Wall clock time and date at job start Tue Mar 31 2020 14:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46506 * 120.00086 * 2 1 4 4 C 1.50696 * 109.46958 * 269.99613 * 3 2 1 5 5 C 1.39370 * 119.51084 * 270.28890 * 4 3 2 6 6 C 1.36098 * 120.99091 * 180.28202 * 5 4 3 7 7 C 1.40536 * 119.65063 * 359.71066 * 6 5 4 8 8 C 1.40540 * 121.28217 * 180.02562 * 7 6 5 9 9 C 1.36091 * 119.65665 * 180.02562 * 8 7 6 10 10 C 1.39376 * 120.98533 * 359.95297 * 9 8 7 11 11 C 1.36089 * 120.99181 * 0.02562 * 10 9 8 12 12 C 1.40540 * 119.65387 * 0.02562 * 11 10 9 13 13 C 1.36095 * 119.49925 * 90.00192 * 4 3 2 14 14 C 1.34779 * 120.00141 * 180.02562 * 2 1 3 15 15 O 1.21587 * 120.00321 * 180.02562 * 14 2 1 16 16 N 1.34774 * 119.99635 * 359.97438 * 14 2 1 17 17 C 1.46503 * 120.00124 * 179.97438 * 16 14 2 18 18 C 1.52997 * 109.47438 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47174 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47129 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00234 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00166 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99868 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00208 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46945 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47088 * 119.99660 * 24 22 20 27 27 H 1.48501 * 109.46721 * 239.99816 * 24 22 20 28 28 H 1.08997 * 109.47332 * 89.99742 * 1 2 3 29 29 H 1.09001 * 109.47515 * 210.00168 * 1 2 3 30 30 H 1.09009 * 109.47052 * 330.00251 * 1 2 3 31 31 H 1.09006 * 109.46805 * 149.99919 * 3 2 1 32 32 H 1.09000 * 109.47076 * 30.00439 * 3 2 1 33 33 H 1.07998 * 119.50525 * 359.97438 * 5 4 3 34 34 H 1.07997 * 120.17524 * 179.73800 * 6 5 4 35 35 H 1.08002 * 120.17303 * 0.02639 * 8 7 6 36 36 H 1.07998 * 119.50902 * 179.97438 * 9 8 7 37 37 H 1.08007 * 119.50474 * 180.02562 * 10 9 8 38 38 H 1.07997 * 120.17251 * 180.02562 * 11 10 9 39 39 H 1.08002 * 120.17715 * 0.02562 * 13 4 3 40 40 H 0.97002 * 120.00638 * 0.02562 * 16 14 2 41 41 H 1.09005 * 109.47207 * 300.01244 * 17 16 14 42 42 H 1.08999 * 109.46832 * 60.00416 * 17 16 14 43 43 H 1.08997 * 109.47068 * 300.00336 * 18 17 16 44 44 H 1.08999 * 109.47094 * 60.00178 * 18 17 16 45 45 H 1.08996 * 109.47173 * 300.00640 * 19 18 17 46 46 H 1.08999 * 109.46931 * 60.00119 * 19 18 17 47 47 H 0.96998 * 119.99810 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6106 1.2904 -2.0700 6 6 3.8705 1.6700 -3.3509 7 6 2.9527 2.4861 -4.0340 8 6 3.1863 2.8978 -5.3573 9 6 2.2752 3.6886 -5.9872 10 6 1.1104 4.0971 -5.3400 11 6 0.8505 3.7176 -4.0592 12 6 1.7686 2.9020 -3.3757 13 6 1.5346 2.4894 -2.0527 14 6 2.1388 -1.1672 -0.0005 15 8 3.3547 -1.1672 -0.0001 16 7 1.4649 -2.3343 -0.0005 17 6 2.1974 -3.6031 -0.0017 18 6 1.2031 -4.7660 -0.0021 19 6 1.9681 -6.0911 -0.0039 20 6 0.9888 -7.2365 -0.0049 21 1 -0.0730 -7.0392 -0.0039 22 6 1.4484 -8.5364 -0.0061 23 7 2.7414 -8.7768 -0.0068 24 14 0.2345 -9.9563 -0.0081 25 1 -1.1513 -9.4226 -0.0075 26 1 0.4453 -10.7861 -1.2214 27 1 0.4445 -10.7886 1.2037 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 3.1499 1.1384 0.5139 32 1 1.6084 2.0284 0.5139 33 1 4.3178 0.6635 -1.5472 34 1 4.7771 1.3455 -3.8399 35 1 4.0842 2.5884 -5.8716 36 1 2.4574 4.0040 -7.0039 37 1 0.4034 4.7243 -5.8628 38 1 -0.0565 4.0415 -3.5705 39 1 0.6366 2.7986 -1.5385 40 1 0.4949 -2.3344 -0.0005 41 1 2.8235 -3.6604 -0.8921 42 1 2.8246 -3.6613 0.8879 43 1 0.5768 -4.7089 0.8882 44 1 0.5762 -4.7077 -0.8918 45 1 2.5942 -6.1480 -0.8943 46 1 2.5954 -6.1497 0.8856 47 1 3.0647 -9.6913 -0.0080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264112704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:35 Heat of formation + Delta-G solvation = 4.158187 kcal Electronic energy + Delta-G solvation = -26140.344812 eV Core-core repulsion = 22480.409405 eV Total energy + Delta-G solvation = -3659.935407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72115 -39.91728 -37.22669 -35.56798 -35.16192 -33.35068 -32.93998 -31.53775 -30.68063 -29.58928 -27.52457 -26.96080 -25.42614 -23.53426 -23.04702 -22.15475 -22.05623 -20.61781 -19.64281 -17.91490 -17.56525 -17.15385 -16.54634 -16.41400 -16.10281 -15.49201 -14.95436 -14.61422 -14.56708 -14.33923 -14.15049 -13.87975 -13.67523 -13.58372 -13.48808 -13.21874 -12.84731 -12.70364 -12.29901 -12.18801 -11.78424 -11.75964 -11.67514 -11.43656 -11.24770 -11.01017 -10.91537 -10.69966 -10.55935 -10.19741 -10.03508 -9.85228 -9.43944 -9.10441 -8.96210 -8.74402 -8.50818 -8.36796 -8.09562 -6.01250 -4.04180 0.31728 0.78974 1.83838 2.56918 2.99277 3.30178 3.34725 3.37612 3.41134 3.91788 4.10298 4.34394 4.44975 4.54654 4.61723 4.70585 4.80271 4.87048 4.93401 5.00074 5.15366 5.21284 5.27584 5.30225 5.34548 5.45950 5.50010 5.59214 5.71847 5.74152 5.83109 5.87075 6.02451 6.06648 6.20085 6.22021 6.30733 6.41009 6.46416 6.55617 6.62093 6.63833 6.80470 6.82374 7.01893 7.03741 7.64995 7.77757 7.97902 8.07555 8.38873 8.74224 9.02738 9.59915 11.10075 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.002039 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.409555 B =13731.933967 C =14195.711382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.633 5.633 3 C 0.171 3.829 4 C -0.096 4.096 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.049 4.049 8 C -0.106 4.106 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.105 4.105 12 C -0.055 4.055 13 C -0.096 4.096 14 C 0.703 3.297 15 O -0.589 6.589 16 N -0.741 5.741 17 C 0.134 3.866 18 C -0.120 4.120 19 C 0.024 3.976 20 C -0.521 4.521 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 29.518 -6.330 30.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.371 5.371 3 C 0.048 3.952 4 C -0.098 4.098 5 C -0.106 4.106 6 C -0.131 4.131 7 C -0.049 4.049 8 C -0.124 4.124 9 C -0.138 4.138 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.055 4.055 13 C -0.115 4.115 14 C 0.405 3.595 15 O -0.467 6.467 16 N -0.396 5.396 17 C 0.011 3.989 18 C -0.158 4.158 19 C -0.014 4.014 20 C -0.559 4.559 21 H 0.074 0.926 22 C -0.146 4.146 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.344 29.325 -6.299 30.180 hybrid contribution -1.189 -0.908 -0.162 1.505 sum -4.533 28.417 -6.461 29.493 Atomic orbital electron populations 1.21728 0.79971 1.02974 1.01738 1.47037 1.06149 1.04697 1.79199 1.20246 0.98557 0.84053 0.92320 1.20054 0.94827 0.97453 0.97425 1.20992 0.97005 0.97831 0.94771 1.21061 0.99048 0.97940 0.95020 1.18148 0.94522 0.97952 0.94274 1.21064 0.99625 0.97953 0.93748 1.20840 0.94494 0.98425 1.00043 1.20828 0.97517 1.00468 0.95174 1.21009 0.98653 0.97610 0.95012 1.18060 0.94627 0.98476 0.94344 1.20872 0.98781 0.98288 0.93540 1.15936 0.85422 0.80357 0.77832 1.90884 1.11505 1.86188 1.58074 1.45540 1.09852 1.05178 1.79046 1.21510 0.95137 0.80382 1.01847 1.21886 0.97867 0.95306 1.00758 1.19030 0.95482 0.89179 0.97691 1.21240 0.93018 0.90932 1.50740 0.92616 1.25040 0.95139 0.99045 0.95330 1.69980 1.12497 1.20095 1.50678 0.86526 0.81373 0.82433 0.77590 1.19780 1.21002 1.21015 0.92793 0.91207 0.90936 0.88747 0.89795 0.84915 0.85540 0.85643 0.86123 0.86144 0.85740 0.85780 0.77163 0.92003 0.91946 0.92818 0.92832 0.96248 0.96231 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.24 59.84 0.61 1.24 16 2 N -0.63 -7.25 2.86 -188.74 -0.54 -7.79 16 3 C 0.17 1.72 5.54 -5.19 -0.03 1.69 16 4 C -0.10 -1.04 5.43 -104.97 -0.57 -1.61 16 5 C -0.09 -1.06 9.59 -39.93 -0.38 -1.45 16 6 C -0.11 -1.26 9.77 -39.48 -0.39 -1.65 16 7 C -0.05 -0.54 5.74 -106.84 -0.61 -1.15 16 8 C -0.11 -0.98 9.77 -39.49 -0.39 -1.37 16 9 C -0.12 -0.97 9.95 -39.93 -0.40 -1.37 16 10 C -0.12 -0.96 9.95 -39.93 -0.40 -1.36 16 11 C -0.10 -0.89 9.77 -39.49 -0.39 -1.28 16 12 C -0.06 -0.57 5.74 -106.83 -0.61 -1.19 16 13 C -0.10 -0.92 9.37 -39.48 -0.37 -1.29 16 14 C 0.70 10.95 8.28 -86.92 -0.72 10.23 16 15 O -0.59 -11.20 15.35 5.29 0.08 -11.12 16 16 N -0.74 -11.17 5.42 -65.22 -0.35 -11.52 16 17 C 0.13 2.44 5.67 -4.04 -0.02 2.42 16 18 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 23 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 24 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 30 H 0.07 0.39 7.89 -51.92 -0.41 -0.02 16 31 H 0.09 1.07 7.36 -51.93 -0.38 0.69 16 32 H 0.08 0.58 7.82 -51.93 -0.41 0.18 16 33 H 0.13 1.77 7.48 -52.49 -0.39 1.37 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.39 4.88 6.20 -40.82 -0.25 4.62 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -34.11 391.90 -11.75 -45.86 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.21 Total: 1.91 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -5.35 Total: -13.60 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.16 Total: -45.50 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.11 -11.75 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264112704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.020 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds