Wall clock time and date at job start Tue Mar 31 2020 14:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00102 * 2 1 4 4 C 1.50702 * 109.46778 * 90.00047 * 3 2 1 5 5 H 1.07993 * 120.00331 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99555 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00210 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00014 * 180.27363 * 6 4 3 9 9 H 1.48501 * 109.47599 * 179.72535 * 8 6 4 10 10 H 1.48508 * 109.47177 * 299.72574 * 8 6 4 11 11 H 1.48501 * 109.47191 * 59.72097 * 8 6 4 12 12 C 1.34778 * 120.00256 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00059 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99820 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47463 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.47216 * 179.97438 * 15 14 12 17 17 C 1.46417 * 111.00025 * 297.08606 * 16 15 14 18 18 C 1.53344 * 109.70852 * 161.93693 * 17 16 15 19 19 S 1.81870 * 108.44076 * 62.13614 * 18 17 16 20 20 C 1.81965 * 101.98298 * 308.63712 * 19 18 17 21 21 H 1.09005 * 110.43597 * 290.94886 * 20 19 18 22 22 C 1.53026 * 108.91697 * 170.37893 * 20 19 18 23 23 C 1.52948 * 109.61801 * 181.58426 * 22 20 19 24 24 C 1.53018 * 109.33892 * 60.19905 * 23 22 20 25 25 C 1.52938 * 109.35583 * 299.77010 * 24 23 22 26 26 C 1.46614 * 110.99841 * 170.99511 * 16 15 14 27 27 H 1.09001 * 109.45805 * 77.72573 * 26 16 15 28 28 H 1.09002 * 109.46689 * 90.00152 * 1 2 3 29 29 H 1.08997 * 109.47084 * 210.00274 * 1 2 3 30 30 H 1.09001 * 109.46855 * 330.00113 * 1 2 3 31 31 H 1.08998 * 109.47011 * 329.99882 * 3 2 1 32 32 H 1.09003 * 109.46892 * 209.99535 * 3 2 1 33 33 H 0.97000 * 120.00030 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47066 * 300.00322 * 14 12 2 35 35 H 1.09007 * 109.46741 * 59.99559 * 14 12 2 36 36 H 1.09001 * 109.46876 * 300.00335 * 15 14 12 37 37 H 1.08998 * 109.46731 * 59.99839 * 15 14 12 38 38 H 1.09001 * 109.42674 * 282.04442 * 17 16 15 39 39 H 1.08996 * 109.43105 * 41.87769 * 17 16 15 40 40 H 1.09002 * 109.64837 * 302.44932 * 18 17 16 41 41 H 1.08993 * 109.63267 * 181.81900 * 18 17 16 42 42 H 1.08996 * 109.44240 * 61.54122 * 22 20 19 43 43 H 1.09005 * 109.43868 * 301.61653 * 22 20 19 44 44 H 1.09005 * 109.48953 * 300.23730 * 23 22 20 45 45 H 1.08996 * 109.50992 * 180.17617 * 23 22 20 46 46 H 1.09001 * 109.48880 * 179.81065 * 24 23 22 47 47 H 1.08999 * 109.51745 * 59.75120 * 24 23 22 48 48 H 1.08993 * 109.44576 * 300.15276 * 25 24 23 49 49 H 1.09001 * 109.41518 * 180.23929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0974 1.0962 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.5534 3.6181 0.6732 8 14 3.4441 3.4134 3.4339 9 1 4.1908 4.6970 3.4340 10 1 2.1491 3.5940 4.1379 11 1 4.2452 2.3747 4.1301 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0005 16 7 1.6451 -4.9074 0.0011 17 6 0.8441 -5.0502 1.2185 18 6 -0.2308 -6.1232 1.0072 19 16 0.5962 -7.7107 0.6854 20 6 1.7526 -7.2706 -0.6488 21 1 1.2081 -7.0494 -1.5668 22 6 2.7078 -8.4427 -0.8842 23 6 3.7129 -8.0746 -1.9767 24 6 4.5155 -6.8491 -1.5348 25 6 3.5626 -5.6752 -1.3046 26 6 2.5531 -6.0384 -0.2131 27 1 3.0834 -6.2589 0.7134 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6085 2.0284 -0.5138 32 1 3.1500 1.1384 -0.5138 33 1 4.0296 4.4444 0.8504 34 1 0.7584 -2.5298 0.8902 35 1 0.7590 -2.5302 -0.8897 36 1 3.0063 -3.5775 -0.8895 37 1 3.0062 -3.5775 0.8905 38 1 1.4909 -5.3421 2.0458 39 1 0.3658 -4.0990 1.4515 40 1 -0.8537 -5.8550 0.1539 41 1 -0.8467 -6.2058 1.9027 42 1 2.1380 -9.3182 -1.1954 43 1 3.2416 -8.6668 0.0394 44 1 3.1797 -7.8468 -2.8997 45 1 4.3903 -8.9118 -2.1451 46 1 5.2351 -6.5866 -2.3103 47 1 5.0448 -7.0748 -0.6090 48 1 3.0318 -5.4519 -2.2299 49 1 4.1338 -4.8004 -0.9938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245546871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:43 Heat of formation + Delta-G solvation = -40.282602 kcal Electronic energy + Delta-G solvation = -26498.904697 eV Core-core repulsion = 22972.486144 eV Total energy + Delta-G solvation = -3526.418553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95196 -38.85023 -36.64793 -34.83116 -32.73335 -32.24654 -31.16691 -30.89296 -28.54626 -27.40991 -25.76886 -24.21544 -23.36438 -22.87769 -22.01606 -20.47560 -20.05444 -18.41814 -17.17227 -16.59285 -16.40652 -16.00474 -15.44301 -15.21258 -15.12930 -14.84919 -14.76805 -14.55663 -14.22223 -13.77655 -13.48371 -13.28068 -12.91897 -12.57861 -12.56500 -12.36326 -12.22039 -12.19607 -12.00435 -11.84224 -11.61858 -11.51600 -11.48688 -11.16696 -11.05804 -10.93091 -10.87319 -10.57145 -10.48956 -10.29069 -10.17689 -9.74823 -9.66221 -8.92142 -8.53882 -8.45027 -7.88228 -7.65841 -6.05976 -4.10982 1.55085 2.31192 3.29941 3.34558 3.35448 3.41152 3.43472 4.05203 4.30638 4.43162 4.49521 4.57234 4.67864 4.81399 4.89852 4.91118 4.95873 5.08059 5.10737 5.15411 5.18901 5.24252 5.27365 5.33123 5.44210 5.48115 5.56515 5.58661 5.62539 5.71303 5.77028 5.82067 5.83793 5.85704 5.90824 5.94625 6.04963 6.09966 6.15998 6.19734 6.84421 6.90507 7.04786 7.42625 7.52316 7.90182 8.21702 8.40488 8.88002 9.07692 9.54114 11.02069 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002701 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.786580 B =10364.117053 C =10912.283633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.137 4.137 15 C 0.070 3.930 16 N -0.551 5.551 17 C 0.049 3.951 18 C -0.072 4.072 19 S -0.283 6.283 20 C -0.029 4.029 21 H 0.096 0.904 22 C -0.100 4.100 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.121 4.121 26 C 0.095 3.905 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 -23.059 -4.145 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.423 6.423 14 C -0.178 4.178 15 C -0.057 4.057 16 N -0.275 5.275 17 C -0.081 4.081 18 C -0.220 4.220 19 S -0.054 6.054 20 C -0.158 4.158 21 H 0.114 0.886 22 C -0.140 4.140 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.015 4.015 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.328 -23.854 -4.034 25.007 hybrid contribution 0.578 1.620 1.177 2.084 sum -5.750 -22.234 -2.857 23.143 Atomic orbital electron populations 1.21629 0.81456 1.02485 1.00423 1.48162 1.06174 1.07890 1.71270 1.19278 0.92548 0.78134 0.97440 1.21390 1.36660 1.06273 0.92284 0.92602 1.24939 0.95343 0.96383 0.97435 1.69923 1.38331 1.14337 1.30796 0.86562 0.78371 0.77841 0.84657 1.21129 1.20255 1.20187 1.20264 0.88063 0.85123 0.77496 1.90665 1.13961 1.87352 1.50338 1.21712 0.99304 0.92866 1.03869 1.21922 0.94825 0.85918 1.03045 1.61200 1.26519 1.02521 1.37283 1.22330 0.95170 0.99327 0.91240 1.23504 0.99590 0.93428 1.05505 1.86883 1.49603 1.19125 1.49792 1.23297 0.96866 0.97332 0.98353 0.88562 1.21395 0.96443 0.96127 0.99996 1.21544 0.97548 0.98132 0.98119 1.21553 0.97795 0.94690 1.01737 1.21848 0.96617 0.98692 0.98890 1.21788 0.91831 0.89394 0.98472 0.92764 0.93719 0.92515 0.90841 0.95048 0.93859 0.92636 0.89669 0.88883 0.88768 0.93711 0.93371 0.89036 0.88986 0.87648 0.91023 0.91040 0.91578 0.91404 0.91287 0.91801 0.90765 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.64 2.86 -182.95 -0.52 -13.16 16 3 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 4 C -0.53 -14.97 9.39 -34.44 -0.32 -15.30 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.50 10.20 7.67 -10.98 -0.08 10.12 16 13 O -0.54 -13.40 15.56 5.56 0.09 -13.32 16 14 C -0.14 -1.94 4.15 -27.88 -0.12 -2.05 16 15 C 0.07 0.95 3.62 -3.83 -0.01 0.93 16 16 N -0.55 -6.16 4.32 -226.87 -0.98 -7.14 16 17 C 0.05 0.50 5.30 -3.91 -0.02 0.48 16 18 C -0.07 -0.66 6.69 37.34 0.25 -0.41 16 19 S -0.28 -2.95 21.72 -107.50 -2.34 -5.29 16 20 C -0.03 -0.28 2.67 -26.59 -0.07 -0.35 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 C -0.10 -0.80 5.16 -26.74 -0.14 -0.94 16 23 C -0.11 -0.80 5.93 -26.75 -0.16 -0.96 16 24 C -0.12 -0.96 5.93 -26.75 -0.16 -1.12 16 25 C -0.12 -1.19 4.27 -26.74 -0.11 -1.30 16 26 C 0.09 0.99 1.80 -67.71 -0.12 0.87 16 27 H 0.05 0.63 7.92 -51.93 -0.41 0.22 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 34 H 0.09 1.07 5.40 -51.93 -0.28 0.79 16 35 H 0.09 1.17 8.11 -51.92 -0.42 0.75 16 36 H 0.09 1.34 5.56 -51.93 -0.29 1.05 16 37 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.05 0.53 7.92 -51.93 -0.41 0.12 16 39 H 0.09 0.89 5.71 -51.93 -0.30 0.60 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.89 6.15 -51.93 -0.32 0.57 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -32.33 382.60 -11.45 -43.78 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.60 Total: -1.49 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.58 Total: -0.08 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.77 Total: -46.21 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.34 Total: -5.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.33 -11.45 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245546871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.497 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds