Wall clock time and date at job start Tue Mar 31 2020 14:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48496 * 109.46861 * 270.00223 * 3 2 1 5 5 H 1.48495 * 109.47183 * 30.00124 * 3 2 1 6 6 H 1.48496 * 109.46757 * 150.00229 * 3 2 1 7 7 C 1.37873 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99750 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99661 * 179.97438 * 7 2 1 10 10 N 1.46509 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.35053 * 125.92745 * 124.70987 * 10 9 7 12 12 C 1.35070 * 107.98399 * 179.87352 * 11 10 9 13 13 C 1.50694 * 126.07593 * 180.15007 * 12 11 10 14 14 N 1.46900 * 109.47300 * 105.37628 * 13 12 11 15 15 C 1.46900 * 111.00316 * 184.74920 * 14 13 12 16 16 C 1.53001 * 109.46827 * 180.02562 * 15 14 13 17 17 C 1.53778 * 113.61221 * 274.12866 * 16 15 14 18 18 C 1.53953 * 87.02172 * 220.05167 * 17 16 15 19 19 C 1.53780 * 87.11127 * 25.36730 * 18 17 16 20 20 C 1.40871 * 107.85081 * 0.39322 * 12 11 10 21 21 C 1.48370 * 126.04376 * 179.75332 * 20 12 11 22 22 C 1.39768 * 120.90293 * 317.14637 * 21 20 12 23 23 C 1.37958 * 119.01986 * 179.72594 * 22 21 20 24 24 N 1.31941 * 120.87738 * 0.55412 * 23 22 21 25 25 C 1.31928 * 122.00843 * 359.71621 * 24 23 22 26 26 C 1.37964 * 120.87533 * 0.02562 * 25 24 23 27 27 N 1.31650 * 107.91868 * 359.75959 * 20 12 11 28 28 H 0.97001 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47207 * 60.00217 * 9 7 2 30 30 H 1.09001 * 109.47428 * 299.99689 * 9 7 2 31 31 H 1.08000 * 126.00698 * 0.02822 * 11 10 9 32 32 H 1.08998 * 109.47515 * 225.37894 * 13 12 11 33 33 H 1.08995 * 109.47008 * 345.37790 * 13 12 11 34 34 H 1.00903 * 111.00056 * 308.70431 * 14 13 12 35 35 H 1.08995 * 109.46686 * 299.99927 * 15 14 13 36 36 H 1.09002 * 109.47013 * 59.99828 * 15 14 13 37 37 H 1.08992 * 112.85369 * 45.33016 * 16 15 14 38 38 H 1.09002 * 113.61911 * 334.57615 * 17 16 15 39 39 H 1.09000 * 113.61450 * 105.47710 * 17 16 15 40 40 H 1.08996 * 113.53888 * 270.81334 * 18 17 16 41 41 H 1.09001 * 113.66679 * 139.93242 * 18 17 16 42 42 H 1.08998 * 113.61829 * 220.09074 * 19 18 17 43 43 H 1.08999 * 113.69523 * 89.19488 * 19 18 17 44 44 H 1.07997 * 120.48943 * 359.97438 * 22 21 20 45 45 H 1.08003 * 119.56116 * 180.24792 * 23 22 21 46 46 H 1.07994 * 119.56271 * 180.02562 * 25 24 23 47 47 H 1.08004 * 120.48381 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 4.8508 -3.1143 -0.9019 12 6 5.0580 -4.4042 -0.5592 13 6 5.9428 -5.3842 -1.2856 14 7 7.1762 -5.5942 -0.5158 15 6 8.1130 -6.4574 -1.2475 16 6 9.3821 -6.6530 -0.4157 17 6 10.4253 -5.5404 -0.6126 18 6 11.4945 -6.6477 -0.5798 19 6 10.3973 -7.6135 -1.0575 20 6 4.2958 -4.6723 0.5947 21 6 4.2218 -5.9699 1.3102 22 6 4.1124 -7.1725 0.6064 23 6 4.0523 -8.3572 1.3108 24 7 4.0858 -8.3631 2.6298 25 6 4.1829 -7.2504 3.3319 26 6 4.2535 -6.0226 2.7065 27 7 3.6604 -3.5679 0.9260 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 5.2904 -2.6029 -1.7455 32 1 5.4185 -6.3332 -1.3978 33 1 6.1920 -4.9882 -2.2700 34 1 7.6073 -4.7139 -0.2763 35 1 7.6469 -7.4253 -1.4318 36 1 8.3698 -5.9908 -2.1986 37 1 9.1725 -6.8747 0.6306 38 1 10.3489 -5.0356 -1.5757 39 1 10.4877 -4.8470 0.2260 40 1 11.8634 -6.8670 0.4221 41 1 12.2956 -6.5040 -1.3049 42 1 10.4370 -8.5913 -0.5775 43 1 10.3122 -7.6777 -2.1423 44 1 4.0795 -7.1746 -0.4731 45 1 3.9717 -9.2918 0.7757 46 1 4.2075 -7.3012 4.4103 47 1 4.3333 -5.1156 3.2875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278560930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:51 Heat of formation + Delta-G solvation = 128.271093 kcal Electronic energy + Delta-G solvation = -26773.317420 eV Core-core repulsion = 23151.056703 eV Total energy + Delta-G solvation = -3622.260717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84345 -39.52818 -39.17254 -35.76599 -34.03782 -32.83798 -31.30604 -31.08175 -30.38752 -28.35481 -27.07068 -25.85036 -24.30195 -24.08228 -23.13426 -22.23207 -21.81744 -20.14431 -19.66305 -19.39210 -17.16993 -16.84862 -16.20475 -15.87288 -15.71563 -15.47396 -15.17642 -14.89548 -14.72584 -14.42322 -13.99825 -13.70881 -13.53860 -13.24160 -13.21420 -13.01666 -12.69689 -12.65814 -12.42290 -12.34176 -12.10059 -11.77534 -11.61519 -11.29119 -11.15147 -10.83699 -10.76313 -10.48239 -10.39439 -10.30885 -10.12948 -9.82988 -9.47990 -9.32018 -8.94121 -8.84370 -8.54481 -8.35284 -7.81619 -6.30695 -4.34273 1.29632 1.38005 2.50164 3.06527 3.10504 3.15408 3.15463 3.28704 4.10269 4.15571 4.19475 4.39957 4.50217 4.60873 4.62281 4.69992 4.74066 4.96067 5.02335 5.14696 5.20119 5.28446 5.32161 5.37879 5.41629 5.46991 5.48194 5.49484 5.60456 5.65610 5.67295 5.74008 5.81850 5.87004 5.92144 6.04451 6.04793 6.12687 6.29862 6.31582 6.37960 6.48361 6.67983 6.88372 6.99837 7.09904 7.23377 7.43691 7.60848 8.15248 8.21643 8.32948 8.78144 9.23198 10.81852 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003293 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.998458 B = 8500.291027 C =10560.361048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.230 3.770 10 N -0.318 5.318 11 C 0.055 3.945 12 C -0.242 4.242 13 C 0.143 3.857 14 N -0.681 5.681 15 C 0.069 3.931 16 C -0.106 4.106 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.136 4.136 20 C 0.087 3.913 21 C 0.068 3.932 22 C -0.148 4.148 23 C 0.094 3.906 24 N -0.493 5.493 25 C 0.095 3.905 26 C -0.150 4.150 27 N -0.251 5.251 28 H 0.269 0.731 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.166 0.834 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.340 0.660 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.133 0.867 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.162 -13.055 -2.567 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.104 0.896 9 C 0.111 3.889 10 N -0.097 5.097 11 C -0.095 4.095 12 C -0.254 4.254 13 C 0.014 3.986 14 N -0.312 5.312 15 C -0.060 4.060 16 C -0.125 4.125 17 C -0.179 4.179 18 C -0.180 4.180 19 C -0.174 4.174 20 C -0.076 4.076 21 C 0.058 3.942 22 C -0.169 4.169 23 C -0.062 4.062 24 N -0.203 5.203 25 C -0.061 4.061 26 C -0.171 4.171 27 N -0.074 5.074 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.183 0.817 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.151 0.849 45 H 0.169 0.831 46 H 0.170 0.830 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.793 -13.472 -0.942 22.338 hybrid contribution 1.154 2.279 -1.855 3.157 sum 18.947 -11.193 -2.798 22.183 Atomic orbital electron populations 1.69870 1.06159 1.27412 1.48682 1.24827 0.94869 0.98787 0.94149 0.86912 0.80433 0.83876 0.78917 1.19698 1.20404 1.18898 1.21068 0.87571 0.95803 1.53174 0.89598 1.20100 0.97656 0.72851 0.98306 1.48972 1.31563 1.10826 1.18377 1.22251 0.96290 0.94267 0.96680 1.19618 1.09331 0.95002 1.01495 1.20098 0.88975 0.96924 0.92625 1.60528 1.05708 1.20069 1.44908 1.21938 0.92143 0.97751 0.94206 1.22565 0.92681 0.96498 1.00713 1.23027 0.96387 0.96572 1.01892 1.22817 0.96631 0.97103 1.01433 1.22907 0.96092 0.97808 1.00614 1.20291 0.98695 0.92652 0.96000 1.18030 0.93918 0.89987 0.92231 1.22059 1.01266 0.92314 1.01232 1.22522 0.96275 0.97436 0.89979 1.67575 1.12654 1.31522 1.08537 1.22564 0.95985 0.87516 1.00068 1.22209 1.00823 0.99722 0.94317 1.77754 1.20495 0.95489 1.13711 0.92060 0.93794 0.93438 0.81661 0.90684 0.95138 0.84211 0.91171 0.95575 0.88474 0.90460 0.91523 0.90308 0.91745 0.91537 0.90299 0.84947 0.83079 0.82996 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 13.96 55.43 0.77 -25.39 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 7 C -0.54 -14.83 9.79 -34.44 -0.34 -15.16 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.23 5.21 5.33 -5.19 -0.03 5.18 16 10 N -0.32 -6.72 3.67 -62.58 -0.23 -6.95 16 11 C 0.05 0.93 11.32 -17.26 -0.20 0.73 16 12 C -0.24 -3.85 5.56 -104.76 -0.58 -4.43 16 13 C 0.14 1.76 5.71 -4.98 -0.03 1.73 16 14 N -0.68 -7.71 6.52 -115.06 -0.75 -8.46 16 15 C 0.07 0.64 5.50 -3.82 -0.02 0.62 16 16 C -0.11 -0.90 3.89 -89.80 -0.35 -1.25 16 17 C -0.14 -1.12 7.65 -25.83 -0.20 -1.32 16 18 C -0.14 -1.02 8.09 -25.83 -0.21 -1.23 16 19 C -0.14 -1.00 7.65 -25.91 -0.20 -1.20 16 20 C 0.09 1.60 6.72 -82.78 -0.56 1.05 16 21 C 0.07 1.11 5.77 -104.58 -0.60 0.50 16 22 C -0.15 -2.04 9.01 -39.11 -0.35 -2.39 16 23 C 0.09 1.22 11.17 -17.61 -0.20 1.02 16 24 N -0.49 -7.05 10.35 -13.35 -0.14 -7.19 16 25 C 0.10 1.30 11.17 -17.61 -0.20 1.10 16 26 C -0.15 -2.27 9.89 -39.11 -0.39 -2.66 16 27 N -0.25 -5.51 12.44 33.42 0.42 -5.09 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 30 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 31 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.07 0.90 5.81 -51.93 -0.30 0.59 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.34 3.93 8.66 -39.29 -0.34 3.59 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.23 7.88 -51.93 -0.41 -0.18 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.13 1.63 6.30 -52.49 -0.33 1.30 16 45 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 46 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -31.31 389.75 -10.48 -41.78 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.22 Total: 6.10 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -4.54 Total: -15.66 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.07 Total: -53.08 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.31 -10.48 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278560930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.052 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds