Wall clock time and date at job start Tue Mar 31 2020 14:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47127 * 299.99934 * 3 2 1 6 6 H 1.48497 * 109.47064 * 59.99876 * 3 2 1 7 7 C 1.37874 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46767 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47180 * 180.02562 * 11 10 9 13 13 C 1.38689 * 120.00243 * 180.02562 * 12 11 10 14 14 N 1.31678 * 119.79805 * 354.61969 * 13 12 11 15 15 C 1.34112 * 119.79209 * 179.73387 * 14 13 12 16 16 C 1.40418 * 120.85608 * 180.24851 * 15 14 13 17 17 C 1.36216 * 119.75829 * 180.27543 * 16 15 14 18 18 C 1.39230 * 120.90143 * 0.04115 * 17 16 15 19 19 C 1.36222 * 120.90272 * 359.95655 * 18 17 16 20 20 C 1.40418 * 119.75654 * 0.02562 * 19 18 17 21 21 N 1.34117 * 120.85716 * 179.97438 * 20 19 18 22 22 C 1.31679 * 119.79178 * 180.02562 * 21 20 19 23 23 N 1.38683 * 119.80078 * 180.02562 * 22 21 20 24 24 C 1.48542 * 110.99786 * 279.36904 * 23 22 21 25 25 C 1.54934 * 103.22529 * 159.71648 * 24 23 22 26 26 C 1.54597 * 102.92320 * 322.58871 * 25 24 23 27 27 C 1.47899 * 110.99834 * 36.76135 * 23 22 21 28 28 H 0.97001 * 119.99967 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46613 * 60.00578 * 9 7 2 30 30 H 1.08997 * 109.47207 * 300.00320 * 9 7 2 31 31 H 1.08996 * 109.46844 * 60.00399 * 10 9 7 32 32 H 1.08997 * 109.47192 * 299.99992 * 10 9 7 33 33 H 1.08997 * 109.47150 * 299.99885 * 11 10 9 34 34 H 1.09002 * 109.47569 * 59.99881 * 11 10 9 35 35 H 0.97001 * 119.99702 * 359.97438 * 12 11 10 36 36 H 1.07997 * 120.12221 * 0.27571 * 16 15 14 37 37 H 1.07997 * 119.54859 * 180.02562 * 17 16 15 38 38 H 1.07998 * 119.55390 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.11906 * 180.02562 * 19 18 17 40 40 H 1.08994 * 110.66788 * 278.15566 * 24 23 22 41 41 H 1.08999 * 110.66576 * 41.28581 * 24 23 22 42 42 H 1.08999 * 110.72731 * 204.23001 * 25 24 23 43 43 H 1.08999 * 110.72122 * 80.94467 * 25 24 23 44 44 H 1.09000 * 110.30714 * 263.04236 * 26 25 24 45 45 H 1.09004 * 110.31059 * 140.87289 * 26 25 24 46 46 H 1.08994 * 109.92056 * 333.51483 * 27 23 22 47 47 H 1.09006 * 109.91634 * 94.80812 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9700 -7.4082 -0.0015 14 7 0.6792 -7.6460 0.1042 15 6 0.2318 -8.9103 0.0978 16 6 -1.1402 -9.1892 0.2040 17 6 -1.5696 -10.4820 0.2008 18 6 -0.6654 -11.5354 0.0945 19 6 0.6724 -11.3013 -0.0102 20 6 1.1509 -9.9811 -0.0107 21 7 2.4636 -9.7253 -0.1121 22 6 2.8894 -8.4792 -0.1099 23 7 4.2466 -8.2145 -0.2152 24 6 4.9238 -8.3756 1.0970 25 6 6.4107 -8.5694 0.7071 26 6 6.3223 -9.4196 -0.5811 27 6 4.9043 -9.1737 -1.1289 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.8534 -5.0451 0.8886 34 1 0.8539 -5.0446 -0.8914 35 1 3.3860 -5.9233 -0.0002 36 1 -1.8526 -8.3818 0.2878 37 1 -2.6256 -10.6926 0.2822 38 1 -1.0297 -12.5521 0.0946 39 1 1.3625 -12.1279 -0.0925 40 1 4.7994 -7.4807 1.7066 41 1 4.5455 -9.2541 1.6197 42 1 6.9474 -9.1076 1.4883 43 1 6.8844 -7.6091 0.5036 44 1 6.4598 -10.4754 -0.3477 45 1 7.0694 -9.0906 -1.3036 46 1 4.3464 -10.1098 -1.1489 47 1 4.9619 -8.7512 -2.1321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270752464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:44 Heat of formation + Delta-G solvation = 72.191785 kcal Electronic energy + Delta-G solvation = -26908.382987 eV Core-core repulsion = 23283.690489 eV Total energy + Delta-G solvation = -3624.692498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53773 -39.32007 -37.66733 -36.05647 -34.46280 -33.48102 -32.30616 -31.30964 -29.83251 -29.18558 -28.84075 -26.72529 -24.68464 -23.58482 -22.57209 -22.19961 -21.51913 -21.09576 -20.45275 -18.66061 -18.36393 -17.39220 -16.33575 -16.10002 -15.85292 -15.50505 -15.47939 -14.66254 -14.53103 -14.44783 -14.19652 -14.10395 -13.99426 -13.39131 -12.96847 -12.59964 -12.57893 -12.29508 -12.10145 -11.83773 -11.74894 -11.70052 -11.59031 -11.49675 -11.41918 -11.29950 -10.91311 -10.78807 -10.69394 -10.54482 -9.96293 -9.62850 -9.52677 -9.36738 -9.11534 -8.90789 -8.50754 -8.36823 -7.52864 -6.01401 -4.04093 0.23331 0.76420 1.96452 2.79868 3.17876 3.30392 3.37888 3.40503 3.42594 4.03113 4.06705 4.27048 4.37633 4.45046 4.51529 4.54309 4.70798 4.81731 4.97173 5.06617 5.16896 5.21364 5.29706 5.34628 5.36688 5.49577 5.54928 5.59690 5.72222 5.75246 5.76546 5.81040 5.85705 5.91895 6.04780 6.14018 6.20119 6.30963 6.35736 6.56451 6.59685 6.62881 6.84639 6.98414 7.20750 7.27982 7.60902 7.64737 7.77271 7.97780 8.15218 8.39220 9.02789 9.60113 11.09943 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.002921 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.406426 B = 9583.233864 C =11886.821066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.124 3.876 12 N -0.685 5.685 13 C 0.408 3.592 14 N -0.508 5.508 15 C 0.140 3.860 16 C -0.103 4.103 17 C -0.090 4.090 18 C -0.133 4.133 19 C -0.065 4.065 20 C 0.027 3.973 21 N -0.436 5.436 22 C 0.238 3.762 23 N -0.463 5.463 24 C 0.040 3.960 25 C -0.121 4.121 26 C -0.128 4.128 27 C 0.035 3.965 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.417 0.583 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -25.408 0.626 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.159 4.159 11 C 0.001 3.999 12 N -0.316 5.316 13 C 0.151 3.849 14 N -0.235 5.235 15 C 0.015 3.985 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.154 4.154 19 C -0.085 4.085 20 C -0.098 4.098 21 N -0.152 5.152 22 C -0.018 4.018 23 N -0.187 5.187 24 C -0.086 4.086 25 C -0.159 4.159 26 C -0.166 4.166 27 C -0.092 4.092 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.255 0.745 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.045 -24.723 0.444 25.456 hybrid contribution 0.625 0.286 0.200 0.716 sum 6.671 -24.437 0.644 25.340 Atomic orbital electron populations 1.69976 1.06046 1.26540 1.50754 1.25026 0.94852 0.99289 0.95312 0.86536 0.80089 0.83791 0.77588 1.19743 1.21010 1.21010 1.21248 0.93049 0.90930 1.50671 0.92590 1.19017 0.93803 0.90801 0.97610 1.21895 0.99809 0.93291 1.00945 1.21694 0.91641 0.84603 1.01951 1.44963 1.10394 1.01129 1.75151 1.19224 0.88650 0.86728 0.90248 1.68422 1.12271 1.20474 1.22318 1.19266 0.95022 0.87978 0.96266 1.20733 0.93070 0.97401 1.01137 1.20911 1.00096 0.92181 0.97856 1.20784 0.92825 0.99454 1.02331 1.20641 0.95684 0.94185 0.97945 1.19127 0.88524 0.95016 1.07087 1.68426 1.15887 1.20734 1.10142 1.20637 0.92023 0.88181 1.00968 1.62610 0.98009 1.48536 1.09534 1.23360 0.93779 1.01707 0.89752 1.22495 0.95210 1.00945 0.97288 1.22386 0.96490 1.00206 0.97568 1.22947 0.94136 0.95628 0.96503 0.93012 0.96289 0.96293 0.92754 0.92679 0.91650 0.91850 0.74477 0.84547 0.85243 0.85448 0.85282 0.89352 0.92701 0.90633 0.90161 0.91306 0.90722 0.90790 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.12 2.19 5.69 -4.05 -0.02 2.17 16 12 N -0.69 -10.53 5.67 -59.99 -0.34 -10.87 16 13 C 0.41 6.46 7.51 -155.00 -1.16 5.30 16 14 N -0.51 -8.53 9.66 -9.86 -0.10 -8.63 16 15 C 0.14 2.11 6.58 -84.79 -0.56 1.55 16 16 C -0.10 -1.28 9.98 -39.49 -0.39 -1.67 16 17 C -0.09 -0.87 9.95 -39.94 -0.40 -1.27 16 18 C -0.13 -1.22 9.95 -39.94 -0.40 -1.62 16 19 C -0.07 -0.72 9.98 -39.49 -0.39 -1.11 16 20 C 0.03 0.38 6.58 -84.79 -0.56 -0.18 16 21 N -0.44 -6.16 8.75 -9.86 -0.09 -6.24 16 22 C 0.24 3.36 5.58 -155.01 -0.87 2.50 16 23 N -0.46 -5.43 4.41 -168.74 -0.74 -6.18 16 24 C 0.04 0.40 6.50 -1.89 -0.01 0.39 16 25 C -0.12 -0.93 7.06 -24.87 -0.18 -1.10 16 26 C -0.13 -0.99 6.93 -25.38 -0.18 -1.16 16 27 C 0.03 0.36 6.59 -2.76 -0.02 0.34 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.42 5.79 7.74 -40.82 -0.32 5.47 16 36 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.59 7.99 -51.93 -0.42 0.17 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.83 6.56 -51.93 -0.34 0.49 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -31.60 384.61 -12.96 -44.56 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.38 Total: 2.39 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -5.82 Total: -11.27 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.53 Total: -57.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.60 -12.96 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270752464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.751 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds