Wall clock time and date at job start Tue Mar 31 2020 14:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 120.00000 * 2 1 4 4 C 1.50693 * 109.47500 * 270.00285 * 3 2 1 5 5 H 1.08002 * 120.00037 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99979 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99604 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00110 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47249 * 89.99626 * 8 6 4 10 10 H 1.48496 * 109.46922 * 209.99709 * 8 6 4 11 11 H 1.48497 * 109.46901 * 329.99850 * 8 6 4 12 12 C 1.39679 * 119.99497 * 180.02562 * 2 1 3 13 13 C 1.38906 * 120.07827 * 359.97438 * 12 2 1 14 14 C 1.38103 * 119.92821 * 179.97438 * 13 12 2 15 15 C 1.38288 * 120.06970 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.92176 * 180.02562 * 15 14 13 17 17 N 1.46892 * 109.47063 * 90.00223 * 16 15 14 18 18 C 1.46900 * 111.00155 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47242 * 180.02562 * 18 17 16 20 20 C 1.38169 * 120.02482 * 259.99780 * 19 18 17 21 21 C 1.38242 * 120.05457 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.11401 * 359.97438 * 21 20 19 23 23 C 1.38122 * 120.05026 * 0.02562 * 22 21 20 24 24 C 1.38711 * 120.02969 * 80.02221 * 19 18 17 25 25 O 1.35897 * 120.05660 * 359.97438 * 24 19 18 26 26 C 1.38286 * 120.15180 * 0.28178 * 15 14 13 27 27 C 1.38101 * 120.07176 * 359.44702 * 26 15 14 28 28 H 1.08998 * 109.46660 * 269.99602 * 1 2 3 29 29 H 1.09002 * 109.47012 * 29.99238 * 1 2 3 30 30 H 1.08996 * 109.47396 * 149.99208 * 1 2 3 31 31 H 1.09002 * 109.47253 * 30.00785 * 3 2 1 32 32 H 1.09006 * 109.46621 * 150.00355 * 3 2 1 33 33 H 0.97002 * 119.99633 * 180.02562 * 7 6 4 34 34 H 1.08006 * 120.03365 * 359.95058 * 13 12 2 35 35 H 1.07990 * 119.96484 * 179.97438 * 14 13 12 36 36 H 1.08999 * 109.47099 * 330.00297 * 16 15 14 37 37 H 1.09000 * 109.46722 * 210.00330 * 16 15 14 38 38 H 1.00895 * 111.00439 * 303.95380 * 17 16 15 39 39 H 1.08991 * 109.47142 * 59.99631 * 18 17 16 40 40 H 1.09008 * 109.47120 * 299.99781 * 18 17 16 41 41 H 1.07998 * 119.97385 * 0.02562 * 20 19 18 42 42 H 1.07997 * 119.94707 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.97026 * 179.74858 * 22 21 20 44 44 H 1.08002 * 120.02294 * 179.97438 * 23 22 21 45 45 H 0.96699 * 113.99705 * 90.00409 * 25 24 19 46 46 H 1.07996 * 119.96064 * 179.70506 * 26 15 14 47 47 H 1.08009 * 120.03769 * 180.27496 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8776 -1.6726 7 7 3.3465 3.2570 -2.9125 8 14 3.7352 3.9280 -0.2527 9 1 5.1085 3.5057 0.1228 10 1 3.7511 5.3548 -0.6639 11 1 2.8294 3.7585 0.9118 12 6 2.1634 -1.2097 -0.0005 13 6 1.4704 -2.4136 -0.0005 14 6 2.1639 -3.6078 -0.0016 15 6 3.5468 -3.6060 -0.0032 16 6 4.3002 -4.9112 -0.0050 17 7 4.5435 -5.3342 -1.3905 18 6 5.2771 -6.6063 -1.4314 19 6 5.5081 -7.0070 -2.8656 20 6 4.6923 -7.9507 -3.4598 21 6 4.9041 -8.3192 -4.7753 22 6 5.9320 -7.7442 -5.5000 23 6 6.7502 -6.8004 -4.9106 24 6 6.5402 -6.4292 -3.5902 25 8 7.3439 -5.5008 -3.0081 26 6 4.2398 -2.4093 0.0021 27 6 3.5524 -1.2116 -0.0025 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0284 0.5140 32 1 3.1500 1.1383 0.5138 33 1 3.8240 4.0826 -3.0897 34 1 0.3903 -2.4156 0.0007 35 1 1.6257 -4.5441 -0.0012 36 1 3.7117 -5.6711 0.5090 37 1 5.2532 -4.7812 0.5079 38 1 3.6785 -5.3994 -1.9058 39 1 4.6950 -7.3778 -0.9275 40 1 6.2369 -6.4886 -0.9283 41 1 3.8886 -8.4009 -2.8961 42 1 4.2651 -9.0567 -5.2381 43 1 6.0979 -8.0367 -6.5263 44 1 7.5531 -6.3519 -5.4769 45 1 8.1228 -5.8727 -2.5723 46 1 5.3198 -2.4115 0.0057 47 1 4.0943 -0.2772 -0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263667888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:35 Heat of formation + Delta-G solvation = 22.855021 kcal Electronic energy + Delta-G solvation = -26257.473344 eV Core-core repulsion = 22598.348692 eV Total energy + Delta-G solvation = -3659.124652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04716 -39.05557 -36.76461 -36.60751 -35.15484 -32.64864 -31.85888 -30.50966 -30.14434 -29.38985 -28.28790 -26.38477 -24.82882 -23.51467 -22.75699 -21.93696 -21.46381 -21.32463 -19.54215 -18.46349 -16.91859 -16.82822 -16.32186 -16.21614 -15.54744 -15.34018 -14.99465 -14.64556 -14.32978 -14.26796 -14.06407 -13.83897 -13.55568 -13.18618 -13.04630 -12.89146 -12.59602 -12.45287 -12.36676 -12.11056 -11.86654 -11.76958 -11.56900 -11.45007 -11.41481 -10.99055 -10.72430 -10.58378 -10.47480 -10.22599 -10.03540 -9.55932 -9.13781 -8.89098 -8.72508 -8.62567 -8.31357 -8.25432 -6.38893 -6.11127 -4.11091 1.05610 1.11103 2.10412 2.20848 3.24254 3.31739 3.32362 3.42372 4.06906 4.09320 4.30642 4.35151 4.59092 4.61431 4.76451 4.84471 5.02045 5.19009 5.23628 5.27074 5.29698 5.36115 5.47490 5.55285 5.60793 5.69682 5.77517 5.78825 5.83362 5.98404 6.04935 6.13664 6.24742 6.25663 6.33275 6.35041 6.40650 6.57479 6.62255 6.77421 6.77817 6.97450 7.09079 7.09142 7.30589 7.45811 7.55333 7.57653 7.60013 8.07315 8.36718 8.54471 8.96868 9.48565 11.01997 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002567 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.750003 B =10903.458632 C =11892.418090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.612 5.612 3 C 0.221 3.779 4 C -0.534 4.534 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.241 3.759 13 C -0.218 4.218 14 C -0.068 4.068 15 C -0.169 4.169 16 C 0.117 3.883 17 N -0.672 5.672 18 C 0.106 3.894 19 C -0.111 4.111 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.105 4.105 23 C -0.150 4.150 24 C 0.133 3.867 25 O -0.482 6.482 26 C -0.048 4.048 27 C -0.188 4.188 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.342 0.658 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.384 0.616 46 H 0.113 0.887 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 -23.876 2.827 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.317 5.317 3 C 0.100 3.900 4 C -0.573 4.573 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.135 3.865 13 C -0.242 4.242 14 C -0.087 4.087 15 C -0.172 4.172 16 C -0.011 4.011 17 N -0.303 5.303 18 C -0.023 4.023 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.169 4.169 24 C 0.087 3.913 25 O -0.291 6.291 26 C -0.067 4.067 27 C -0.211 4.211 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.160 0.840 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.239 0.761 46 H 0.131 0.869 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.845 -22.710 2.462 23.164 hybrid contribution -0.030 -0.134 0.772 0.784 sum 3.815 -22.844 3.234 23.385 Atomic orbital electron populations 1.21487 0.81066 1.02314 0.99639 1.46714 1.04383 1.03950 1.76699 1.19654 0.91902 0.80680 0.97810 1.21481 1.36954 1.07238 0.91630 0.90557 1.24904 0.95410 0.97259 0.95461 1.69907 1.41186 1.23494 1.18647 0.86911 0.79965 0.80164 0.83061 1.19865 1.20977 1.19053 1.17919 0.91480 0.85845 0.91273 1.20504 0.98981 0.91302 1.13364 1.20511 0.93323 0.96514 0.98397 1.19180 0.93074 0.93936 1.11002 1.20653 0.98594 0.93306 0.88533 1.60518 1.26881 1.29019 1.13894 1.20686 0.99360 0.90581 0.91623 1.20204 0.97266 0.97014 0.96752 1.20983 0.98585 0.97116 0.95198 1.21114 0.98549 1.00967 0.94499 1.21034 0.95156 0.96327 0.99793 1.21488 1.01515 0.98592 0.95291 1.18293 0.92483 0.89310 0.91169 1.84967 1.38375 1.31909 1.73890 1.20645 0.98856 0.91265 0.95957 1.20839 0.92583 0.98752 1.08877 0.94582 0.91283 0.92426 0.95478 0.95495 0.92522 0.86850 0.87669 0.95542 0.90982 0.84012 0.94930 0.90430 0.85951 0.85937 0.85799 0.85450 0.76076 0.86879 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.19 59.85 0.61 2.33 16 2 N -0.61 -13.03 2.99 -181.00 -0.54 -13.57 16 3 C 0.22 5.28 3.98 -5.20 -0.02 5.26 16 4 C -0.53 -15.12 9.94 -34.44 -0.34 -15.47 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 8 Si 0.87 21.01 27.47 -169.99 -4.67 16.34 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 12 C 0.24 4.91 6.55 -83.79 -0.55 4.37 16 13 C -0.22 -3.82 9.21 -39.38 -0.36 -4.18 16 14 C -0.07 -1.06 9.69 -39.61 -0.38 -1.44 16 15 C -0.17 -2.66 5.40 -104.58 -0.56 -3.22 16 16 C 0.12 1.48 5.81 -4.98 -0.03 1.45 16 17 N -0.67 -8.60 6.48 -116.34 -0.75 -9.36 16 18 C 0.11 1.09 5.48 -4.98 -0.03 1.06 16 19 C -0.11 -1.18 5.41 -104.47 -0.56 -1.74 16 20 C -0.10 -0.92 9.67 -39.61 -0.38 -1.31 16 21 C -0.13 -1.14 10.04 -39.56 -0.40 -1.54 16 22 C -0.10 -0.93 10.04 -39.60 -0.40 -1.32 16 23 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 24 C 0.13 1.49 6.68 -39.22 -0.26 1.23 16 25 O -0.48 -5.46 12.74 -19.42 -0.25 -5.70 16 26 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 27 C -0.19 -3.86 9.21 -39.38 -0.36 -4.22 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 31 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 32 H 0.03 0.64 5.63 -51.93 -0.29 0.35 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.11 1.78 6.14 -52.48 -0.32 1.46 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 37 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.34 4.49 8.71 -39.29 -0.34 4.15 16 39 H 0.03 0.29 8.00 -51.93 -0.42 -0.13 16 40 H 0.08 0.75 7.85 -51.92 -0.41 0.35 16 41 H 0.12 0.91 8.04 -52.49 -0.42 0.49 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.38 2.39 9.06 45.56 0.41 2.80 16 46 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 47 H 0.13 2.81 6.14 -52.48 -0.32 2.49 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -33.34 388.76 -10.68 -44.02 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.19 Total: 8.95 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -4.91 Total: -19.91 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.52 Total: -49.56 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.25 Total: -5.70 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.34 -10.68 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263667888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.874 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds