38278 * 120.07915 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92957 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47276 * 89.99822 * 16 15 14 18 18 C 1.39675 * 119.99822 * 180.02562 * 17 16 15 19 19 C 1.38931 * 120.07638 * 359.72141 * 18 17 16 20 20 C 1.38084 * 119.92017 * 179.74601 * 19 18 17 21 21 C 1.38302 * 120.07782 * 0.55381 * 20 19 18 22 22 C 1.38261 * 120.15183 * 359.70144 * 21 20 19 23 23 C 1.50700 * 119.96595 * 180.02562 * 22 21 20 24 24 O 1.42897 * 109.47178 * 269.97512 * 23 22 21 25 25 C 1.38130 * 120.07450 * 0.02562 * 22 21 20 26 26 C 1.38285 * 120.14873 * 0.26914 * 15 14 13 27 27 C 1.38109 * 120.07516 * 359.45349 * 26 15 14 28 28 H 1.09005 * 109.47221 * 270.00014 * 1 2 3 29 29 H 1.09003 * 109.47324 * 29.99471 * 1 2 3 30 30 H 1.08999 * 109.47557 * 150.00090 * 1 2 3 31 31 H 1.09003 * 109.47224 * 29.99954 * 3 2 1 32 32 H 1.08999 * 109.46933 * 149.99847 * 3 2 1 33 33 H 0.97003 * 119.99826 * 179.97438 * 7 6 4 34 34 H 1.08002 * 120.04019 * 359.95610 * 13 12 2 35 35 H 1.08008 * 119.96375 * 179.97438 * 14 13 12 36 36 H 1.09004 * 109.47205 * 329.99797 * 16 15 14 37 37 H 1.09005 * 109.47240 * 210.00006 * 16 15 14 38 38 H 0.96999 * 119.99984 * 0.02562 * 17 16 15 39 39 H 1.07993 * 120.03794 * 0.02562 * 19 18 17 40 40 H 1.08005 * 119.96070 * 180.27477 * 20 19 18 41 41 H 1.08001 * 119.92834 * 179.71694 * 21 20 19 42 42 H 1.09003 * 109.47045 * 29.97643 * 23 22 21 43 43 H 1.09004 * 109.47121 * 149.97830 * 23 22 21 44 44 H 0.96697 * 114.00217 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.03771 * 180.02562 * 25 22 21 46 46 H 1.08004 * 119.96383 * 179.70290 * 26 15 14 47 47 H 1.07996 * 120.04227 * 180.26915 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4386 3.4165 -3.4339 9 1 2.1413 3.5943 -4.1342 10 1 4.1821 4.7020 -3.4339 11 1 4.2411 2.3812 -4.1336 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6076 0.0005 15 6 3.5468 -3.6059 0.0011 16 6 4.3004 -4.9109 0.0017 17 7 4.5451 -5.3342 -1.3793 18 6 5.2314 -6.5237 -1.6340 19 6 5.6877 -7.3038 -0.5788 20 6 6.3613 -8.4819 -0.8342 21 6 6.5918 -8.8798 -2.1385 22 6 6.1437 -8.1032 -3.1910 23 6 6.3967 -8.5410 -4.6106 24 8 7.6432 -8.0054 -5.0593 25 6 5.4643 -6.9264 -2.9427 26 6 4.2398 -2.4092 0.0072 27 6 3.5525 -1.2113 0.0015 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5139 33 1 4.0315 4.4432 -0.8503 34 1 0.3903 -2.4157 0.0008 35 1 1.6259 -4.5441 0.0010 36 1 3.7112 -5.6705 0.5155 37 1 5.2526 -4.7804 0.5159 38 1 4.2305 -4.7883 -2.1169 39 1 5.5119 -6.9915 0.4399 40 1 6.7124 -9.0911 -0.0144 41 1 7.1229 -9.7993 -2.3355 42 1 6.4322 -9.6296 -4.6542 43 1 5.5933 -8.1777 -5.2515 44 1 7.8713 -8.2475 -5.9672 45 1 5.1142 -6.3205 -3.7652 46 1 5.3199 -2.4113 0.0125 47 1 4.0942 -0.2771 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191945396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:12 Heat of formation + Delta-G solvation = 8.674101 kcal Electronic energy + Delta-G solvation = -25888.794656 eV Core-core repulsion = 22229.055073 eV Total energy + Delta-G solvation = -3659.739583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72461 -39.06818 -37.15351 -36.25475 -34.84505 -32.78209 -31.56178 -30.95985 -30.56563 -28.55169 -27.87307 -26.27989 -25.76507 -24.23612 -22.57330 -22.29672 -21.64388 -20.60204 -19.68844 -17.68740 -17.38923 -16.74130 -16.54628 -16.22107 -15.63713 -15.40522 -14.86152 -14.60914 -14.48994 -14.19798 -13.93239 -13.75251 -13.59595 -13.46912 -13.28458 -13.02006 -12.94164 -12.44349 -12.19527 -12.07830 -11.97315 -11.51255 -11.48553 -11.31114 -11.04566 -10.96930 -10.84198 -10.73958 -10.36086 -10.33028 -10.07405 -9.95648 -9.84551 -8.97636 -8.91191 -8.55933 -8.40923 -7.36206 -6.58941 -6.09328 -4.23525 1.29444 1.60169 1.98430 1.99950 3.24351 3.29253 3.32085 3.59093 3.72486 4.04648 4.32137 4.35545 4.47299 4.75235 4.81279 5.03976 5.06710 5.11007 5.16039 5.22159 5.23532 5.36300 5.45489 5.53694 5.54600 5.65644 5.73074 5.80290 5.91400 5.95674 5.99154 6.17844 6.28387 6.29259 6.32215 6.46308 6.51614 6.59836 6.78715 6.84532 6.90949 7.07514 7.14409 7.26493 7.34942 7.38811 7.47566 7.74608 7.80622 8.07948 8.16401 8.36898 8.84626 9.43551 10.90081 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.002379 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.595887 B =11767.820538 C =13191.183294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.612 5.612 3 C 0.248 3.752 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.248 3.752 13 C -0.224 4.224 14 C -0.053 4.053 15 C -0.200 4.200 16 C 0.182 3.818 17 N -0.739 5.739 18 C 0.221 3.779 19 C -0.196 4.196 20 C -0.075 4.075 21 C -0.168 4.168 22 C -0.049 4.049 23 C 0.117 3.883 24 O -0.566 6.566 25 C -0.180 4.180 26 C -0.053 4.053 27 C -0.189 4.189 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.401 0.599 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.378 0.622 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -22.705 -1.801 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.317 5.317 3 C 0.128 3.872 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.140 3.860 13 C -0.247 4.247 14 C -0.072 4.072 15 C -0.204 4.204 16 C 0.059 3.941 17 N -0.367 5.367 18 C 0.116 3.884 19 C -0.218 4.218 20 C -0.094 4.094 21 C -0.189 4.189 22 C -0.050 4.050 23 C 0.040 3.960 24 O -0.372 6.372 25 C -0.202 4.202 26 C -0.072 4.072 27 C -0.212 4.212 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.225 0.775 45 H 0.136 0.864 46 H 0.131 0.869 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.631 -21.966 -0.919 22.045 hybrid contribution -0.021 0.519 -1.841 1.912 sum 1.610 -21.446 -2.759 21.683 Atomic orbital electron populations 1.21506 0.81344 1.02055 0.99846 1.47179 1.04533 1.04686 1.75268 1.19317 0.92110 0.78655 0.97091 1.21509 1.36715 1.06533 0.92517 0.92324 1.24962 0.95333 0.96245 0.97470 1.69916 1.38102 1.14398 1.30863 0.86571 0.78460 0.77925 0.84601 1.20219 1.21124 1.20068 1.18018 0.91554 0.86064 0.90376 1.20569 0.99156 0.91315 1.13708 1.20552 0.93141 0.96716 0.96822 1.19238 0.93543 0.93535 1.14037 1.19997 0.98197 0.93171 0.82742 1.45084 1.61475 1.22231 1.07957 1.17864 0.90807 0.86592 0.93152 1.20685 1.05994 0.97184 0.97984 1.20836 0.96695 0.95444 0.96383 1.20686 1.04594 1.01317 0.92274 1.19257 0.97236 0.94619 0.93847 1.20995 0.86098 0.96743 0.92190 1.86598 1.38901 1.77161 1.34498 1.20447 1.06521 0.98388 0.94892 1.20715 0.98801 0.91440 0.96267 1.20906 0.92671 0.98847 1.08762 0.94428 0.91305 0.92609 0.95079 0.94555 0.92507 0.86698 0.87244 0.92380 0.92271 0.76364 0.86077 0.86273 0.86771 0.92886 0.92911 0.77536 0.86361 0.86942 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 10.19 59.85 0.61 2.24 16 2 N -0.61 -12.70 2.99 -181.00 -0.54 -13.24 16 3 C 0.25 6.08 4.91 -5.20 -0.03 6.05 16 4 C -0.53 -14.31 9.39 -34.44 -0.32 -14.64 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.25 4.82 6.55 -83.79 -0.55 4.27 16 13 C -0.22 -3.70 9.21 -39.38 -0.36 -4.06 16 14 C -0.05 -0.77 9.69 -39.62 -0.38 -1.16 16 15 C -0.20 -2.89 5.25 -104.59 -0.55 -3.44 16 16 C 0.18 2.20 5.03 -5.20 -0.03 2.18 16 17 N -0.74 -9.07 5.73 -59.80 -0.34 -9.41 16 18 C 0.22 2.74 6.65 -83.78 -0.56 2.18 16 19 C -0.20 -2.25 9.31 -39.38 -0.37 -2.62 16 20 C -0.07 -0.79 10.04 -39.61 -0.40 -1.18 16 21 C -0.17 -1.81 9.70 -39.55 -0.38 -2.20 16 22 C -0.05 -0.55 5.51 -104.65 -0.58 -1.13 16 23 C 0.12 1.03 7.17 36.01 0.26 1.29 16 24 O -0.57 -5.50 13.64 -35.23 -0.48 -5.98 16 25 C -0.18 -2.18 9.55 -39.38 -0.38 -2.56 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 27 C -0.19 -3.68 9.21 -39.38 -0.36 -4.04 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 30 H 0.06 0.83 6.20 -51.93 -0.32 0.51 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.04 0.94 6.19 -51.93 -0.32 0.62 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.12 1.71 6.14 -52.49 -0.32 1.39 16 35 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 37 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 38 H 0.40 4.99 8.48 -40.82 -0.35 4.64 16 39 H 0.12 1.25 6.73 -52.49 -0.35 0.90 16 40 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 44 H 0.38 1.70 9.12 45.56 0.42 2.12 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 47 H 0.13 2.89 6.14 -52.49 -0.32 2.57 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -30.51 390.66 -10.77 -41.28 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.15 Total: 8.42 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -4.85 Total: -18.45 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.15 Total: -47.23 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.48 Total: -5.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.51 -10.77 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191945396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.953 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds