Wall clock time and date at job start Tue Mar 31 2020 14:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 120.00000 * 2 1 4 4 C 1.50693 * 109.47500 * 270.00285 * 3 2 1 5 5 H 1.08002 * 120.00037 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99979 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99604 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00110 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47249 * 89.99626 * 8 6 4 10 10 H 1.48496 * 109.46922 * 209.99709 * 8 6 4 11 11 H 1.48497 * 109.46901 * 329.99850 * 8 6 4 12 12 C 1.39679 * 119.99497 * 180.02562 * 2 1 3 13 13 C 1.38906 * 120.07827 * 359.97438 * 12 2 1 14 14 C 1.38103 * 119.92821 * 179.97438 * 13 12 2 15 15 C 1.38288 * 120.06970 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.92176 * 180.02562 * 15 14 13 17 17 N 1.46892 * 109.47063 * 90.00223 * 16 15 14 18 18 C 1.46900 * 111.00155 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47242 * 180.02562 * 18 17 16 20 20 C 1.38169 * 120.02482 * 259.99780 * 19 18 17 21 21 C 1.38242 * 120.05457 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.11401 * 359.97438 * 21 20 19 23 23 C 1.38122 * 120.05026 * 0.02562 * 22 21 20 24 24 C 1.38711 * 120.02969 * 80.02221 * 19 18 17 25 25 O 1.35897 * 120.05660 * 359.97438 * 24 19 18 26 26 C 1.38286 * 120.15180 * 0.28178 * 15 14 13 27 27 C 1.38101 * 120.07176 * 359.44702 * 26 15 14 28 28 H 1.08998 * 109.46660 * 269.99602 * 1 2 3 29 29 H 1.09002 * 109.47012 * 29.99238 * 1 2 3 30 30 H 1.08996 * 109.47396 * 149.99208 * 1 2 3 31 31 H 1.09002 * 109.47253 * 30.00785 * 3 2 1 32 32 H 1.09006 * 109.46621 * 150.00355 * 3 2 1 33 33 H 0.97002 * 119.99633 * 180.02562 * 7 6 4 34 34 H 1.08006 * 120.03365 * 359.95058 * 13 12 2 35 35 H 1.07990 * 119.96484 * 179.97438 * 14 13 12 36 36 H 1.08999 * 109.47099 * 330.00297 * 16 15 14 37 37 H 1.09000 * 109.46722 * 210.00330 * 16 15 14 38 38 H 1.00895 * 111.00439 * 303.95380 * 17 16 15 39 39 H 1.08991 * 109.47142 * 59.99631 * 18 17 16 40 40 H 1.09008 * 109.47120 * 299.99781 * 18 17 16 41 41 H 1.07998 * 119.97385 * 0.02562 * 20 19 18 42 42 H 1.07997 * 119.94707 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.97026 * 179.74858 * 22 21 20 44 44 H 1.08002 * 120.02294 * 179.97438 * 23 22 21 45 45 H 0.96699 * 113.99705 * 90.00409 * 25 24 19 46 46 H 1.07996 * 119.96064 * 179.70506 * 26 15 14 47 47 H 1.08009 * 120.03769 * 180.27496 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8776 -1.6726 7 7 3.3465 3.2570 -2.9125 8 14 3.7352 3.9280 -0.2527 9 1 5.1085 3.5057 0.1228 10 1 3.7511 5.3548 -0.6639 11 1 2.8294 3.7585 0.9118 12 6 2.1634 -1.2097 -0.0005 13 6 1.4704 -2.4136 -0.0005 14 6 2.1639 -3.6078 -0.0016 15 6 3.5468 -3.6060 -0.0032 16 6 4.3002 -4.9112 -0.0050 17 7 4.5435 -5.3342 -1.3905 18 6 5.2771 -6.6063 -1.4314 19 6 5.5081 -7.0070 -2.8656 20 6 4.6923 -7.9507 -3.4598 21 6 4.9041 -8.3192 -4.7753 22 6 5.9320 -7.7442 -5.5000 23 6 6.7502 -6.8004 -4.9106 24 6 6.5402 -6.4292 -3.5902 25 8 7.3439 -5.5008 -3.0081 26 6 4.2398 -2.4093 0.0021 27 6 3.5524 -1.2116 -0.0025 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0284 0.5140 32 1 3.1500 1.1383 0.5138 33 1 3.8240 4.0826 -3.0897 34 1 0.3903 -2.4156 0.0007 35 1 1.6257 -4.5441 -0.0012 36 1 3.7117 -5.6711 0.5090 37 1 5.2532 -4.7812 0.5079 38 1 3.6785 -5.3994 -1.9058 39 1 4.6950 -7.3778 -0.9275 40 1 6.2369 -6.4886 -0.9283 41 1 3.8886 -8.4009 -2.8961 42 1 4.2651 -9.0567 -5.2381 43 1 6.0979 -8.0367 -6.5263 44 1 7.5531 -6.3519 -5.4769 45 1 8.1228 -5.8727 -2.5723 46 1 5.3198 -2.4115 0.0057 47 1 4.0943 -0.2772 -0.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263667888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:34 Heat of formation + Delta-G solvation = 0.605827 kcal Electronic energy + Delta-G solvation = -26258.438141 eV Core-core repulsion = 22598.348692 eV Total energy + Delta-G solvation = -3660.089449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79485 -40.43456 -37.92712 -37.47078 -36.36961 -34.71705 -32.83994 -31.98409 -31.06421 -30.49428 -29.96621 -27.54641 -26.15978 -24.85011 -23.46997 -23.36288 -22.93862 -22.12200 -20.99748 -19.22814 -19.08916 -18.21775 -17.27179 -17.01167 -16.80462 -16.39998 -16.17400 -15.96673 -15.58506 -15.47314 -15.19938 -14.96830 -14.77014 -14.72719 -14.35176 -14.21251 -14.00803 -13.46640 -13.37228 -13.25358 -13.15998 -13.02904 -12.82517 -12.75303 -12.60900 -12.42071 -12.16886 -12.08473 -11.92244 -11.74530 -11.45569 -11.23676 -10.83190 -10.44180 -9.81698 -9.67444 -9.47089 -9.19380 -8.34137 -7.91500 -6.39616 0.34061 0.40812 0.70294 0.83805 1.33118 1.34585 1.45021 2.29859 2.53792 2.71520 2.99651 3.06655 3.41032 3.65710 3.86042 3.98116 4.05846 4.13301 4.21090 4.22568 4.37462 4.41885 4.46998 4.59389 4.61711 4.64393 4.70385 4.73596 4.77533 4.79234 4.82751 4.90598 5.03584 5.05746 5.08633 5.10799 5.29575 5.45073 5.46058 5.57788 5.59495 5.60249 5.64362 5.92503 5.98156 6.08465 6.16232 6.25213 6.50139 6.59283 6.69222 6.86866 6.96171 7.25814 8.83561 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002567 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.750003 B =10903.458632 C =11892.418090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.537 4.537 5 H 0.023 0.977 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.242 1.242 12 C 0.211 3.789 13 C -0.216 4.216 14 C -0.062 4.062 15 C -0.158 4.158 16 C 0.123 3.877 17 N -0.691 5.691 18 C 0.111 3.889 19 C -0.126 4.126 20 C -0.103 4.103 21 C -0.137 4.137 22 C -0.108 4.108 23 C -0.168 4.168 24 C 0.112 3.888 25 O -0.504 6.504 26 C -0.057 4.057 27 C -0.219 4.219 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.268 0.732 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.339 0.661 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.401 0.599 46 H 0.119 0.881 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -26.427 4.545 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.576 4.576 5 H 0.041 0.959 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.165 1.165 12 C 0.106 3.894 13 C -0.239 4.239 14 C -0.081 4.081 15 C -0.161 4.161 16 C -0.005 4.005 17 N -0.322 5.322 18 C -0.017 4.017 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.155 4.155 22 C -0.126 4.126 23 C -0.187 4.187 24 C 0.067 3.933 25 O -0.316 6.316 26 C -0.076 4.076 27 C -0.241 4.241 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.157 0.843 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.259 0.741 46 H 0.137 0.863 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.095 -25.315 4.199 25.847 hybrid contribution 0.227 0.457 0.113 0.523 sum 3.322 -24.858 4.312 25.447 Atomic orbital electron populations 1.21638 0.79085 1.02487 1.01355 1.46699 1.05656 1.03271 1.78100 1.19327 0.92582 0.82481 0.94675 1.21672 1.36544 1.06680 0.92685 0.95906 1.25903 0.95461 0.98819 0.98566 1.70076 1.42674 1.24450 1.21460 0.85713 0.79828 0.77777 0.79664 1.19131 1.20410 1.16513 1.18211 0.91586 0.86595 0.92963 1.20803 1.00111 0.90733 1.12206 1.20938 0.93350 0.97352 0.96432 1.19562 0.93619 0.94519 1.08377 1.20615 0.98795 0.92089 0.88979 1.60450 1.26968 1.30976 1.13791 1.20678 0.99336 0.89879 0.91786 1.20326 0.97581 0.97770 0.97065 1.21270 0.98640 0.96588 0.95668 1.21466 0.98533 1.01098 0.94395 1.21356 0.94789 0.95637 1.00856 1.21680 1.02321 0.99424 0.95251 1.18564 0.93125 0.89787 0.91842 1.84904 1.39428 1.33028 1.74278 1.20804 0.99333 0.91392 0.96115 1.20802 0.93217 0.98661 1.11453 0.91885 0.92626 0.90797 0.94523 0.95416 0.92311 0.84821 0.83831 0.92993 0.90613 0.84326 0.92951 0.90306 0.84014 0.83504 0.83718 0.85118 0.74122 0.86328 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.31 10.19 127.77 1.30 4.61 16 2 N -0.63 -27.09 2.99 -726.55 -2.17 -29.27 16 3 C 0.23 11.32 3.98 85.63 0.34 11.66 16 4 C -0.54 -31.82 9.94 25.60 0.25 -31.57 16 5 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 6 C 0.01 0.62 5.47 84.65 0.46 1.08 16 7 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 8 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 12 C 0.21 8.64 6.55 38.21 0.25 8.89 16 13 C -0.22 -7.15 9.21 22.40 0.21 -6.94 16 14 C -0.06 -1.73 9.69 22.25 0.22 -1.52 16 15 C -0.16 -4.65 5.40 -19.84 -0.11 -4.76 16 16 C 0.12 2.76 5.81 85.56 0.50 3.26 16 17 N -0.69 -16.24 6.48 -522.00 -3.38 -19.62 16 18 C 0.11 2.03 5.48 85.56 0.47 2.50 16 19 C -0.13 -2.49 5.41 -19.77 -0.11 -2.59 16 20 C -0.10 -1.66 9.67 22.25 0.22 -1.45 16 21 C -0.14 -2.03 10.04 22.28 0.22 -1.81 16 22 C -0.11 -1.74 10.04 22.26 0.22 -1.52 16 23 C -0.17 -3.32 9.99 22.37 0.22 -3.10 16 24 C 0.11 2.46 6.68 22.51 0.15 2.62 16 25 O -0.50 -11.48 12.74 -92.39 -1.18 -12.66 16 26 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 27 C -0.22 -9.27 9.21 22.40 0.21 -9.06 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.07 2.22 6.20 -2.39 -0.01 2.21 16 31 H 0.04 1.71 7.13 -2.39 -0.02 1.69 16 32 H 0.03 1.35 5.63 -2.38 -0.01 1.34 16 33 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 34 H 0.13 3.80 6.14 -2.91 -0.02 3.79 16 35 H 0.14 2.97 8.06 -2.92 -0.02 2.94 16 36 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 37 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 38 H 0.34 8.14 8.71 -89.70 -0.78 7.35 16 39 H 0.05 0.75 8.00 -2.39 -0.02 0.73 16 40 H 0.08 1.39 7.85 -2.38 -0.02 1.38 16 41 H 0.14 1.65 8.04 -2.91 -0.02 1.62 16 42 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.40 5.06 9.06 -74.06 -0.67 4.39 16 46 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 47 H 0.10 4.63 6.14 -2.91 -0.02 4.61 16 Total: -1.00 -76.09 388.76 0.17 -75.92 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.52 Total: 31.41 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 5.24 Total: -31.53 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -5.26 Total: -109.05 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.18 Total: -12.66 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -76.09 0.17 -75.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263667888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.523 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds