Wall clock time and date at job start Tue Mar 31 2020 14:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99658 * 2 1 4 4 C 1.50694 * 109.47163 * 269.99674 * 3 2 1 5 5 H 1.08006 * 120.00077 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00564 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99450 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00319 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46720 * 90.00529 * 8 6 4 10 10 H 1.48501 * 109.46876 * 209.99756 * 8 6 4 11 11 H 1.48495 * 109.47486 * 330.00249 * 8 6 4 12 12 C 1.34772 * 120.00247 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00026 * 180.02562 * 12 2 1 14 14 C 1.50705 * 120.00088 * 0.02562 * 12 2 1 15 15 C 1.52995 * 109.46803 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.46923 * 179.20288 * 15 14 12 17 17 C 1.46410 * 111.00286 * 61.42990 * 16 15 14 18 18 C 1.53271 * 109.77593 * 161.82395 * 17 16 15 19 19 S 1.81894 * 108.41384 * 62.16553 * 18 17 16 20 20 C 1.81765 * 102.00834 * 308.78150 * 19 18 17 21 21 H 1.08998 * 109.62149 * 171.47580 * 20 19 18 22 22 C 1.52952 * 109.52443 * 291.78374 * 20 19 18 23 23 C 1.53042 * 109.31657 * 179.77862 * 22 20 19 24 24 C 1.52963 * 109.60435 * 300.31264 * 23 22 20 25 25 C 1.53006 * 109.64237 * 59.48001 * 24 23 22 26 26 C 1.46615 * 110.99797 * 295.32062 * 16 15 14 27 27 H 1.09004 * 109.99154 * 77.06688 * 26 16 15 28 28 H 1.08993 * 109.47384 * 269.99840 * 1 2 3 29 29 H 1.08995 * 109.47114 * 30.00584 * 1 2 3 30 30 H 1.09008 * 109.46754 * 150.00118 * 1 2 3 31 31 H 1.09002 * 109.47122 * 29.99619 * 3 2 1 32 32 H 1.08998 * 109.47287 * 149.99089 * 3 2 1 33 33 H 0.97006 * 119.99965 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46721 * 59.99456 * 14 12 2 35 35 H 1.09000 * 109.46888 * 299.99305 * 14 12 2 36 36 H 1.09002 * 109.47682 * 59.20471 * 15 14 12 37 37 H 1.08994 * 109.47474 * 299.20064 * 15 14 12 38 38 H 1.09009 * 109.42103 * 281.91597 * 17 16 15 39 39 H 1.09000 * 109.42304 * 41.72783 * 17 16 15 40 40 H 1.09001 * 109.67591 * 302.43598 * 18 17 16 41 41 H 1.09001 * 109.67933 * 181.89671 * 18 17 16 42 42 H 1.09000 * 109.49674 * 299.73111 * 22 20 19 43 43 H 1.09001 * 109.50064 * 59.79416 * 22 20 19 44 44 H 1.09002 * 109.45045 * 60.34980 * 23 22 20 45 45 H 1.09002 * 109.45040 * 180.29623 * 23 22 20 46 46 H 1.09000 * 109.44296 * 179.53251 * 24 23 22 47 47 H 1.09008 * 109.44078 * 299.46032 * 24 23 22 48 48 H 1.09008 * 109.51124 * 59.72237 * 25 24 23 49 49 H 1.08993 * 109.51488 * 179.82781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5522 3.6187 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.3077 4.2590 -3.9015 10 1 4.6978 4.2004 -3.4960 11 1 3.5562 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6351 0.0005 16 7 1.6455 -4.9073 0.0198 17 6 0.8044 -5.0458 -1.1706 18 6 0.4149 -6.5157 -1.3622 19 16 -0.5582 -7.0450 0.0805 20 6 0.5037 -6.5294 1.4627 21 1 -0.0334 -6.6536 2.4030 22 6 1.7722 -7.3839 1.4792 23 6 2.6651 -6.9423 2.6410 24 6 3.0373 -5.4684 2.4708 25 6 1.7663 -4.6169 2.4430 26 6 0.8890 -5.0584 1.2666 27 1 -0.0120 -4.4459 1.2323 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1386 0.5140 33 1 4.0291 4.4447 -0.8505 34 1 0.7591 -2.5302 -0.8897 35 1 0.7586 -2.5299 0.8904 36 1 3.0159 -3.5694 0.8833 37 1 2.9970 -3.5854 -0.8965 38 1 -0.0970 -4.4448 -1.0494 39 1 1.3547 -4.6996 -2.0455 40 1 1.3144 -7.1263 -1.4422 41 1 -0.1831 -6.6220 -2.2672 42 1 1.5028 -8.4325 1.6056 43 1 2.3087 -7.2569 0.5388 44 1 2.1296 -7.0751 3.5811 45 1 3.5723 -7.5464 2.6516 46 1 3.6662 -5.1545 3.3038 47 1 3.5817 -5.3374 1.5356 48 1 1.2184 -4.7501 3.3759 49 1 2.0340 -3.5670 2.3248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245546868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:40 Heat of formation + Delta-G solvation = -37.110737 kcal Electronic energy + Delta-G solvation = -27163.305881 eV Core-core repulsion = 23637.024870 eV Total energy + Delta-G solvation = -3526.281011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40405 -38.79764 -36.08807 -34.84884 -32.87243 -32.52029 -30.79603 -30.49358 -28.69181 -27.43704 -25.78025 -24.25196 -23.21757 -22.64637 -22.61475 -21.14392 -18.92595 -18.38777 -17.06871 -16.69496 -16.57455 -16.03420 -15.61918 -15.48009 -15.06323 -14.84317 -14.64564 -14.25785 -13.95599 -13.58685 -13.28113 -13.13265 -12.87226 -12.72309 -12.62363 -12.36161 -12.28319 -12.14556 -12.01361 -11.91985 -11.64694 -11.60339 -11.27978 -11.21686 -10.97931 -10.88139 -10.68919 -10.60221 -10.46416 -10.36003 -10.18522 -9.65909 -9.61730 -8.98905 -8.48333 -8.44630 -7.87847 -7.67962 -6.07080 -4.12044 1.58983 2.29715 3.27688 3.33809 3.36138 3.41609 3.54991 3.97028 4.35184 4.42357 4.50203 4.68277 4.72498 4.91218 4.96417 4.98488 5.02532 5.12568 5.12873 5.17910 5.19274 5.23484 5.27882 5.30705 5.49084 5.50197 5.52053 5.60015 5.66355 5.69603 5.77793 5.84312 5.92241 5.98524 5.99353 6.06001 6.08695 6.16329 6.23911 6.38183 6.83676 6.93034 7.02551 7.40911 7.50417 7.89035 8.20450 8.38256 8.86864 9.05730 9.53189 11.01009 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002939 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.140400 B = 9523.376526 C =10001.210148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.507 3.493 13 O -0.542 6.542 14 C -0.177 4.177 15 C 0.069 3.931 16 N -0.537 5.537 17 C 0.051 3.949 18 C -0.072 4.072 19 S -0.282 6.282 20 C -0.032 4.032 21 H 0.107 0.893 22 C -0.103 4.103 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.120 4.120 26 C 0.090 3.910 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 -21.638 4.883 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.292 3.708 13 O -0.420 6.420 14 C -0.219 4.219 15 C -0.058 4.058 16 N -0.260 5.260 17 C -0.078 4.078 18 C -0.220 4.220 19 S -0.052 6.052 20 C -0.161 4.161 21 H 0.125 0.875 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.020 4.020 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.072 -22.370 4.899 24.281 hybrid contribution 0.417 1.719 -1.046 2.055 sum -7.655 -20.651 3.853 22.359 Atomic orbital electron populations 1.21614 0.81577 1.02459 1.00305 1.48185 1.06096 1.07991 1.71243 1.19280 0.92527 0.78122 0.97491 1.21420 1.36585 1.06277 0.92270 0.92555 1.24943 0.95338 0.96383 0.97466 1.69933 1.38381 1.14296 1.30744 0.86492 0.77712 0.78591 0.84606 1.20638 1.21030 1.19902 1.20194 0.88054 0.84955 0.77550 1.90674 1.13813 1.87266 1.50233 1.22394 1.00662 0.95398 1.03400 1.22138 0.95059 0.83549 1.05089 1.61488 1.29054 1.34474 1.01021 1.22245 0.96881 0.94620 0.94063 1.23508 1.02185 0.98939 0.97416 1.86858 1.33611 1.81301 1.03446 1.23316 0.97966 0.97220 0.97626 0.87533 1.21714 0.94332 0.97803 1.00358 1.21501 0.99218 0.96555 0.97809 1.21517 0.97005 0.94268 1.02720 1.21858 0.96718 1.00615 0.96760 1.21819 0.95751 0.94042 0.90368 0.92589 0.93842 0.90779 0.92678 0.95117 0.93835 0.92688 0.89645 0.89793 0.88574 0.89665 0.93168 0.89382 0.89059 0.87755 0.91841 0.90235 0.92496 0.91891 0.92240 0.90338 0.91421 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.59 2.86 -182.96 -0.52 -13.11 16 3 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.51 10.10 7.67 -10.99 -0.08 10.01 16 13 O -0.54 -13.12 15.56 5.55 0.09 -13.03 16 14 C -0.18 -2.43 3.40 -27.88 -0.09 -2.52 16 15 C 0.07 0.88 3.58 -3.83 -0.01 0.87 16 16 N -0.54 -5.52 2.98 -226.75 -0.68 -6.19 16 17 C 0.05 0.49 4.50 -3.95 -0.02 0.47 16 18 C -0.07 -0.63 6.33 37.30 0.24 -0.39 16 19 S -0.28 -2.83 21.79 -107.50 -2.34 -5.18 16 20 C -0.03 -0.29 2.74 -26.59 -0.07 -0.37 16 21 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.10 -0.89 4.98 -26.73 -0.13 -1.02 16 23 C -0.11 -0.90 5.92 -26.73 -0.16 -1.06 16 24 C -0.12 -1.10 5.37 -26.75 -0.14 -1.24 16 25 C -0.12 -1.15 4.78 -26.60 -0.13 -1.27 16 26 C 0.09 0.87 1.44 -67.57 -0.10 0.77 16 27 H 0.06 0.58 7.17 -51.93 -0.37 0.21 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 30 H 0.05 0.71 6.44 -51.92 -0.33 0.37 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.09 1.09 6.16 -51.93 -0.32 0.77 16 35 H 0.08 1.03 6.29 -51.93 -0.33 0.70 16 36 H 0.10 1.32 4.76 -51.93 -0.25 1.07 16 37 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 38 H 0.05 0.50 7.19 -51.92 -0.37 0.13 16 39 H 0.09 0.83 7.88 -51.93 -0.41 0.43 16 40 H 0.09 0.80 7.56 -51.93 -0.39 0.41 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.78 6.64 -51.93 -0.34 0.44 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.84 6.38 -51.92 -0.33 0.51 16 48 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 49 H 0.08 0.84 5.60 -51.93 -0.29 0.55 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -31.75 373.18 -10.97 -42.71 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.31 Total: -0.72 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.54 Total: -1.05 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.46 Total: -45.14 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.34 Total: -5.18 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.75 -10.97 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245546868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.601 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds