Wall clock time and date at job start Tue Mar 31 2020 14:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46506 * 120.00086 * 2 1 4 4 C 1.50696 * 109.46958 * 269.99613 * 3 2 1 5 5 C 1.39370 * 119.51084 * 270.28890 * 4 3 2 6 6 C 1.36098 * 120.99091 * 180.28202 * 5 4 3 7 7 C 1.40536 * 119.65063 * 359.71066 * 6 5 4 8 8 C 1.40540 * 121.28217 * 180.02562 * 7 6 5 9 9 C 1.36091 * 119.65665 * 180.02562 * 8 7 6 10 10 C 1.39376 * 120.98533 * 359.95297 * 9 8 7 11 11 C 1.36089 * 120.99181 * 0.02562 * 10 9 8 12 12 C 1.40540 * 119.65387 * 0.02562 * 11 10 9 13 13 C 1.36095 * 119.49925 * 90.00192 * 4 3 2 14 14 C 1.34779 * 120.00141 * 180.02562 * 2 1 3 15 15 O 1.21587 * 120.00321 * 180.02562 * 14 2 1 16 16 N 1.34774 * 119.99635 * 359.97438 * 14 2 1 17 17 C 1.46503 * 120.00124 * 179.97438 * 16 14 2 18 18 C 1.52997 * 109.47438 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47174 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47129 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00234 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00166 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99868 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00208 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46945 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47088 * 119.99660 * 24 22 20 27 27 H 1.48501 * 109.46721 * 239.99816 * 24 22 20 28 28 H 1.08997 * 109.47332 * 89.99742 * 1 2 3 29 29 H 1.09001 * 109.47515 * 210.00168 * 1 2 3 30 30 H 1.09009 * 109.47052 * 330.00251 * 1 2 3 31 31 H 1.09006 * 109.46805 * 149.99919 * 3 2 1 32 32 H 1.09000 * 109.47076 * 30.00439 * 3 2 1 33 33 H 1.07998 * 119.50525 * 359.97438 * 5 4 3 34 34 H 1.07997 * 120.17524 * 179.73800 * 6 5 4 35 35 H 1.08002 * 120.17303 * 0.02639 * 8 7 6 36 36 H 1.07998 * 119.50902 * 179.97438 * 9 8 7 37 37 H 1.08007 * 119.50474 * 180.02562 * 10 9 8 38 38 H 1.07997 * 120.17251 * 180.02562 * 11 10 9 39 39 H 1.08002 * 120.17715 * 0.02562 * 13 4 3 40 40 H 0.97002 * 120.00638 * 0.02562 * 16 14 2 41 41 H 1.09005 * 109.47207 * 300.01244 * 17 16 14 42 42 H 1.08999 * 109.46832 * 60.00416 * 17 16 14 43 43 H 1.08997 * 109.47068 * 300.00336 * 18 17 16 44 44 H 1.08999 * 109.47094 * 60.00178 * 18 17 16 45 45 H 1.08996 * 109.47173 * 300.00640 * 19 18 17 46 46 H 1.08999 * 109.46931 * 60.00119 * 19 18 17 47 47 H 0.96998 * 119.99810 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6106 1.2904 -2.0700 6 6 3.8705 1.6700 -3.3509 7 6 2.9527 2.4861 -4.0340 8 6 3.1863 2.8978 -5.3573 9 6 2.2752 3.6886 -5.9872 10 6 1.1104 4.0971 -5.3400 11 6 0.8505 3.7176 -4.0592 12 6 1.7686 2.9020 -3.3757 13 6 1.5346 2.4894 -2.0527 14 6 2.1388 -1.1672 -0.0005 15 8 3.3547 -1.1672 -0.0001 16 7 1.4649 -2.3343 -0.0005 17 6 2.1974 -3.6031 -0.0017 18 6 1.2031 -4.7660 -0.0021 19 6 1.9681 -6.0911 -0.0039 20 6 0.9888 -7.2365 -0.0049 21 1 -0.0730 -7.0392 -0.0039 22 6 1.4484 -8.5364 -0.0061 23 7 2.7414 -8.7768 -0.0068 24 14 0.2345 -9.9563 -0.0081 25 1 -1.1513 -9.4226 -0.0075 26 1 0.4453 -10.7861 -1.2214 27 1 0.4445 -10.7886 1.2037 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 3.1499 1.1384 0.5139 32 1 1.6084 2.0284 0.5139 33 1 4.3178 0.6635 -1.5472 34 1 4.7771 1.3455 -3.8399 35 1 4.0842 2.5884 -5.8716 36 1 2.4574 4.0040 -7.0039 37 1 0.4034 4.7243 -5.8628 38 1 -0.0565 4.0415 -3.5705 39 1 0.6366 2.7986 -1.5385 40 1 0.4949 -2.3344 -0.0005 41 1 2.8235 -3.6604 -0.8921 42 1 2.8246 -3.6613 0.8879 43 1 0.5768 -4.7089 0.8882 44 1 0.5762 -4.7077 -0.8918 45 1 2.5942 -6.1480 -0.8943 46 1 2.5954 -6.1497 0.8856 47 1 3.0647 -9.6913 -0.0080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264112704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:34 Heat of formation + Delta-G solvation = -14.407677 kcal Electronic energy + Delta-G solvation = -26141.149889 eV Core-core repulsion = 22480.409405 eV Total energy + Delta-G solvation = -3660.740484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55801 -40.93208 -38.07138 -36.93913 -36.26565 -35.18923 -33.73575 -33.03177 -31.73234 -30.32419 -28.69585 -28.17614 -26.57014 -24.75809 -24.22284 -22.96254 -22.83723 -22.30410 -20.86304 -19.03426 -18.48520 -18.27477 -17.85210 -17.40349 -17.25916 -16.61275 -16.48024 -15.86606 -15.61045 -15.44354 -15.22556 -14.95465 -14.43243 -14.41578 -14.30701 -14.26124 -14.08474 -13.74361 -13.51488 -13.45773 -13.30444 -12.94087 -12.77086 -12.55323 -12.43719 -12.33455 -12.16883 -11.94758 -11.71422 -11.68317 -11.58938 -11.26604 -11.11686 -10.88542 -10.56438 -10.20820 -9.59699 -9.44803 -8.80527 -8.19648 -6.31203 -0.38633 0.03937 1.11774 1.41544 1.41918 1.55120 1.63699 2.12871 2.17195 2.41852 3.03332 3.14039 3.23401 3.66086 3.80282 3.96143 4.05527 4.08074 4.15908 4.21956 4.26901 4.32857 4.37373 4.46794 4.53331 4.55006 4.60565 4.65735 4.76444 4.89869 4.91297 4.94942 4.97609 5.02828 5.15572 5.17582 5.31062 5.35588 5.47154 5.49030 5.54856 5.58424 5.66632 5.67709 5.70253 5.83836 5.92022 5.92931 6.11783 6.22207 6.85985 6.97869 7.38309 7.56312 8.92763 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.002039 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.409555 B =13731.933967 C =14195.711382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.624 5.624 3 C 0.172 3.828 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.069 4.069 8 C -0.126 4.126 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.075 4.075 13 C -0.083 4.083 14 C 0.695 3.305 15 O -0.633 6.633 16 N -0.732 5.732 17 C 0.151 3.849 18 C -0.099 4.099 19 C 0.024 3.976 20 C -0.539 4.539 21 H 0.067 0.933 22 C -0.006 4.006 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.257 1.257 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.409 0.591 41 H 0.042 0.958 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.065 0.935 45 H -0.010 1.010 46 H -0.007 1.007 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 31.482 -6.857 33.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.361 5.361 3 C 0.049 3.951 4 C -0.113 4.113 5 C -0.128 4.128 6 C -0.144 4.144 7 C -0.069 4.069 8 C -0.144 4.144 9 C -0.136 4.136 10 C -0.143 4.143 11 C -0.126 4.126 12 C -0.075 4.075 13 C -0.102 4.102 14 C 0.396 3.604 15 O -0.514 6.514 16 N -0.389 5.389 17 C 0.026 3.974 18 C -0.137 4.137 19 C -0.014 4.014 20 C -0.577 4.577 21 H 0.085 0.915 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.181 1.181 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.247 0.753 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.009 0.991 46 H 0.011 0.989 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.351 31.340 -6.826 32.906 hybrid contribution 0.057 -1.398 -0.089 1.402 sum -7.293 29.941 -6.916 31.583 Atomic orbital electron populations 1.22036 0.77225 1.05031 1.02785 1.47102 1.07802 1.03585 1.77570 1.20386 0.98342 0.84158 0.92198 1.20079 0.94821 0.98566 0.97825 1.20947 0.97833 0.98664 0.95378 1.21181 0.99707 0.98541 0.94985 1.18396 0.95017 0.98308 0.95221 1.21275 1.00758 0.98894 0.93463 1.21217 0.94121 0.97191 1.01059 1.21239 0.97697 1.00145 0.95174 1.21344 0.99081 0.96824 0.95326 1.18406 0.94892 0.99145 0.95023 1.21174 0.99107 0.96694 0.93192 1.16181 0.85051 0.81425 0.77723 1.90861 1.13687 1.86966 1.59875 1.45204 1.10448 1.04056 1.79218 1.21048 0.94562 0.81578 1.00239 1.21579 0.97460 0.92663 1.02032 1.18941 0.95183 0.92232 0.95043 1.21700 0.93870 0.91813 1.50296 0.91458 1.26057 0.97075 1.02361 0.94825 1.70128 1.14790 1.20905 1.51765 0.85340 0.79292 0.78433 0.77606 1.18111 1.20613 1.20558 0.92161 0.90692 0.87452 0.91079 0.85672 0.87578 0.85270 0.84756 0.83789 0.83345 0.83012 0.82430 0.75282 0.93980 0.93478 0.91231 0.91584 0.99112 0.98890 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.24 127.77 1.31 2.18 16 2 N -0.62 -13.49 2.86 -869.31 -2.48 -15.97 16 3 C 0.17 3.28 5.54 85.63 0.47 3.76 16 4 C -0.11 -2.38 5.43 -20.09 -0.11 -2.48 16 5 C -0.11 -2.89 9.59 22.04 0.21 -2.68 16 6 C -0.13 -3.06 9.77 22.33 0.22 -2.84 16 7 C -0.07 -1.53 5.74 -21.30 -0.12 -1.65 16 8 C -0.13 -2.27 9.77 22.33 0.22 -2.05 16 9 C -0.12 -1.66 9.95 22.04 0.22 -1.44 16 10 C -0.12 -1.57 9.95 22.04 0.22 -1.35 16 11 C -0.11 -1.50 9.77 22.33 0.22 -1.29 16 12 C -0.07 -1.43 5.74 -21.29 -0.12 -1.55 16 13 C -0.08 -1.41 9.37 22.33 0.21 -1.20 16 14 C 0.69 21.92 8.28 179.05 1.48 23.40 16 15 O -0.63 -25.52 15.35 -3.99 -0.06 -25.58 16 16 N -0.73 -21.87 5.42 -478.53 -2.59 -24.47 16 17 C 0.15 5.63 5.67 86.38 0.49 6.12 16 18 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 19 C 0.02 1.26 4.97 29.85 0.15 1.41 16 20 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 22 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 23 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 24 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.86 6.36 -2.39 -0.02 0.85 16 30 H 0.11 0.62 7.89 -2.38 -0.02 0.61 16 31 H 0.07 1.70 7.36 -2.38 -0.02 1.68 16 32 H 0.13 1.32 7.82 -2.39 -0.02 1.30 16 33 H 0.11 3.26 7.48 -2.91 -0.02 3.24 16 34 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 35 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.41 9.43 6.20 -92.71 -0.58 8.86 16 41 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.72 391.90 3.48 -74.24 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.38 Total: 18.55 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 5.92 Total: -15.42 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -4.79 Total: -97.90 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.72 3.48 -74.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264112704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.831 kcal (2) G-P(sol) polarization free energy of solvation -77.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds