Wall clock time and date at job start Tue Mar 31 2020 14:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47127 * 299.99934 * 3 2 1 6 6 H 1.48497 * 109.47064 * 59.99876 * 3 2 1 7 7 C 1.37874 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46767 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47180 * 180.02562 * 11 10 9 13 13 C 1.38689 * 120.00243 * 180.02562 * 12 11 10 14 14 N 1.31678 * 119.79805 * 354.61969 * 13 12 11 15 15 C 1.34112 * 119.79209 * 179.73387 * 14 13 12 16 16 C 1.40418 * 120.85608 * 180.24851 * 15 14 13 17 17 C 1.36216 * 119.75829 * 180.27543 * 16 15 14 18 18 C 1.39230 * 120.90143 * 0.04115 * 17 16 15 19 19 C 1.36222 * 120.90272 * 359.95655 * 18 17 16 20 20 C 1.40418 * 119.75654 * 0.02562 * 19 18 17 21 21 N 1.34117 * 120.85716 * 179.97438 * 20 19 18 22 22 C 1.31679 * 119.79178 * 180.02562 * 21 20 19 23 23 N 1.38683 * 119.80078 * 180.02562 * 22 21 20 24 24 C 1.48542 * 110.99786 * 279.36904 * 23 22 21 25 25 C 1.54934 * 103.22529 * 159.71648 * 24 23 22 26 26 C 1.54597 * 102.92320 * 322.58871 * 25 24 23 27 27 C 1.47899 * 110.99834 * 36.76135 * 23 22 21 28 28 H 0.97001 * 119.99967 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46613 * 60.00578 * 9 7 2 30 30 H 1.08997 * 109.47207 * 300.00320 * 9 7 2 31 31 H 1.08996 * 109.46844 * 60.00399 * 10 9 7 32 32 H 1.08997 * 109.47192 * 299.99992 * 10 9 7 33 33 H 1.08997 * 109.47150 * 299.99885 * 11 10 9 34 34 H 1.09002 * 109.47569 * 59.99881 * 11 10 9 35 35 H 0.97001 * 119.99702 * 359.97438 * 12 11 10 36 36 H 1.07997 * 120.12221 * 0.27571 * 16 15 14 37 37 H 1.07997 * 119.54859 * 180.02562 * 17 16 15 38 38 H 1.07998 * 119.55390 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.11906 * 180.02562 * 19 18 17 40 40 H 1.08994 * 110.66788 * 278.15566 * 24 23 22 41 41 H 1.08999 * 110.66576 * 41.28581 * 24 23 22 42 42 H 1.08999 * 110.72731 * 204.23001 * 25 24 23 43 43 H 1.08999 * 110.72122 * 80.94467 * 25 24 23 44 44 H 1.09000 * 110.30714 * 263.04236 * 26 25 24 45 45 H 1.09004 * 110.31059 * 140.87289 * 26 25 24 46 46 H 1.08994 * 109.92056 * 333.51483 * 27 23 22 47 47 H 1.09006 * 109.91634 * 94.80812 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9700 -7.4082 -0.0015 14 7 0.6792 -7.6460 0.1042 15 6 0.2318 -8.9103 0.0978 16 6 -1.1402 -9.1892 0.2040 17 6 -1.5696 -10.4820 0.2008 18 6 -0.6654 -11.5354 0.0945 19 6 0.6724 -11.3013 -0.0102 20 6 1.1509 -9.9811 -0.0107 21 7 2.4636 -9.7253 -0.1121 22 6 2.8894 -8.4792 -0.1099 23 7 4.2466 -8.2145 -0.2152 24 6 4.9238 -8.3756 1.0970 25 6 6.4107 -8.5694 0.7071 26 6 6.3223 -9.4196 -0.5811 27 6 4.9043 -9.1737 -1.1289 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.8534 -5.0451 0.8886 34 1 0.8539 -5.0446 -0.8914 35 1 3.3860 -5.9233 -0.0002 36 1 -1.8526 -8.3818 0.2878 37 1 -2.6256 -10.6926 0.2822 38 1 -1.0297 -12.5521 0.0946 39 1 1.3625 -12.1279 -0.0925 40 1 4.7994 -7.4807 1.7066 41 1 4.5455 -9.2541 1.6197 42 1 6.9474 -9.1076 1.4883 43 1 6.8844 -7.6091 0.5036 44 1 6.4598 -10.4754 -0.3477 45 1 7.0694 -9.0906 -1.3036 46 1 4.3464 -10.1098 -1.1489 47 1 4.9619 -8.7512 -2.1321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270752464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:43 Heat of formation + Delta-G solvation = 54.339891 kcal Electronic energy + Delta-G solvation = -26909.157103 eV Core-core repulsion = 23283.690489 eV Total energy + Delta-G solvation = -3625.466614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55543 -40.16749 -38.73682 -37.25413 -35.82375 -35.05599 -33.56944 -32.67992 -30.89288 -29.95962 -29.86151 -28.38507 -25.99857 -24.80774 -23.91191 -23.22089 -22.42883 -22.12435 -21.81217 -19.66598 -19.43120 -18.46353 -18.39175 -16.96971 -16.78175 -16.66665 -16.47553 -16.40755 -15.95743 -15.62601 -15.33818 -15.03483 -14.90368 -14.29623 -14.16012 -14.05728 -13.74352 -13.70824 -13.36158 -13.01493 -12.88579 -12.67978 -12.66594 -12.59838 -12.55405 -12.45298 -12.31192 -12.23118 -12.06208 -11.68969 -11.50657 -11.42658 -11.18662 -10.78816 -10.55992 -10.42464 -9.92438 -9.42373 -8.66376 -8.19673 -6.30844 -0.74002 -0.25354 0.96470 1.41340 1.41482 1.54884 1.85715 2.01695 2.41527 2.44657 3.03739 3.13086 3.14061 3.24894 3.47841 3.68210 3.83514 3.92686 4.07208 4.15263 4.18229 4.22154 4.29391 4.30913 4.42750 4.51495 4.55551 4.57836 4.73543 4.87689 4.91932 4.95057 4.98085 5.00983 5.03681 5.14443 5.15694 5.22495 5.23248 5.27244 5.45742 5.50327 5.59994 5.70639 5.71627 5.75596 5.83966 6.06344 6.15795 6.23955 6.51690 6.86103 7.01901 7.38557 8.92644 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.002921 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.406426 B = 9583.233864 C =11886.821066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.102 4.102 11 C 0.146 3.854 12 N -0.683 5.683 13 C 0.390 3.610 14 N -0.536 5.536 15 C 0.107 3.893 16 C -0.127 4.127 17 C -0.073 4.073 18 C -0.115 4.115 19 C -0.075 4.075 20 C 0.011 3.989 21 N -0.438 5.438 22 C 0.235 3.765 23 N -0.468 5.468 24 C 0.038 3.962 25 C -0.113 4.113 26 C -0.121 4.121 27 C 0.033 3.967 28 H 0.263 0.737 29 H -0.008 1.008 30 H -0.007 1.007 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.424 0.576 36 H 0.133 0.867 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 -27.331 0.733 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.010 4.010 10 C -0.140 4.140 11 C 0.022 3.978 12 N -0.317 5.317 13 C 0.134 3.866 14 N -0.264 5.264 15 C -0.017 4.017 16 C -0.148 4.148 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.095 4.095 20 C -0.114 4.114 21 N -0.154 5.154 22 C -0.021 4.021 23 N -0.192 5.192 24 C -0.088 4.088 25 C -0.151 4.151 26 C -0.159 4.159 27 C -0.094 4.094 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.151 0.849 37 H 0.184 0.816 38 H 0.187 0.813 39 H 0.165 0.835 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.357 -26.692 0.552 27.693 hybrid contribution 0.060 0.697 0.168 0.719 sum 7.417 -25.995 0.720 27.042 Atomic orbital electron populations 1.70116 1.07875 1.27714 1.51740 1.26005 0.95761 1.03473 0.94774 0.85377 0.79177 0.78678 0.77680 1.18321 1.20518 1.20467 1.21698 0.93684 0.92054 1.50377 0.91748 1.18902 0.94280 0.92718 0.95088 1.21593 0.98522 0.92102 1.01782 1.21196 0.91417 0.84656 1.00571 1.44607 1.10087 1.00539 1.76492 1.19397 0.89025 0.86996 0.91203 1.68343 1.13139 1.22108 1.22772 1.19678 0.96452 0.87720 0.97823 1.20920 0.92060 0.98986 1.02801 1.21375 1.02143 0.90881 0.94813 1.21294 0.91790 1.01280 0.99152 1.20960 0.97130 0.93235 0.98159 1.19580 0.88460 0.96188 1.07131 1.68510 1.16080 1.20502 1.10323 1.20681 0.92846 0.87712 1.00821 1.62628 0.96985 1.48991 1.10604 1.23422 0.95236 1.01176 0.88950 1.22500 0.93459 1.01470 0.97712 1.22374 0.94926 1.00889 0.97720 1.23000 0.95460 0.94630 0.96333 0.92798 0.98914 0.98829 0.91695 0.91830 0.93060 0.93399 0.73669 0.84874 0.81585 0.81258 0.83470 0.89540 0.93705 0.88837 0.89710 0.90334 0.89359 0.92030 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.10 -4.14 5.27 30.60 0.16 -3.97 16 11 C 0.15 5.43 5.69 86.38 0.49 5.92 16 12 N -0.68 -21.92 5.67 -343.72 -1.95 -23.87 16 13 C 0.39 12.95 7.51 133.99 1.01 13.96 16 14 N -0.54 -19.08 9.66 -185.10 -1.79 -20.86 16 15 C 0.11 3.33 6.58 40.14 0.26 3.59 16 16 C -0.13 -3.15 9.98 22.33 0.22 -2.93 16 17 C -0.07 -1.20 9.95 22.04 0.22 -0.98 16 18 C -0.12 -1.70 9.95 22.04 0.22 -1.48 16 19 C -0.08 -1.52 9.98 22.33 0.22 -1.30 16 20 C 0.01 0.31 6.58 40.14 0.26 0.58 16 21 N -0.44 -12.53 8.75 -185.10 -1.62 -14.15 16 22 C 0.23 6.84 5.58 133.99 0.75 7.58 16 23 N -0.47 -11.03 4.41 -687.78 -3.03 -14.06 16 24 C 0.04 0.75 6.50 86.65 0.56 1.31 16 25 C -0.11 -1.53 7.06 31.80 0.22 -1.31 16 26 C -0.12 -1.65 6.93 31.47 0.22 -1.43 16 27 C 0.03 0.65 6.59 86.45 0.57 1.22 16 28 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.42 12.04 7.74 -92.71 -0.72 11.32 16 36 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 0.96 7.99 -2.39 -0.02 0.94 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.06 1.38 6.56 -2.39 -0.02 1.36 16 47 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -71.27 384.61 0.41 -70.86 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.25 Total: 20.58 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 6.24 Total: -7.70 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -8.11 Total: -130.06 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.27 0.41 -70.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270752464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.204 kcal (2) G-P(sol) polarization free energy of solvation -71.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds