Wall clock time and date at job start Tue Mar 31 2020 14:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00102 * 2 1 4 4 C 1.50702 * 109.46778 * 90.00047 * 3 2 1 5 5 H 1.07993 * 120.00331 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99555 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00210 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00014 * 180.27363 * 6 4 3 9 9 H 1.48501 * 109.47599 * 179.72535 * 8 6 4 10 10 H 1.48508 * 109.47177 * 299.72574 * 8 6 4 11 11 H 1.48501 * 109.47191 * 59.72097 * 8 6 4 12 12 C 1.34778 * 120.00256 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00059 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99820 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47463 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.47216 * 179.97438 * 15 14 12 17 17 C 1.46417 * 111.00025 * 297.08606 * 16 15 14 18 18 C 1.53344 * 109.70852 * 161.93693 * 17 16 15 19 19 S 1.81870 * 108.44076 * 62.13614 * 18 17 16 20 20 C 1.81965 * 101.98298 * 308.63712 * 19 18 17 21 21 H 1.09005 * 110.43597 * 290.94886 * 20 19 18 22 22 C 1.53026 * 108.91697 * 170.37893 * 20 19 18 23 23 C 1.52948 * 109.61801 * 181.58426 * 22 20 19 24 24 C 1.53018 * 109.33892 * 60.19905 * 23 22 20 25 25 C 1.52938 * 109.35583 * 299.77010 * 24 23 22 26 26 C 1.46614 * 110.99841 * 170.99511 * 16 15 14 27 27 H 1.09001 * 109.45805 * 77.72573 * 26 16 15 28 28 H 1.09002 * 109.46689 * 90.00152 * 1 2 3 29 29 H 1.08997 * 109.47084 * 210.00274 * 1 2 3 30 30 H 1.09001 * 109.46855 * 330.00113 * 1 2 3 31 31 H 1.08998 * 109.47011 * 329.99882 * 3 2 1 32 32 H 1.09003 * 109.46892 * 209.99535 * 3 2 1 33 33 H 0.97000 * 120.00030 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47066 * 300.00322 * 14 12 2 35 35 H 1.09007 * 109.46741 * 59.99559 * 14 12 2 36 36 H 1.09001 * 109.46876 * 300.00335 * 15 14 12 37 37 H 1.08998 * 109.46731 * 59.99839 * 15 14 12 38 38 H 1.09001 * 109.42674 * 282.04442 * 17 16 15 39 39 H 1.08996 * 109.43105 * 41.87769 * 17 16 15 40 40 H 1.09002 * 109.64837 * 302.44932 * 18 17 16 41 41 H 1.08993 * 109.63267 * 181.81900 * 18 17 16 42 42 H 1.08996 * 109.44240 * 61.54122 * 22 20 19 43 43 H 1.09005 * 109.43868 * 301.61653 * 22 20 19 44 44 H 1.09005 * 109.48953 * 300.23730 * 23 22 20 45 45 H 1.08996 * 109.50992 * 180.17617 * 23 22 20 46 46 H 1.09001 * 109.48880 * 179.81065 * 24 23 22 47 47 H 1.08999 * 109.51745 * 59.75120 * 24 23 22 48 48 H 1.08993 * 109.44576 * 300.15276 * 25 24 23 49 49 H 1.09001 * 109.41518 * 180.23929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0974 1.0962 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.5534 3.6181 0.6732 8 14 3.4441 3.4134 3.4339 9 1 4.1908 4.6970 3.4340 10 1 2.1491 3.5940 4.1379 11 1 4.2452 2.3747 4.1301 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0005 16 7 1.6451 -4.9074 0.0011 17 6 0.8441 -5.0502 1.2185 18 6 -0.2308 -6.1232 1.0072 19 16 0.5962 -7.7107 0.6854 20 6 1.7526 -7.2706 -0.6488 21 1 1.2081 -7.0494 -1.5668 22 6 2.7078 -8.4427 -0.8842 23 6 3.7129 -8.0746 -1.9767 24 6 4.5155 -6.8491 -1.5348 25 6 3.5626 -5.6752 -1.3046 26 6 2.5531 -6.0384 -0.2131 27 1 3.0834 -6.2589 0.7134 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6085 2.0284 -0.5138 32 1 3.1500 1.1384 -0.5138 33 1 4.0296 4.4444 0.8504 34 1 0.7584 -2.5298 0.8902 35 1 0.7590 -2.5302 -0.8897 36 1 3.0063 -3.5775 -0.8895 37 1 3.0062 -3.5775 0.8905 38 1 1.4909 -5.3421 2.0458 39 1 0.3658 -4.0990 1.4515 40 1 -0.8537 -5.8550 0.1539 41 1 -0.8467 -6.2058 1.9027 42 1 2.1380 -9.3182 -1.1954 43 1 3.2416 -8.6668 0.0394 44 1 3.1797 -7.8468 -2.8997 45 1 4.3903 -8.9118 -2.1451 46 1 5.2351 -6.5866 -2.3103 47 1 5.0448 -7.0748 -0.6090 48 1 3.0318 -5.4519 -2.2299 49 1 4.1338 -4.8004 -0.9938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245546871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:42 Heat of formation + Delta-G solvation = -59.821386 kcal Electronic energy + Delta-G solvation = -26499.751963 eV Core-core repulsion = 22972.486144 eV Total energy + Delta-G solvation = -3527.265819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.03455 -40.22675 -37.50335 -36.58135 -34.76126 -33.32550 -32.10505 -31.62614 -30.04447 -28.74757 -27.27218 -25.60297 -24.39626 -23.90462 -23.15625 -21.39304 -20.83139 -19.93295 -18.71612 -18.21466 -17.64184 -17.16537 -16.90289 -16.53900 -16.13464 -16.03963 -15.81765 -15.62407 -15.27868 -14.96549 -14.42856 -14.22523 -14.18396 -13.86996 -13.81017 -13.50171 -13.44732 -13.36710 -13.19716 -13.08312 -12.97936 -12.79028 -12.62439 -12.42671 -12.36962 -12.24224 -12.20185 -11.94421 -11.73265 -11.56218 -11.28469 -11.08877 -10.65713 -10.60469 -10.52917 -9.50818 -9.41576 -8.69606 -8.23773 -6.38986 0.79629 1.35150 1.39379 1.46713 1.55556 1.83883 2.22877 2.38649 2.75176 3.05620 3.52053 3.67666 3.79581 3.86206 3.90560 3.97843 4.06349 4.13163 4.19509 4.26942 4.30492 4.36141 4.38802 4.43114 4.48890 4.54335 4.72400 4.76992 4.79733 4.83178 4.84855 4.90638 4.95852 4.98280 5.02285 5.03824 5.12740 5.15342 5.22299 5.23050 5.27263 5.45555 5.54805 5.83321 5.85607 6.00846 6.04804 6.68263 6.79160 7.26900 7.48149 8.83085 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002701 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.786580 B =10364.117053 C =10912.283633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.278 1.278 10 H -0.259 1.259 11 H -0.278 1.278 12 C 0.495 3.505 13 O -0.600 6.600 14 C -0.117 4.117 15 C 0.079 3.921 16 N -0.543 5.543 17 C 0.046 3.954 18 C -0.061 4.061 19 S -0.312 6.312 20 C -0.019 4.019 21 H 0.096 0.904 22 C -0.097 4.097 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.118 4.118 26 C 0.096 3.904 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.023 0.977 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -24.522 -3.617 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.184 1.184 11 H -0.204 1.204 12 C 0.283 3.717 13 O -0.482 6.482 14 C -0.157 4.157 15 C -0.048 4.048 16 N -0.267 5.267 17 C -0.083 4.083 18 C -0.210 4.210 19 S -0.082 6.082 20 C -0.148 4.148 21 H 0.114 0.886 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.014 4.014 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.037 0.963 38 H 0.055 0.945 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.349 -25.343 -3.510 26.912 hybrid contribution 1.189 2.062 0.978 2.573 sum -7.159 -23.281 -2.532 24.488 Atomic orbital electron populations 1.21938 0.77780 1.04002 1.02630 1.48198 1.08471 1.06382 1.71167 1.18739 0.91080 0.80523 0.95943 1.21684 1.36958 1.06555 0.93074 0.92858 1.25872 0.94897 0.96433 1.01997 1.70045 1.38891 1.14791 1.33122 0.85478 0.78884 0.77362 0.79151 1.20310 1.18360 1.20378 1.21334 0.87787 0.86669 0.75861 1.90636 1.16722 1.88253 1.52614 1.21620 0.98867 0.88911 1.06274 1.21715 0.94545 0.87147 1.01436 1.61249 1.26078 1.01625 1.37776 1.22411 0.95201 1.00331 0.90364 1.23516 0.99042 0.91801 1.06622 1.87010 1.50188 1.20589 1.50439 1.23260 0.96658 0.97173 0.97722 0.88567 1.21398 0.96353 0.95762 1.00110 1.21516 0.97404 0.97966 0.97819 1.21548 0.97655 0.94509 1.01889 1.21799 0.96637 0.98734 0.98569 1.21800 0.91962 0.89613 0.98000 0.94253 0.91108 0.88625 0.91717 0.95920 0.98520 0.92365 0.87116 0.86069 0.89845 0.96275 0.94476 0.87956 0.88233 0.85982 0.90235 0.91629 0.91001 0.89850 0.90612 0.92152 0.90664 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -25.57 2.86 -851.12 -2.43 -28.00 16 3 C 0.26 14.04 5.16 85.63 0.44 14.48 16 4 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.41 5.46 84.65 0.46 0.87 16 7 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 8 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 C 0.49 20.07 7.67 87.66 0.67 20.75 16 13 O -0.60 -30.84 15.56 -3.02 -0.05 -30.89 16 14 C -0.12 -3.07 4.15 29.85 0.12 -2.95 16 15 C 0.08 2.12 3.62 86.30 0.31 2.44 16 16 N -0.54 -11.43 4.32 -871.70 -3.77 -15.20 16 17 C 0.05 0.85 5.30 86.51 0.46 1.31 16 18 C -0.06 -0.97 6.69 72.10 0.48 -0.48 16 19 S -0.31 -5.99 21.72 -56.49 -1.23 -7.22 16 20 C -0.02 -0.33 2.67 30.69 0.08 -0.25 16 21 H 0.10 1.72 8.14 -2.38 -0.02 1.71 16 22 C -0.10 -1.40 5.16 30.59 0.16 -1.25 16 23 C -0.11 -1.32 5.93 30.58 0.18 -1.14 16 24 C -0.12 -1.81 5.93 30.58 0.18 -1.63 16 25 C -0.12 -2.30 4.27 30.59 0.13 -2.17 16 26 C 0.10 1.94 1.80 45.07 0.08 2.02 16 27 H 0.04 0.92 7.92 -2.39 -0.02 0.90 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 30 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 31 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.11 2.39 5.40 -2.39 -0.01 2.38 16 35 H 0.12 2.60 8.11 -2.38 -0.02 2.58 16 36 H 0.08 2.43 5.56 -2.39 -0.01 2.42 16 37 H 0.02 0.60 8.10 -2.39 -0.02 0.58 16 38 H 0.04 0.78 7.92 -2.39 -0.02 0.77 16 39 H 0.10 1.67 5.71 -2.39 -0.01 1.66 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.06 1.37 6.15 -2.39 -0.01 1.36 16 Total: -1.00 -73.44 382.60 1.07 -72.37 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.91 Total: 13.92 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.32 Total: 4.28 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -5.91 Total: -99.45 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.23 Total: -7.22 kcal Total: -73.44 1.07 -72.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245546871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.550 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds