Wall clock time and date at job start Tue Mar 31 2020 14:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99658 * 2 1 4 4 C 1.50694 * 109.47163 * 269.99674 * 3 2 1 5 5 H 1.08006 * 120.00077 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00564 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99450 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00319 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46720 * 90.00529 * 8 6 4 10 10 H 1.48501 * 109.46876 * 209.99756 * 8 6 4 11 11 H 1.48495 * 109.47486 * 330.00249 * 8 6 4 12 12 C 1.34772 * 120.00247 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00026 * 180.02562 * 12 2 1 14 14 C 1.50705 * 120.00088 * 0.02562 * 12 2 1 15 15 C 1.52995 * 109.46803 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.46923 * 179.20288 * 15 14 12 17 17 C 1.46410 * 111.00286 * 61.42990 * 16 15 14 18 18 C 1.53271 * 109.77593 * 161.82395 * 17 16 15 19 19 S 1.81894 * 108.41384 * 62.16553 * 18 17 16 20 20 C 1.81765 * 102.00834 * 308.78150 * 19 18 17 21 21 H 1.08998 * 109.62149 * 171.47580 * 20 19 18 22 22 C 1.52952 * 109.52443 * 291.78374 * 20 19 18 23 23 C 1.53042 * 109.31657 * 179.77862 * 22 20 19 24 24 C 1.52963 * 109.60435 * 300.31264 * 23 22 20 25 25 C 1.53006 * 109.64237 * 59.48001 * 24 23 22 26 26 C 1.46615 * 110.99797 * 295.32062 * 16 15 14 27 27 H 1.09004 * 109.99154 * 77.06688 * 26 16 15 28 28 H 1.08993 * 109.47384 * 269.99840 * 1 2 3 29 29 H 1.08995 * 109.47114 * 30.00584 * 1 2 3 30 30 H 1.09008 * 109.46754 * 150.00118 * 1 2 3 31 31 H 1.09002 * 109.47122 * 29.99619 * 3 2 1 32 32 H 1.08998 * 109.47287 * 149.99089 * 3 2 1 33 33 H 0.97006 * 119.99965 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46721 * 59.99456 * 14 12 2 35 35 H 1.09000 * 109.46888 * 299.99305 * 14 12 2 36 36 H 1.09002 * 109.47682 * 59.20471 * 15 14 12 37 37 H 1.08994 * 109.47474 * 299.20064 * 15 14 12 38 38 H 1.09009 * 109.42103 * 281.91597 * 17 16 15 39 39 H 1.09000 * 109.42304 * 41.72783 * 17 16 15 40 40 H 1.09001 * 109.67591 * 302.43598 * 18 17 16 41 41 H 1.09001 * 109.67933 * 181.89671 * 18 17 16 42 42 H 1.09000 * 109.49674 * 299.73111 * 22 20 19 43 43 H 1.09001 * 109.50064 * 59.79416 * 22 20 19 44 44 H 1.09002 * 109.45045 * 60.34980 * 23 22 20 45 45 H 1.09002 * 109.45040 * 180.29623 * 23 22 20 46 46 H 1.09000 * 109.44296 * 179.53251 * 24 23 22 47 47 H 1.09008 * 109.44078 * 299.46032 * 24 23 22 48 48 H 1.09008 * 109.51124 * 59.72237 * 25 24 23 49 49 H 1.08993 * 109.51488 * 179.82781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5522 3.6187 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.3077 4.2590 -3.9015 10 1 4.6978 4.2004 -3.4960 11 1 3.5562 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6351 0.0005 16 7 1.6455 -4.9073 0.0198 17 6 0.8044 -5.0458 -1.1706 18 6 0.4149 -6.5157 -1.3622 19 16 -0.5582 -7.0450 0.0805 20 6 0.5037 -6.5294 1.4627 21 1 -0.0334 -6.6536 2.4030 22 6 1.7722 -7.3839 1.4792 23 6 2.6651 -6.9423 2.6410 24 6 3.0373 -5.4684 2.4708 25 6 1.7663 -4.6169 2.4430 26 6 0.8890 -5.0584 1.2666 27 1 -0.0120 -4.4459 1.2323 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1386 0.5140 33 1 4.0291 4.4447 -0.8505 34 1 0.7591 -2.5302 -0.8897 35 1 0.7586 -2.5299 0.8904 36 1 3.0159 -3.5694 0.8833 37 1 2.9970 -3.5854 -0.8965 38 1 -0.0970 -4.4448 -1.0494 39 1 1.3547 -4.6996 -2.0455 40 1 1.3144 -7.1263 -1.4422 41 1 -0.1831 -6.6220 -2.2672 42 1 1.5028 -8.4325 1.6056 43 1 2.3087 -7.2569 0.5388 44 1 2.1296 -7.0751 3.5811 45 1 3.5723 -7.5464 2.6516 46 1 3.6662 -5.1545 3.3038 47 1 3.5817 -5.3374 1.5356 48 1 1.2184 -4.7501 3.3759 49 1 2.0340 -3.5670 2.3248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245546868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:39 Heat of formation + Delta-G solvation = -55.393704 kcal Electronic energy + Delta-G solvation = -27164.098690 eV Core-core repulsion = 23637.024870 eV Total energy + Delta-G solvation = -3527.073820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39002 -40.24952 -36.96742 -36.55710 -34.76489 -33.63805 -31.65273 -31.37763 -30.07728 -28.84711 -27.30062 -25.59249 -24.27442 -23.88891 -23.38078 -22.11092 -20.09345 -19.53955 -18.72268 -18.04098 -17.86299 -17.15578 -17.03255 -16.42706 -16.41234 -16.04491 -15.83080 -15.64665 -14.75448 -14.63082 -14.32679 -14.29062 -14.00471 -13.84064 -13.66051 -13.60096 -13.46997 -13.40255 -13.27075 -13.02406 -12.96873 -12.82736 -12.63475 -12.50812 -12.40720 -12.22355 -12.01926 -11.88662 -11.72328 -11.45421 -11.25000 -11.10617 -10.66165 -10.64197 -10.35909 -9.44049 -9.34810 -8.64997 -8.24358 -6.39556 0.86712 1.35176 1.38142 1.48425 1.57496 1.81877 2.29226 2.42788 2.75842 3.05137 3.57695 3.72167 3.80016 3.90055 3.94099 4.05185 4.07386 4.18924 4.26250 4.30166 4.32491 4.34227 4.46045 4.50503 4.51770 4.60609 4.66180 4.76079 4.79875 4.81399 4.90838 4.91773 4.92311 5.00237 5.05038 5.18757 5.20907 5.25181 5.28320 5.35448 5.38940 5.53685 5.61252 5.81671 5.94349 6.03983 6.10406 6.67426 6.77354 7.26385 7.46817 8.82698 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002939 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.140400 B = 9523.376526 C =10001.210148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.498 3.502 13 O -0.595 6.595 14 C -0.155 4.155 15 C 0.081 3.919 16 N -0.532 5.532 17 C 0.049 3.951 18 C -0.063 4.063 19 S -0.305 6.305 20 C -0.025 4.025 21 H 0.116 0.884 22 C -0.097 4.097 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.118 4.118 26 C 0.091 3.909 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.021 0.979 32 H -0.002 1.002 33 H 0.267 0.733 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 -23.090 4.221 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.287 3.713 13 O -0.476 6.476 14 C -0.196 4.196 15 C -0.048 4.048 16 N -0.255 5.255 17 C -0.080 4.080 18 C -0.211 4.211 19 S -0.075 6.075 20 C -0.154 4.154 21 H 0.134 0.866 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.154 4.154 25 C -0.157 4.157 26 C -0.018 4.018 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.039 0.961 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.944 -23.848 4.241 26.184 hybrid contribution 0.980 2.142 -0.786 2.483 sum -8.965 -21.705 3.455 23.736 Atomic orbital electron populations 1.21889 0.78105 1.03799 1.02421 1.48224 1.08284 1.06576 1.71260 1.18733 0.91058 0.80454 0.95985 1.21697 1.36920 1.06574 0.93024 0.92915 1.25877 0.94878 0.96416 1.02037 1.70053 1.38924 1.14768 1.33071 0.85403 0.78100 0.78231 0.79011 1.18815 1.20595 1.19706 1.21245 0.87807 0.86410 0.75876 1.90643 1.16455 1.88144 1.52371 1.22319 1.00429 0.91613 1.05282 1.21907 0.94845 0.84341 1.03675 1.61479 1.29610 1.32547 1.01861 1.22309 0.96704 0.95363 0.93626 1.23491 1.02167 0.98084 0.97381 1.86962 1.34383 1.81572 1.04547 1.23309 0.97953 0.96526 0.97635 0.86591 1.21647 0.94033 0.98058 0.99903 1.21464 0.99486 0.95468 0.98114 1.21480 0.96829 0.95301 1.01787 1.21833 0.96907 0.99503 0.97482 1.21847 0.95466 0.94651 0.89866 0.92565 0.91277 0.91629 0.89154 0.96093 0.98392 0.92369 0.87671 0.87444 0.89763 0.91516 0.92892 0.89241 0.89097 0.86310 0.91294 0.91518 0.91295 0.91440 0.92247 0.92138 0.89900 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.61 -25.67 2.86 -851.14 -2.43 -28.10 16 3 C 0.26 14.05 5.16 85.63 0.44 14.49 16 4 C -0.54 -31.44 9.39 25.60 0.24 -31.20 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 8 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.50 20.02 7.67 87.66 0.67 20.69 16 13 O -0.59 -30.04 15.56 -3.05 -0.05 -30.09 16 14 C -0.15 -4.03 3.40 29.85 0.10 -3.92 16 15 C 0.08 2.02 3.58 86.30 0.31 2.33 16 16 N -0.53 -10.19 2.98 -871.30 -2.59 -12.78 16 17 C 0.05 0.84 4.50 86.49 0.39 1.23 16 18 C -0.06 -0.96 6.33 72.07 0.46 -0.51 16 19 S -0.30 -5.44 21.79 -56.49 -1.23 -6.67 16 20 C -0.03 -0.40 2.74 30.69 0.08 -0.32 16 21 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 22 C -0.10 -1.49 4.98 30.59 0.15 -1.34 16 23 C -0.11 -1.52 5.92 30.60 0.18 -1.34 16 24 C -0.12 -2.07 5.37 30.58 0.16 -1.91 16 25 C -0.12 -2.08 4.78 30.68 0.15 -1.93 16 26 C 0.09 1.58 1.44 45.16 0.07 1.64 16 27 H 0.06 1.00 7.17 -2.39 -0.02 0.98 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.09 2.01 6.44 -2.38 -0.02 1.99 16 31 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 32 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 33 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 34 H 0.11 2.37 6.16 -2.39 -0.01 2.36 16 35 H 0.11 2.34 6.29 -2.39 -0.02 2.32 16 36 H 0.08 2.35 4.76 -2.39 -0.01 2.34 16 37 H 0.07 1.93 8.01 -2.39 -0.02 1.92 16 38 H 0.05 0.89 7.19 -2.38 -0.02 0.88 16 39 H 0.09 1.53 7.88 -2.39 -0.02 1.51 16 40 H 0.09 1.43 7.56 -2.39 -0.02 1.41 16 41 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.22 6.64 -2.39 -0.02 1.20 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 1.30 6.38 -2.38 -0.02 1.28 16 48 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.06 1.25 5.60 -2.39 -0.01 1.24 16 Total: -1.00 -71.37 373.18 2.11 -69.26 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.92 Total: 15.12 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.17 Total: 2.43 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -4.74 Total: -96.95 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -1.23 Total: -6.67 kcal Total: -71.37 2.11 -69.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245546868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.866 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds