Wall clock time and date at job start Tue Mar 31 2020 14:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99785 * 2 1 4 4 C 1.50691 * 109.47030 * 270.00207 * 3 2 1 5 5 H 1.07999 * 120.00454 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99929 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99888 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00091 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47070 * 59.99629 * 8 6 4 10 10 H 1.48500 * 109.47296 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47006 * 299.99971 * 8 6 4 12 12 C 1.39674 * 119.99985 * 179.97438 * 2 1 3 13 13 C 1.38909 * 120.07426 * 0.02562 * 12 2 1 14 14 C 1.38101 * 119.92147 * 179.97438 * 13 12 2 15 15 C 1.38278 * 120.07915 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92957 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47276 * 89.99822 * 16 15 14 18 18 C 1.39675 * 119.99822 * 180.02562 * 17 16 15 19 19 C 1.38931 * 120.07638 * 359.72141 * 18 17 16 20 20 C 1.38084 * 119.92017 * 179.74601 * 19 18 17 21 21 C 1.38302 * 120.07782 * 0.55381 * 20 19 18 22 22 C 1.38261 * 120.15183 * 359.70144 * 21 20 19 23 23 C 1.50700 * 119.96595 * 180.02562 * 22 21 20 24 24 O 1.42897 * 109.47178 * 269.97512 * 23 22 21 25 25 C 1.38130 * 120.07450 * 0.02562 * 22 21 20 26 26 C 1.38285 * 120.14873 * 0.26914 * 15 14 13 27 27 C 1.38109 * 120.07516 * 359.45349 * 26 15 14 28 28 H 1.09005 * 109.47221 * 270.00014 * 1 2 3 29 29 H 1.09003 * 109.47324 * 29.99471 * 1 2 3 30 30 H 1.08999 * 109.47557 * 150.00090 * 1 2 3 31 31 H 1.09003 * 109.47224 * 29.99954 * 3 2 1 32 32 H 1.08999 * 109.46933 * 149.99847 * 3 2 1 33 33 H 0.97003 * 119.99826 * 179.97438 * 7 6 4 34 34 H 1.08002 * 120.04019 * 359.95610 * 13 12 2 35 35 H 1.08008 * 119.96375 * 179.97438 * 14 13 12 36 36 H 1.09004 * 109.47205 * 329.99797 * 16 15 14 37 37 H 1.09005 * 109.47240 * 210.00006 * 16 15 14 38 38 H 0.96999 * 119.99984 * 0.02562 * 17 16 15 39 39 H 1.07993 * 120.03794 * 0.02562 * 19 18 17 40 40 H 1.08005 * 119.96070 * 180.27477 * 20 19 18 41 41 H 1.08001 * 119.92834 * 179.71694 * 21 20 19 42 42 H 1.09003 * 109.47045 * 29.97643 * 23 22 21 43 43 H 1.09004 * 109.47121 * 149.97830 * 23 22 21 44 44 H 0.96697 * 114.00217 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.03771 * 180.02562 * 25 22 21 46 46 H 1.08004 * 119.96383 * 179.70290 * 26 15 14 47 47 H 1.07996 * 120.04227 * 180.26915 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4386 3.4165 -3.4339 9 1 2.1413 3.5943 -4.1342 10 1 4.1821 4.7020 -3.4339 11 1 4.2411 2.3812 -4.1336 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6076 0.0005 15 6 3.5468 -3.6059 0.0011 16 6 4.3004 -4.9109 0.0017 17 7 4.5451 -5.3342 -1.3793 18 6 5.2314 -6.5237 -1.6340 19 6 5.6877 -7.3038 -0.5788 20 6 6.3613 -8.4819 -0.8342 21 6 6.5918 -8.8798 -2.1385 22 6 6.1437 -8.1032 -3.1910 23 6 6.3967 -8.5410 -4.6106 24 8 7.6432 -8.0054 -5.0593 25 6 5.4643 -6.9264 -2.9427 26 6 4.2398 -2.4092 0.0072 27 6 3.5525 -1.2113 0.0015 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5139 33 1 4.0315 4.4432 -0.8503 34 1 0.3903 -2.4157 0.0008 35 1 1.6259 -4.5441 0.0010 36 1 3.7112 -5.6705 0.5155 37 1 5.2526 -4.7804 0.5159 38 1 4.2305 -4.7883 -2.1169 39 1 5.5119 -6.9915 0.4399 40 1 6.7124 -9.0911 -0.0144 41 1 7.1229 -9.7993 -2.3355 42 1 6.4322 -9.6296 -4.6542 43 1 5.5933 -8.1777 -5.2515 44 1 7.8713 -8.2475 -5.9672 45 1 5.1142 -6.3205 -3.7652 46 1 5.3199 -2.4113 0.0125 47 1 4.0942 -0.2771 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191945396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:12 Heat of formation + Delta-G solvation = -9.472171 kcal Electronic energy + Delta-G solvation = -25889.581537 eV Core-core repulsion = 22229.055073 eV Total energy + Delta-G solvation = -3660.526464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.71757 -40.25108 -38.05813 -37.40745 -35.95738 -34.74754 -32.34447 -32.11487 -31.95177 -29.83026 -29.44542 -27.27526 -26.83835 -25.77230 -23.94063 -23.24338 -23.04786 -21.54963 -20.99050 -18.66044 -18.42559 -18.33858 -17.91180 -17.19882 -16.94483 -16.48662 -16.30587 -15.83032 -15.50009 -15.36558 -15.19882 -15.07258 -14.56852 -14.39235 -14.34431 -14.25745 -14.20917 -14.01728 -13.33487 -13.28597 -13.19411 -13.06534 -12.88260 -12.70729 -12.55709 -12.34168 -12.24984 -12.01531 -11.80593 -11.70911 -11.49224 -10.95941 -10.89381 -10.66409 -10.50804 -9.73888 -9.73476 -8.39921 -8.25135 -7.87863 -6.39882 0.47310 0.64604 0.69530 0.76196 1.35625 1.37366 1.45498 2.31583 2.57497 2.61255 2.92029 3.04081 3.18569 3.67140 3.93867 4.01287 4.04418 4.14623 4.18556 4.29733 4.38416 4.42911 4.45736 4.56183 4.59031 4.61099 4.65771 4.69493 4.75110 4.83321 4.87864 4.98460 5.00221 5.05985 5.15347 5.17819 5.27278 5.44749 5.54034 5.59455 5.65335 5.66332 5.79019 5.84740 6.00726 6.04131 6.12849 6.45311 6.50960 6.78958 6.85406 6.88214 6.93148 7.31884 8.80729 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.002379 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.595887 B =11767.820538 C =13191.183294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.629 5.629 3 C 0.265 3.735 4 C -0.542 4.542 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.219 3.781 13 C -0.218 4.218 14 C -0.046 4.046 15 C -0.182 4.182 16 C 0.188 3.812 17 N -0.743 5.743 18 C 0.206 3.794 19 C -0.206 4.206 20 C -0.078 4.078 21 C -0.176 4.176 22 C -0.063 4.063 23 C 0.116 3.884 24 O -0.590 6.590 25 C -0.197 4.197 26 C -0.054 4.054 27 C -0.218 4.218 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.010 0.990 32 H 0.012 0.988 33 H 0.268 0.732 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.399 0.601 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.398 0.602 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -25.830 -2.586 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.336 5.336 3 C 0.144 3.856 4 C -0.581 4.581 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.199 1.199 12 C 0.114 3.886 13 C -0.240 4.240 14 C -0.065 4.065 15 C -0.185 4.185 16 C 0.065 3.935 17 N -0.371 5.371 18 C 0.102 3.898 19 C -0.229 4.229 20 C -0.096 4.096 21 C -0.196 4.196 22 C -0.064 4.064 23 C 0.039 3.961 24 O -0.400 6.400 25 C -0.220 4.220 26 C -0.074 4.074 27 C -0.240 4.240 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.233 0.767 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.248 0.752 45 H 0.135 0.865 46 H 0.140 0.860 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.340 -25.145 -1.717 25.239 hybrid contribution 0.145 1.307 -1.581 2.056 sum 1.485 -23.838 -3.298 24.111 Atomic orbital electron populations 1.21635 0.79248 1.02656 1.01120 1.47019 1.05756 1.03754 1.77082 1.18791 0.91120 0.80253 0.95462 1.21727 1.36535 1.06530 0.93287 0.93245 1.25774 0.95089 0.96342 1.01440 1.70025 1.38843 1.14824 1.32856 0.85574 0.78584 0.77550 0.79784 1.19292 1.20415 1.19927 1.18285 0.91632 0.86610 0.92106 1.20816 1.00231 0.90544 1.12445 1.20933 0.93198 0.97368 0.94970 1.19486 0.93881 0.93787 1.11318 1.19975 0.98381 0.92090 0.83048 1.44976 1.61993 1.22436 1.07707 1.18020 0.91375 0.86765 0.93624 1.20911 1.06167 0.97527 0.98273 1.21175 0.95957 0.95309 0.97177 1.21012 1.04345 1.01893 0.92347 1.19651 0.96831 0.94392 0.95512 1.21064 0.86118 0.97917 0.91002 1.86528 1.39278 1.77727 1.36435 1.20607 1.07313 0.99083 0.94986 1.20839 0.99388 0.91216 0.95931 1.20778 0.93231 0.98550 1.11491 0.92745 0.92485 0.90164 0.97167 0.97048 0.92355 0.84667 0.83803 0.90492 0.91879 0.76684 0.85043 0.83879 0.85038 0.90791 0.92024 0.75154 0.86455 0.86032 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.24 10.19 127.77 1.30 4.54 16 2 N -0.63 -26.92 2.99 -726.56 -2.17 -29.09 16 3 C 0.27 13.80 4.91 85.63 0.42 14.22 16 4 C -0.54 -30.23 9.39 25.60 0.24 -29.99 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 6 C 0.01 0.73 5.46 84.66 0.46 1.19 16 7 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 8 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.22 8.65 6.55 38.21 0.25 8.90 16 13 C -0.22 -6.76 9.21 22.40 0.21 -6.55 16 14 C -0.05 -1.19 9.69 22.25 0.22 -0.98 16 15 C -0.18 -4.88 5.25 -19.84 -0.10 -4.99 16 16 C 0.19 4.05 5.03 85.63 0.43 4.48 16 17 N -0.74 -16.83 5.73 -343.12 -1.96 -18.79 16 18 C 0.21 4.78 6.65 38.22 0.25 5.03 16 19 C -0.21 -4.28 9.31 22.40 0.21 -4.07 16 20 C -0.08 -1.44 10.04 22.25 0.22 -1.22 16 21 C -0.18 -3.39 9.70 22.29 0.22 -3.17 16 22 C -0.06 -1.33 5.51 -19.88 -0.11 -1.44 16 23 C 0.12 1.82 7.17 71.24 0.51 2.33 16 24 O -0.59 -10.49 13.64 -148.98 -2.03 -12.52 16 25 C -0.20 -4.57 9.55 22.40 0.21 -4.35 16 26 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 27 C -0.22 -8.86 9.21 22.40 0.21 -8.65 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 30 H 0.08 2.25 6.20 -2.39 -0.01 2.24 16 31 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 32 H 0.01 0.65 6.19 -2.39 -0.01 0.63 16 33 H 0.27 14.80 8.31 -92.71 -0.77 14.02 16 34 H 0.14 3.61 6.14 -2.91 -0.02 3.59 16 35 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.08 1.42 7.90 -2.38 -0.02 1.40 16 37 H 0.06 1.34 7.88 -2.38 -0.02 1.32 16 38 H 0.40 9.36 8.48 -92.71 -0.79 8.57 16 39 H 0.13 2.36 6.73 -2.91 -0.02 2.34 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 43 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 44 H 0.40 2.89 9.12 -74.06 -0.68 2.21 16 45 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 46 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 47 H 0.10 4.56 6.14 -2.91 -0.02 4.54 16 Total: -1.00 -67.94 390.66 1.03 -66.90 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.47 Total: 27.72 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 5.36 Total: -26.28 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.85 Total: -101.84 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -2.03 Total: -12.52 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.94 1.03 -66.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191945396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.429 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds